data_5Y5N # _model_server_result.job_id GLqs1rBUj5Uh5lLVMsbYUA _model_server_result.datetime_utc '2024-11-23 08:38:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5Y5N # _exptl.entry_id 5Y5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.396 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[3-(2-phenylethoxy)phenyl]amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y5N _cell.length_a 50.85 _cell.length_b 57.98 _cell.length_c 124.532 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 164 A CYS 195 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A SG CYS 169 A CYS 200 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 A SG CYS 190 A CYS 221 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 A SG CYS 193 A CYS 224 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C21 H20 N2 O2' _chem_comp.formula_weight 332.396 _chem_comp.id 8NO _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[3-(2-phenylethoxy)phenyl]amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C7 8NO sing 1 n n O8 C7 8NO doub 2 n n C7 C5 8NO sing 3 n n C5 C6 8NO doub 4 n y C5 C4 8NO sing 5 n y C6 C1 8NO sing 6 n y N10 C4 8NO sing 7 n n N10 C11 8NO sing 8 n n C4 C3 8NO doub 9 n y C1 C2 8NO doub 10 n y C11 C16 8NO doub 11 n y C11 C12 8NO sing 12 n y C16 C15 8NO sing 13 n y C3 C2 8NO sing 14 n y C12 C13 8NO doub 15 n y C15 O11 8NO sing 16 n n C15 C14 8NO doub 17 n y O11 C17 8NO sing 18 n n C13 C14 8NO sing 19 n y C22 C23 8NO doub 20 n y C22 C21 8NO sing 21 n y C23 C24 8NO sing 22 n y C21 C20 8NO doub 23 n y C24 C18 8NO sing 24 n n C24 C19 8NO doub 25 n y C20 C19 8NO sing 26 n y C17 C18 8NO sing 27 n n N9 H1 8NO sing 28 n n N9 H2 8NO sing 29 n n C6 H3 8NO sing 30 n n C1 H4 8NO sing 31 n n C3 H5 8NO sing 32 n n C2 H6 8NO sing 33 n n N10 H7 8NO sing 34 n n C16 H8 8NO sing 35 n n C14 H9 8NO sing 36 n n C13 H10 8NO sing 37 n n C12 H11 8NO sing 38 n n C17 H12 8NO sing 39 n n C17 H13 8NO sing 40 n n C18 H14 8NO sing 41 n n C18 H15 8NO sing 42 n n C23 H16 8NO sing 43 n n C22 H17 8NO sing 44 n n C21 H18 8NO sing 45 n n C20 H19 8NO sing 46 n n C19 H20 8NO sing 47 n n # _atom_sites.entry_id 5Y5N _atom_sites.fract_transf_matrix[1][1] 0.019666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1001 1001 ZN ZN . C 3 8NO A 1 1002 1 8NO 387 . D 4 HOH A 1 1101 131 HOH HOH . D 4 HOH A 2 1102 13 HOH HOH . D 4 HOH A 3 1103 29 HOH HOH . D 4 HOH A 4 1104 56 HOH HOH . D 4 HOH A 5 1105 59 HOH HOH . D 4 HOH A 6 1106 115 HOH HOH . D 4 HOH A 7 1107 77 HOH HOH . D 4 HOH A 8 1108 1 HOH HOH . D 4 HOH A 9 1109 69 HOH HOH . D 4 HOH A 10 1110 130 HOH HOH . D 4 HOH A 11 1111 76 HOH HOH . D 4 HOH A 12 1112 4 HOH HOH . D 4 HOH A 13 1113 40 HOH HOH . D 4 HOH A 14 1114 27 HOH HOH . D 4 HOH A 15 1115 44 HOH HOH . D 4 HOH A 16 1116 37 HOH HOH . D 4 HOH A 17 1117 31 HOH HOH . D 4 HOH A 18 1118 10 HOH HOH . D 4 HOH A 19 1119 11 HOH HOH . D 4 HOH A 20 1120 78 HOH HOH . D 4 HOH A 21 1121 45 HOH HOH . D 4 HOH A 22 1122 94 HOH HOH . D 4 HOH A 23 1123 17 HOH HOH . D 4 HOH A 24 1124 58 HOH HOH . D 4 HOH A 25 1125 14 HOH HOH . D 4 HOH A 26 1126 80 HOH HOH . D 4 HOH A 27 1127 114 HOH HOH . D 4 HOH A 28 1128 19 HOH HOH . D 4 HOH A 29 1129 3 HOH HOH . D 4 HOH A 30 1130 39 HOH HOH . D 4 HOH A 31 1131 83 HOH HOH . D 4 HOH A 32 1132 23 HOH HOH . D 4 HOH A 33 1133 36 HOH HOH . D 4 HOH A 34 1134 8 HOH HOH . D 4 HOH A 35 1135 50 HOH HOH . D 4 HOH A 36 1136 34 HOH HOH . D 4 HOH A 37 1137 88 HOH HOH . D 4 HOH A 38 1138 84 HOH HOH . D 4 HOH A 39 1139 49 HOH HOH . D 4 HOH A 40 1140 67 HOH HOH . D 4 HOH A 41 1141 22 HOH HOH . D 4 HOH A 42 1142 25 HOH HOH . D 4 HOH A 43 1143 7 HOH HOH . D 4 HOH A 44 1144 86 HOH HOH . D 4 HOH A 45 1145 2 HOH HOH . D 4 HOH A 46 1146 20 HOH HOH . D 4 HOH A 47 1147 118 HOH HOH . D 4 HOH A 48 1148 12 HOH HOH . D 4 HOH A 49 1149 43 HOH HOH . D 4 HOH A 50 1150 60 HOH HOH . D 4 HOH A 51 1151 105 HOH HOH . D 4 HOH A 52 1152 71 HOH HOH . D 4 HOH A 53 1153 9 HOH HOH . D 4 HOH A 54 1154 61 HOH HOH . D 4 HOH A 55 1155 28 HOH HOH . D 4 HOH A 56 1156 5 HOH HOH . D 4 HOH A 57 1157 63 HOH HOH . D 4 HOH A 58 1158 87 HOH HOH . D 4 HOH A 59 1159 30 HOH HOH . D 4 HOH A 60 1160 38 HOH HOH . D 4 HOH A 61 1161 104 HOH HOH . D 4 HOH A 62 1162 26 HOH HOH . D 4 HOH A 63 1163 68 HOH HOH . D 4 HOH A 64 1164 24 HOH HOH . D 4 HOH A 65 1165 64 HOH HOH . D 4 HOH A 66 1166 136 HOH HOH . D 4 HOH A 67 1167 126 HOH HOH . D 4 HOH A 68 1168 48 HOH HOH . D 4 HOH A 69 1169 54 HOH HOH . D 4 HOH A 70 1170 73 HOH HOH . D 4 HOH A 71 1171 47 HOH HOH . D 4 HOH A 72 1172 41 HOH HOH . D 4 HOH A 73 1173 21 HOH HOH . D 4 HOH A 74 1174 46 HOH HOH . D 4 HOH A 75 1175 85 HOH HOH . D 4 HOH A 76 1176 129 HOH HOH . D 4 HOH A 77 1177 42 HOH HOH . D 4 HOH A 78 1178 18 HOH HOH . D 4 HOH A 79 1179 108 HOH HOH . D 4 HOH A 80 1180 128 HOH HOH . D 4 HOH A 81 1181 33 HOH HOH . D 4 HOH A 82 1182 113 HOH HOH . D 4 HOH A 83 1183 66 HOH HOH . D 4 HOH A 84 1184 135 HOH HOH . D 4 HOH A 85 1185 35 HOH HOH . D 4 HOH A 86 1186 101 HOH HOH . D 4 HOH A 87 1187 52 