data_5Y5E
#
_model_server_result.job_id            pAKlQCW4JKMFtrexy6n3fw 
_model_server_result.datetime_utc      '2024-11-23 10:46:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y5e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":210}' 
#
_entry.id    5Y5E 
#
_exptl.entry_id    5Y5E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y5E 
_cell.length_a            48.726 
_cell.length_b            61.063 
_cell.length_c            63.356 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y5E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 42 A CYS 42 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 A SG CYS 48 A CYS 48 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 49 A CYS 49 1_555 A SG CYS 89 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 A SG CYS 58 A CYS 58 1_555 A SG CYS 82 A CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf7 A SG CYS 76 A CYS 76 1_555 A SG CYS 87 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc1 A O TYR 26 A TYR 26 1_555 I CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc2 A O GLY 28 A GLY 28 1_555 I CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 A O GLY 30 A GLY 30 1_555 I CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 A OD1 ASP 47 A ASP 47 1_555 I CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc5 A OD2 ASP 47 A ASP 47 1_555 I CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc6 A OG1 THR 81 A THR 81 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? 
metalc ? metalc7 C OAO 7W3 . A 7W3 202 1_555 I CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc8 C OAT 7W3 . A 7W3 202 1_555 I CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc9 K NA NA . A NA 210 1_555 L O HOH . A HOH 421 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5Y5E 
_atom_sites.fract_transf_matrix[1][1]    0.020523 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016377 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015784 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 1 GOL GOL . 
C 3 7W3 A 1 202 1 7W3 DRG . 
D 4 CL A 1 203 1 CL CL . 
E 4 CL A 1 204 2 CL CL . 
F 4 CL A 1 205 3 CL CL . 
G 4 CL A 1 206 4 CL CL . 
H 4 CL A 1 207 5 CL CL . 
I 5 CA A 1 208 1 CA CA . 
J 6 B3P A 1 209 1 B3P B3P . 
K 7 NA A 1 210 1 NA NA . 
L 8 HOH A 1 301 63 HOH HOH . 
L 8 HOH A 2 302 68 HOH HOH . 
L 8 HOH A 3 303 64 HOH HOH . 
L 8 HOH A 4 304 96 HOH HOH . 
L 8 HOH A 5 305 82 HOH HOH . 
L 8 HOH A 6 306 28 HOH HOH . 
L 8 HOH A 7 307 88 HOH HOH . 
L 8 HOH A 8 308 75 HOH HOH . 
L 8 HOH A 9 309 120 HOH HOH . 
L 8 HOH A 10 310 103 HOH HOH . 
L 8 HOH A 11 311 80 HOH HOH . 
L 8 HOH A 12 312 24 HOH HOH . 
L 8 HOH A 13 313 131 HOH HOH . 
L 8 HOH A 14 314 35 HOH HOH . 
L 8 HOH A 15 315 56 HOH HOH . 
L 8 HOH A 16 316 140 HOH HOH . 
L 8 HOH A 17 317 44 HOH HOH . 
L 8 HOH A 18 318 76 HOH HOH . 
L 8 HOH A 19 319 94 HOH HOH . 
L 8 HOH A 20 320 57 HOH HOH . 
L 8 HOH A 21 321 58 HOH HOH . 
L 8 HOH A 22 322 14 HOH HOH . 
L 8 HOH A 23 323 29 HOH HOH . 
L 8 HOH A 24 324 134 HOH HOH . 
L 8 HOH A 25 325 3 HOH HOH . 
L 8 HOH A 26 326 10 HOH HOH . 
L 8 HOH A 27 327 77 HOH HOH . 
L 8 HOH A 28 328 74 HOH HOH . 
L 8 HOH A 29 329 90 HOH HOH . 
L 8 HOH A 30 330 1 HOH HOH . 
L 8 HOH A 31 331 37 HOH HOH . 
L 8 HOH A 32 332 101 HOH HOH . 
L 8 HOH A 33 333 59 HOH HOH . 
L 8 HOH A 34 334 81 HOH HOH . 
L 8 HOH A 35 335 8 HOH HOH . 
L 8 HOH A 36 336 67 HOH HOH . 
L 8 HOH A 37 337 34 HOH HOH . 
L 8 HOH A 38 338 98 HOH HOH . 
L 8 HOH A 39 339 111 HOH HOH . 
L 8 HOH A 40 340 49 HOH HOH . 
L 8 HOH A 41 341 95 HOH HOH . 
L 8 HOH A 42 342 2 HOH HOH . 
L 8 HOH A 43 343 60 HOH HOH . 
L 8 HOH A 44 344 85 HOH HOH . 
L 8 HOH A 45 345 42 HOH HOH . 
L 8 HOH A 46 346 137 HOH HOH . 
L 8 HOH A 47 347 135 HOH HOH . 
L 8 HOH A 48 348 25 HOH HOH . 
L 8 HOH A 49 349 83 HOH HOH . 
L 8 HOH A 50 350 138 HOH HOH . 
L 8 HOH A 51 351 109 HOH HOH . 
L 8 HOH A 52 352 105 HOH HOH . 
L 8 HOH A 53 353 32 HOH HOH . 
L 8 HOH A 54 354 110 HOH HOH . 
L 8 HOH A 55 355 116 HOH HOH . 
L 8 HOH A 56 356 97 HOH HOH . 
L 8 HOH A 57 357 69 HOH HOH . 
L 8 HOH A 58 358 20 HOH HOH . 
L 8 HOH A 59 359 47 HOH HOH . 
L 8 HOH A 60 360 6 HOH HOH . 
L 8 HOH A 61 361 78 HOH HOH . 
L 8 HOH A 62 362 18 HOH HOH . 
L 8 HOH A 63 363 133 HOH HOH . 
L 8 HOH A 64 364 62 HOH HOH . 
L 8 HOH A 65 365 48 HOH HOH . 
L 8 HOH A 66 366 26 HOH HOH . 
L 8 HOH A 67 367 72 HOH HOH . 
L 8 HOH A 68 368 43 HOH HOH . 
L 8 HOH A 69 369 5 HOH HOH . 
L 8 HOH A 70 370 33 HOH HOH . 
L 8 HOH A 71 371 11 HOH HOH . 
L 8 HOH A 72 372 12 HOH HOH . 
L 8 HOH A 73 373 129 HOH HOH . 
L 8 HOH A 74 374 107 HOH HOH . 
L 8 HOH A 75 375 21 HOH HOH . 
L 8 HOH A 76 376 22 HOH HOH . 
L 8 HOH A 77 377 15 HOH HOH . 
L 8 HOH A 78 378 7 HOH HOH . 
L 8 HOH A 79 379 31 HOH HOH . 
L 8 HOH A 80 380 4 HOH HOH . 
L 8 HOH A 81 381 79 HOH HOH . 
L 8 HOH A 82 382 106 HOH HOH . 
L 8 HOH A 83 383 144 HOH HOH . 
L 8 HOH A 84 384 114 HOH HOH . 
L 8 HOH A 85 385 61 HOH HOH . 
L 8 HOH A 86 386 51 HOH HOH . 
L 8 HOH A 87 387 92 HOH HOH . 
L 8 HOH A 88 388 9 HOH HOH . 
L 8 HOH A 89 389 52 HOH HOH . 
L 8 HOH A 90 390 38 HOH HOH . 
L 8 HOH A 91 391 17 HOH HOH . 
L 8 HOH A 92 392 71 HOH HOH . 
L 8 HOH A 93 393 66 HOH HOH . 
L 8 HOH A 94 394 19 HOH HOH . 
L 8 HOH A 95 395 93 HOH HOH . 
L 8 HOH A 96 396 117 HOH HOH . 
L 8 HOH A 97 397 46 HOH HOH . 
L 8 HOH A 98 398 27 HOH HOH . 
L 8 HOH A 99 399 23 HOH HOH . 
L 8 HOH A 100 400 132 HOH HOH . 
L 8 HOH A 101 401 45 HOH HOH . 
L 8 HOH A 102 402 126 HOH HOH . 
L 8 HOH A 103 403 40 HOH HOH . 
L 8 HOH A 104 404 112 HOH HOH . 
L 8 HOH A 105 405 91 HOH HOH . 
L 8 HOH A 106 406 104 HOH HOH . 
L 8 HOH A 107 407 73 HOH HOH . 
L 8 HOH A 108 408 65 HOH HOH . 
L 8 HOH A 109 409 102 HOH HOH . 
L 8 HOH A 110 410 13 HOH HOH . 
L 8 HOH A 111 411 119 HOH HOH . 
L 8 HOH A 112 412 41 HOH HOH . 
L 8 HOH A 113 413 53 HOH HOH . 
L 8 HOH A 114 414 113 HOH HOH . 
L 8 HOH A 115 415 100 HOH HOH . 
L 8 HOH A 116 416 118 HOH HOH . 
L 8 HOH A 117 417 125 HOH HOH . 
L 8 HOH A 118 418 121 HOH HOH . 
L 8 HOH A 119 419 115 HOH HOH . 
L 8 HOH A 120 420 128 HOH HOH . 
L 8 HOH A 121 421 30 HOH HOH . 
L 8 HOH A 122 422 139 HOH HOH . 
L 8 HOH A 123 423 143 HOH HOH . 
L 8 HOH A 124 424 122 HOH HOH . 
L 8 HOH A 125 425 36 HOH HOH . 
L 8 HOH A 126 426 54 HOH HOH . 
L 8 HOH A 127 427 99 HOH HOH . 
L 8 HOH A 128 428 89 HOH HOH . 
L 8 HOH A 129 429 70 HOH HOH . 
L 8 HOH A 130 430 124 HOH HOH . 
L 8 HOH A 131 431 55 HOH HOH . 
L 8 HOH A 132 432 108 HOH HOH . 
L 8 HOH A 133 433 16 HOH HOH . 
L 8 HOH A 134 434 87 HOH HOH . 
L 8 HOH A 135 435 50 HOH HOH . 
L 8 HOH A 136 436 39 HOH HOH . 
L 8 HOH A 137 437 130 HOH HOH . 
L 8 HOH A 138 438 142 HOH HOH . 
L 8 HOH A 139 439 123 HOH HOH . 
L 8 HOH A 140 440 127 HOH HOH . 
L 8 HOH A 141 441 86 HOH HOH . 
L 8 HOH A 142 442 141 HOH HOH . 
L 8 HOH A 143 443 136 HOH HOH . 
L 8 HOH A 144 444 84 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               11.234 
_atom_site.Cartn_y               2.145 
_atom_site.Cartn_z               1.144 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.81 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           210 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#