data_5Y5C
#
_model_server_result.job_id            KTnqJXKbmiMYC74X549_sw 
_model_server_result.datetime_utc      '2024-10-11 01:22:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y5c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5Y5C 
#
_exptl.entry_id    5Y5C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.488 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5Y5C 
_cell.length_a            52.49 
_cell.length_b            52.49 
_cell.length_c            108.39 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y5C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,C,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 160 B CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 106 B CYS 106 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
#
_chem_comp.formula           'C22 H32 O2' 
_chem_comp.formula_weight    328.488 
_chem_comp.id                HXA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 HXA doub 152 n n 
C1 O2 HXA sing 153 n n 
C1 C2 HXA sing 154 n n 
O2 HO2 HXA sing 155 n n 
C2 C3 HXA sing 156 n n 
C2 H21 HXA sing 157 n n 
C2 H22 HXA sing 158 n n 
C3 C4 HXA sing 159 n n 
C3 H31 HXA sing 160 n n 
C3 H32 HXA sing 161 n n 
C4 C5 HXA doub 162 z n 
C4 H4 HXA sing 163 n n 
C5 C6 HXA sing 164 n n 
C5 H5 HXA sing 165 n n 
C6 C7 HXA sing 166 n n 
C6 H61 HXA sing 167 n n 
C6 H62 HXA sing 168 n n 
C7 C8 HXA doub 169 z n 
C7 H7 HXA sing 170 n n 
C8 C9 HXA sing 171 n n 
C8 H8 HXA sing 172 n n 
C9 C10 HXA sing 173 n n 
C9 H91 HXA sing 174 n n 
C9 H92 HXA sing 175 n n 
C10 C11 HXA doub 176 z n 
C10 H10 HXA sing 177 n n 
C11 C12 HXA sing 178 n n 
C11 H11 HXA sing 179 n n 
C12 C13 HXA sing 180 n n 
C12 H121 HXA sing 181 n n 
C12 H122 HXA sing 182 n n 
C13 C14 HXA doub 183 z n 
C13 H13 HXA sing 184 n n 
C14 C15 HXA sing 185 n n 
C14 H14 HXA sing 186 n n 
C15 C16 HXA sing 187 n n 
C15 H151 HXA sing 188 n n 
C15 H152 HXA sing 189 n n 
C16 C17 HXA doub 190 z n 
C16 H16 HXA sing 191 n n 
C17 C18 HXA sing 192 n n 
C17 H17 HXA sing 193 n n 
C18 C19 HXA sing 194 n n 
C18 H181 HXA sing 195 n n 
C18 H182 HXA sing 196 n n 
C19 C20 HXA doub 197 z n 
C19 H19 HXA sing 198 n n 
C20 C21 HXA sing 199 n n 
C20 H20 HXA sing 200 n n 
C21 C22 HXA sing 201 n n 
C21 H211 HXA sing 202 n n 
C21 H212 HXA sing 203 n n 
C22 H221 HXA sing 204 n n 
C22 H222 HXA sing 205 n n 
C22 H223 HXA sing 206 n n 
#
_atom_sites.entry_id                     5Y5C 
_atom_sites.fract_transf_matrix[1][1]    0.019051 
_atom_sites.fract_transf_matrix[1][2]    0.010999 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HXA B 1 201 200 HXA HXA . 
D 2 HXA B 1 202 200 HXA HXA . 
E 3 HOH A 1 201 11 HOH HOH . 
E 3 HOH A 2 202 15 HOH HOH . 
E 3 HOH A 3 203 6 HOH HOH . 
E 3 HOH A 4 204 8 HOH HOH . 
E 3 HOH A 5 205 16 HOH HOH . 
E 3 HOH A 6 206 5 HOH HOH . 
E 3 HOH A 7 207 14 HOH HOH . 
E 3 HOH A 8 208 20 HOH HOH . 
E 3 HOH A 9 209 24 HOH HOH . 
E 3 HOH A 10 210 3 HOH HOH . 
F 3 HOH B 1 301 4 HOH HOH . 
F 3 HOH B 2 302 12 HOH HOH . 