HOH HOH . D 4 HOH A 88 1188 117 HOH HOH . D 4 HOH A 89 1189 120 HOH HOH . D 4 HOH A 90 1190 72 HOH HOH . D 4 HOH A 91 1191 32 HOH HOH . D 4 HOH A 92 1192 97 HOH HOH . D 4 HOH A 93 1193 125 HOH HOH . D 4 HOH A 94 1194 122 HOH HOH . D 4 HOH A 95 1195 16 HOH HOH . D 4 HOH A 96 1196 121 HOH HOH . D 4 HOH A 97 1197 132 HOH HOH . D 4 HOH A 98 1198 134 HOH HOH . D 4 HOH A 99 1199 123 HOH HOH . D 4 HOH A 100 1200 133 HOH HOH . D 4 HOH A 101 1201 124 HOH HOH . D 4 HOH A 102 1202 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 8NO . . . C 3 49.096 54.718 19.991 1 35.48 ? O8 8NO 1002 A 1 HETATM 2 C C7 8NO . . . C 3 49.042 53.51 20.346 1 32.72 ? C7 8NO 1002 A 1 HETATM 3 N N9 8NO . . . C 3 48.173 52.696 19.732 1 28.41 ? N9 8NO 1002 A 1 HETATM 4 C C5 8NO . . . C 3 49.866 52.974 21.388 1 30.12 ? C5 8NO 1002 A 1 HETATM 5 C C6 8NO . . . C 3 50.111 51.566 21.418 1 25.59 ? C6 8NO 1002 A 1 HETATM 6 C C1 8NO . . . C 3 50.906 51.009 22.416 1 24.32 ? C1 8NO 1002 A 1 HETATM 7 C C4 8NO . . . C 3 50.445 53.77 22.394 1 31.27 ? C4 8NO 1002 A 1 HETATM 8 C C3 8NO . . . C 3 51.253 53.218 23.371 1 27.21 ? C3 8NO 1002 A 1 HETATM 9 C C2 8NO . . . C 3 51.48 51.829 23.394 1 22.94 ? C2 8NO 1002 A 1 HETATM 10 N N10 8NO . . . C 3 50.129 55.143 22.348 1 32.63 ? N10 8NO 1002 A 1 HETATM 11 C C11 8NO . . . C 3 50.74 56.134 23.1 1 33.76 ? C11 8NO 1002 A 1 HETATM 12 C C16 8NO . . . C 3 50.001 57.325 23.305 1 35.85 ? C16 8NO 1002 A 1 HETATM 13 C C15 8NO . . . C 3 50.569 58.405 23.998 1 40.25 ? C15 8NO 1002 A 1 HETATM 14 C C14 8NO . . . C 3 51.841 58.277 24.566 1 36.35 ? C14 8NO 1002 A 1 HETATM 15 C C13 8NO . . . C 3 52.593 57.114 24.331 1 33.67 ? C13 8NO 1002 A 1 HETATM 16 C C12 8NO . . . C 3 52.031 56.045 23.614 1 32.98 ? C12 8NO 1002 A 1 HETATM 17 O O11 8NO . . . C 3 49.866 59.602 24.111 1 45.3 ? O11 8NO 1002 A 1 HETATM 18 C C17 8NO . . . C 3 48.886 59.51 25.143 1 49 ? C17 8NO 1002 A 1 HETATM 19 C C18 8NO . . . C 3 48.05 60.805 25.211 1 51.95 ? C18 8NO 1002 A 1 HETATM 20 C C24 8NO . . . C 3 46.564 60.511 25.052 1 53.72 ? C24 8NO 1002 A 1 HETATM 21 C C23 8NO . . . C 3 46.133 59.243 24.638 1 55.9 ? C23 8NO 1002 A 1 HETATM 22 C C22 8NO . . . C 3 44.768 58.997 24.443 1 55.49 ? C22 8NO 1002 A 1 HETATM 23 C C21 8NO . . . C 3 43.83 59.986 24.751 1 55.42 ? C21 8NO 1002 A 1 HETATM 24 C C20 8NO . . . C 3 44.257 61.263 25.131 1 53.93 ? C20 8NO 1002 A 1 HETATM 25 C C19 8NO . . . C 3 45.622 61.517 25.306 1 56.04 ? C19 8NO 1002 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #