data_5Y5T # _model_server_result.job_id nFmiCnyOGDJyuX91lMNx8Q _model_server_result.datetime_utc '2025-08-31 18:51:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5Y5T # _exptl.entry_id 5Y5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[(1S,2S)-2-azanylcyclohexyl]amino]-4-[(4-methylsulfonylphenyl)amino]-6H-pyrido[4,3-d]pyrimidin-5-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.59 _cell.angle_gamma 90 _cell.entry_id 5Y5T _cell.length_a 40.246 _cell.length_b 84.979 _cell.length_c 42.142 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H24 N6 O3 S' _chem_comp.formula_weight 428.508 _chem_comp.id 8OR _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[(1S,2S)-2-azanylcyclohexyl]amino]-4-[(4-methylsulfonylphenyl)amino]-6H-pyrido[4,3-d]pyrimidin-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1S,2S)-2-((4-((4-(methylsulfonyl)phenyl)amino)-5-oxo-5,6-dihydropyrido[4,3-d]pyrimidin-2-yl)amino)cyclohexan-1-aminium # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAN 8OR sing 1 n n CAL CAK 8OR sing 2 n n CAN CBC 8OR sing 3 n n CBC NAS 8OR sing 4 n n CBC CBB 8OR sing 5 n n NAS C2 8OR sing 6 n n CAK CAM 8OR sing 7 n n C2 N3 8OR doub 8 n y C2 N1 8OR sing 9 n y CAM CBB 8OR sing 10 n n N3 C4 8OR sing 11 n y CBB NAB 8OR sing 12 n n N1 C6 8OR doub 13 n y CAA SBD 8OR sing 14 n n C4 CAJ 8OR sing 15 n n C4 C5 8OR doub 16 n y CAJ CAO 8OR doub 17 n n CAH CAF 8OR doub 18 n y CAH CAV 8OR sing 19 n y CAF CAU 8OR sing 20 n y C6 C5 8OR sing 21 n y C6 NAR 8OR sing 22 n n C5 CAY 8OR sing 23 n n OAE SBD 8OR doub 24 n n CAO NAT 8OR sing 25 n n SBD CAV 8OR sing 26 n n SBD OAD 8OR doub 27 n n CAU NAR 8OR sing 28 n n CAU CAG 8OR doub 29 n y CAV CAI 8OR doub 30 n y CAY NAT 8OR sing 31 n n CAY OAC 8OR doub 32 n n CAI CAG 8OR sing 33 n y CAA H1 8OR sing 34 n n CAA H2 8OR sing 35 n n CAA H3 8OR sing 36 n n CAI H4 8OR sing 37 n n CAG H5 8OR sing 38 n n CAH H6 8OR sing 39 n n CAF H7 8OR sing 40 n n NAR H8 8OR sing 41 n n NAT H9 8OR sing 42 n n CAO H10 8OR sing 43 n n CAJ H11 8OR sing 44 n n NAS H12 8OR sing 45 n n CBC H13 8OR sing 46 n n CAN H14 8OR sing 47 n n CAN H15 8OR sing 48 n n CAL H16 8OR sing 49 n n CAL H17 8OR sing 50 n n CAK H18 8OR sing 51 n n CAK H19 8OR sing 52 n n CAM H20 8OR sing 53 n n CAM H21 8OR sing 54 n n CBB H22 8OR sing 55 n n NAB H23 8OR sing 56 n n NAB H24 8OR sing 57 n n # _atom_sites.entry_id 5Y5T _atom_sites.fract_transf_matrix[1][1] 0.024847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004197 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8OR A 1 701 1 8OR DRG . C 3 HOH A 1 801 5 HOH HOH . C 3 HOH A 2 802 82 HOH HOH . C 3 HOH A 3 803 110 HOH HOH . C 3 HOH A 4 804 132 HOH HOH . C 3 HOH A 5 805 168 HOH HOH . C 3 HOH A 6 806 143 HOH HOH . C 3 HOH A 7 807 69 HOH HOH . C 3 HOH A 8 808 180 HOH HOH . C 3 HOH A 9 809 50 HOH HOH . C 3 HOH A 10 810 167 HOH HOH . C 3 HOH A 11 811 54 HOH HOH . C 3 HOH A 12 812 171 HOH HOH . C 3 HOH A 13 813 155 HOH HOH . C 3 HOH A 14 814 86 HOH HOH . C 3 HOH A 15 815 75 HOH HOH . C 3 HOH A 16 816 39 HOH HOH . C 3 HOH A 17 817 154 HOH HOH . C 3 HOH A 18 818 42 HOH HOH . C 3 HOH A 19 819 183 HOH HOH . C 3 HOH A 20 820 172 HOH HOH . C 3 HOH A 21 821 68 HOH HOH . C 3 HOH A 22 822 121 HOH HOH . C 3 HOH A 23 823 152 HOH HOH . C 3 HOH A 24 824 265 HOH HOH . C 3 HOH A 25 825 151 HOH HOH . C 3 HOH A 26 826 217 HOH HOH . C 3 HOH A 27 827 173 HOH HOH . C 3 HOH A 28 828 140 HOH HOH . C 3 HOH A 29 829 73 HOH HOH . C 3 HOH A 30 830 19 HOH HOH . C 3 HOH A 31 831 224 HOH HOH . C 3 HOH A 32 832 197 HOH HOH . C 3 HOH A 33 833 92 HOH HOH . C 3 HOH A 34 834 174 HOH HOH . C 3 HOH A 35 835 97 HOH HOH . C 3 HOH A 36 836 7 HOH HOH . C 3 HOH A 37 837 33 HOH HOH . C 3 HOH A 38 838 138 HOH HOH . C 3 HOH A 39 839 270 HOH HOH . C 3 HOH A 40 840 8 HOH HOH . C 3 HOH A 41 841 1 HOH HOH . C 3 HOH A 42 842 32 HOH HOH . C 3 HOH A 43 843 184 HOH HOH . C 3 HOH A 44 844 238 HOH HOH . C 3 HOH A 45 845 218 HOH HOH . C 3 HOH A 46 846 163 HOH HOH . C 3 HOH A 47 847 6 HOH HOH . C 3 HOH A 48 848 141 HOH HOH . C 3 HOH A 49 849 204 HOH HOH . C 3 HOH A 50 850 78 HOH HOH . C 3 HOH A 51 851 27 HOH HOH . C 3 HOH A 52 852 59 HOH HOH . C 3 HOH A 53 853 150 HOH HOH . C 3 HOH A 54 854 145 HOH HOH . C 3 HOH A 55 855 198 HOH HOH . C 3 HOH A 56 856 104 HOH HOH . C 3 HOH A 57 857 22 HOH HOH . C 3 HOH A 58 858 67 HOH HOH . C 3 HOH A 59 859 20 HOH HOH . C 3 HOH A 60 860 182 HOH HOH . C 3 HOH A 61 861 76 HOH HOH . C 3 HOH A 62 862 44 HOH HOH . C 3 HOH A 63 863 263 HOH HOH . C 3 HOH A 64 864 159 HOH HOH . C 3 HOH A 65 865 60 HOH HOH . C 3 HOH A 66 866 116 HOH HOH . C 3 HOH A 67 867 12 HOH HOH . C 3 HOH A 68 868 90 HOH HOH . C 3 HOH A 69 869 165 HOH HOH . C 3 HOH A 70 870 266 HOH HOH . C 3 HOH A 71 871 156 HOH HOH . C 3 HOH A 72 872 52 HOH HOH . C 3 HOH A 73 873 26 HOH HOH . C 3 HOH A 74 874 201 HOH HOH . C 3 HOH A 75 875 146 HOH HOH . C 3 HOH A 76 876 77 HOH HOH . C 3 HOH A 77 877 13 HOH HOH . C 3 HOH A 78 878 9 HOH HOH . C 3 HOH A 79 879 126 HOH HOH . C 3 HOH A 80 880 37 HOH HOH . C 3 HOH A 81 881 63 HOH HOH . C 3 HOH A 82 882 98 HOH HOH . C 3 HOH A 83 883 18 HOH HOH . C 3 HOH A 84 884 261 HOH HOH . C 3 HOH A 85 885 144 HOH HOH . C 3 HOH A 86 886 74 HOH HOH . C 3 HOH A 87 887 225 HOH HOH . C 3 HOH A 88 888 203 HOH HOH . C 3 HOH A 89 889 136 HOH HOH . C 3 HOH A 90 890 4 HOH HOH . C 3 HOH A 91 891 21 HOH HOH . C 3 HOH A 92 892 191 HOH HOH . C 3 HOH A 93 893 278 HOH HOH . C 3 HOH A 94 894 107 HOH HOH . C 3 HOH A 95 895 206 HOH HOH . C 3 HOH A 96 896 17 HOH HOH . C 3 HOH A 97 897 279 HOH HOH . C 3 HOH A 98 898 267 HOH HOH . C 3 HOH A 99 899 269 HOH HOH . C 3 HOH A 100 900 23 HOH HOH . C 3 HOH A 101 901 192 HOH HOH . C 3 HOH A 102 902 161 HOH HOH . C 3 HOH A 103 903 148 HOH HOH . C 3 HOH A 104 904 38 HOH HOH . C 3 HOH A 105 905 41 HOH HOH . C 3 HOH A 106 906 275 HOH HOH . C 3 HOH A 107 907 274 HOH HOH . C 3 HOH A 108 908 181 HOH HOH . C 3 HOH A 109 909 213 HOH HOH . C 3 HOH A 110 910 200 HOH HOH . C 3 HOH A 111 911 14 HOH HOH . C 3 HOH A 112 912 66 HOH HOH . C 3 HOH A 113 913 147 HOH HOH . C 3 HOH A 114 914 28 HOH HOH . C 3 HOH A 115 915 223 HOH HOH . C 3 HOH A 116 916 36 HOH HOH . C 3 HOH A 117 917 264 HOH HOH . C 3 HOH A 118 918 268 HOH HOH . C 3 HOH A 119 919 87 HOH HOH . C 3 HOH A 120 920 79 HOH HOH . C 3 HOH A 121 921 237 HOH HOH . C 3 HOH A 122 922 10 HOH HOH . C 3 HOH A 123 923 160 HOH HOH . C 3 HOH A 124 924 55 HOH HOH . C 3 HOH A 125 925 142 HOH HOH . C 3 HOH A 126 926 162 HOH HOH . C 3 HOH A 127 927 71 HOH HOH . C 3 HOH A 128 928 194 HOH HOH . C 3 HOH A 129 929 40 HOH HOH . C 3 HOH A 130 930 15 HOH HOH . C 3 HOH A 131 931 277 HOH HOH . C 3 HOH A 132 932 169 HOH HOH . C 3 HOH A 133 933 16 HOH HOH . C 3 HOH A 134 934 195 HOH HOH . C 3 HOH A 135 935 186 HOH HOH . C 3 HOH A 136 936 259 HOH HOH . C 3 HOH A 137 937 273 HOH HOH . C 3 HOH A 138 938 216 HOH HOH . C 3 HOH A 139 939 153 HOH HOH . C 3 HOH A 140 940 94 HOH HOH . C 3 HOH A 141 941 234 HOH HOH . C 3 HOH A 142 942 251 HOH HOH . C 3 HOH A 143 943 239 HOH HOH . C 3 HOH A 144 944 257 HOH HOH . C 3 HOH A 145 945 249 HOH HOH . C 3 HOH A 146 946 149 HOH HOH . C 3 HOH A 147 947 248 HOH HOH . C 3 HOH A 148 948 228 HOH HOH . C 3 HOH A 149 949 211 HOH HOH . C 3 HOH A 150 950 253 HOH HOH . C 3 HOH A 151 951 243 HOH HOH . C 3 HOH A 152 952 220 HOH HOH . C 3 HOH A 153 953 240 HOH HOH . C 3 HOH A 154 954 164 HOH HOH . C 3 HOH A 155 955 199 