F 3 HOH B 3 303 2 HOH HOH . 
F 3 HOH B 4 304 7 HOH HOH . 
F 3 HOH B 5 305 9 HOH HOH . 
F 3 HOH B 6 306 21 HOH HOH . 
F 3 HOH B 7 307 10 HOH HOH . 
F 3 HOH B 8 308 1 HOH HOH . 
F 3 HOH B 9 309 22 HOH HOH . 
F 3 HOH B 10 310 19 HOH HOH . 
F 3 HOH B 11 311 18 HOH HOH . 
F 3 HOH B 12 312 13 HOH HOH . 
F 3 HOH B 13 313 23 HOH HOH . 
F 3 HOH B 14 314 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HXA . . . D 2 31.596 -6.409 6.088 1 99.4 ? C1 HXA 202 B 1 
HETATM 2 O O1 HXA . . . D 2 30.643 -6.327 5.276 1 95.08 ? O1 HXA 202 B 1 
HETATM 3 O O2 HXA . . . D 2 32.203 -5.38 6.457 1 96.46 ? O2 HXA 202 B 1 
HETATM 4 C C2 HXA . . . D 2 32.077 -7.74 6.667 1 98.09 ? C2 HXA 202 B 1 
HETATM 5 C C3 HXA . . . D 2 31.266 -8.982 6.263 1 95.93 ? C3 HXA 202 B 1 
HETATM 6 C C4 HXA . . . D 2 31.839 -9.604 5.022 1 95.12 ? C4 HXA 202 B 1 
HETATM 7 C C5 HXA . . . D 2 31.012 -10.132 4.123 1 92.93 ? C5 HXA 202 B 1 
HETATM 8 C C6 HXA . . . D 2 31.588 -10.731 2.881 1 93.59 ? C6 HXA 202 B 1 
HETATM 9 C C7 HXA . . . D 2 30.987 -12.007 2.397 1 98.34 ? C7 HXA 202 B 1 
HETATM 10 C C8 HXA . . . D 2 30.645 -12.945 3.259 1 102.06 ? C8 HXA 202 B 1 
HETATM 11 C C9 HXA . . . D 2 30.068 -14.23 2.737 1 102.16 ? C9 HXA 202 B 1 
HETATM 12 C C10 HXA . . . D 2 30.956 -15.377 3.159 1 101.25 ? C10 HXA 202 B 1 
HETATM 13 C C11 HXA . . . D 2 32.284 -15.236 3.207 1 97.14 ? C11 HXA 202 B 1 
HETATM 14 C C12 HXA . . . D 2 33.153 -16.389 3.618 1 89.61 ? C12 HXA 202 B 1 
HETATM 15 C C13 HXA . . . D 2 33.822 -16.864 2.35 1 85.85 ? C13 HXA 202 B 1 
HETATM 16 C C14 HXA . . . D 2 35.062 -17.356 2.311 1 84.6 ? C14 HXA 202 B 1 
HETATM 17 C C15 HXA . . . D 2 35.905 -17.486 3.558 1 78.25 ? C15 HXA 202 B 1 
HETATM 18 C C16 HXA . . . D 2 37.227 -18.13 3.256 1 72.37 ? C16 HXA 202 B 1 
HETATM 19 C C17 HXA . . . D 2 37.257 -19.417 2.895 1 70.36 ? C17 HXA 202 B 1 
HETATM 20 C C18 HXA . . . D 2 38.535 -20.183 2.587 1 67.43 ? C18 HXA 202 B 1 
HETATM 21 C C19 HXA . . . D 2 39.637 -19.316 2.032 1 66.81 ? C19 HXA 202 B 1 
HETATM 22 C C20 HXA . . . D 2 40.871 -19.766 1.846 1 66.92 ? C20 HXA 202 B 1 
HETATM 23 C C21 HXA . . . D 2 41.309 -21.161 2.16 1 67.46 ? C21 HXA 202 B 1 
HETATM 24 C C22 HXA . . . D 2 42.82 -21.166 2.073 1 67.38 ? C22 HXA 202 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#