HOH HOH . C 3 HOH A 156 956 246 HOH HOH . C 3 HOH A 157 957 258 HOH HOH . C 3 HOH A 158 958 177 HOH HOH . C 3 HOH A 159 959 242 HOH HOH . C 3 HOH A 160 960 235 HOH HOH . C 3 HOH A 161 961 241 HOH HOH . C 3 HOH A 162 962 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 8OR . . . B 2 11.988 -2.248 12.128 1 33.84 ? C4 8OR 701 A 1 HETATM 2 C C5 8OR . . . B 2 12.728 -1.264 12.811 1 30.82 ? C5 8OR 701 A 1 HETATM 3 C C6 8OR . . . B 2 14.137 -1.213 12.594 1 32.81 ? C6 8OR 701 A 1 HETATM 4 N N1 8OR . . . B 2 14.704 -2.134 11.751 1 34.25 ? N1 8OR 701 A 1 HETATM 5 N N3 8OR . . . B 2 12.617 -3.103 11.31 1 34.89 ? N3 8OR 701 A 1 HETATM 6 C CAA 8OR . . . B 2 21.028 2.041 11.881 1 42.31 ? CAA 8OR 701 A 1 HETATM 7 S SBD 8OR . . . B 2 20.686 0.862 13.169 1 44.91 ? SBD 8OR 701 A 1 HETATM 8 O OAD 8OR . . . B 2 21.074 1.471 14.477 1 43.04 ? OAD 8OR 701 A 1 HETATM 9 O OAE 8OR . . . B 2 21.392 -0.445 12.895 1 43.09 ? OAE 8OR 701 A 1 HETATM 10 C CAV 8OR . . . B 2 18.958 0.538 13.193 1 38.06 ? CAV 8OR 701 A 1 HETATM 11 C CAI 8OR . . . B 2 18.085 1.327 13.944 1 36.02 ? CAI 8OR 701 A 1 HETATM 12 C CAG 8OR . . . B 2 16.714 1.036 13.952 1 35.4 ? CAG 8OR 701 A 1 HETATM 13 C CAH 8OR . . . B 2 18.491 -0.524 12.444 1 34.73 ? CAH 8OR 701 A 1 HETATM 14 C CAF 8OR . . . B 2 17.125 -0.81 12.45 1 35.46 ? CAF 8OR 701 A 1 HETATM 15 C CAU 8OR . . . B 2 16.212 -0.042 13.193 1 32.72 ? CAU 8OR 701 A 1 HETATM 16 N NAR 8OR . . . B 2 14.874 -0.274 13.248 1 31.35 ? NAR 8OR 701 A 1 HETATM 17 C CAY 8OR . . . B 2 12.034 -0.375 13.673 1 30.08 ? CAY 8OR 701 A 1 HETATM 18 O OAC 8OR . . . B 2 12.613 0.508 14.313 1 27.76 ? OAC 8OR 701 A 1 HETATM 19 N NAT 8OR . . . B 2 10.662 -0.499 13.812 1 28.78 ? NAT 8OR 701 A 1 HETATM 20 C CAO 8OR . . . B 2 9.951 -1.489 13.128 1 30.65 ? CAO 8OR 701 A 1 HETATM 21 C CAJ 8OR . . . B 2 10.601 -2.374 12.275 1 30.14 ? CAJ 8OR 701 A 1 HETATM 22 C C2 8OR . . . B 2 13.953 -3.077 11.126 1 40.28 ? C2 8OR 701 A 1 HETATM 23 N NAS 8OR . . . B 2 14.436 -4.001 10.275 1 45.31 ? NAS 8OR 701 A 1 HETATM 24 C CBC 8OR . . . B 2 15.817 -4.539 10.193 1 53.8 ? CBC 8OR 701 A 1 HETATM 25 C CAN 8OR . . . B 2 16.793 -3.466 9.686 1 57.14 ? CAN 8OR 701 A 1 HETATM 26 C CAL 8OR . . . B 2 18.162 -4.103 9.393 1 61.08 ? CAL 8OR 701 A 1 HETATM 27 C CAK 8OR . . . B 2 18.715 -4.795 10.649 1 60.21 ? CAK 8OR 701 A 1 HETATM 28 C CAM 8OR . . . B 2 17.742 -5.848 11.212 1 59.13 ? CAM 8OR 701 A 1 HETATM 29 C CBB 8OR . . . B 2 16.33 -5.252 11.476 1 58.28 ? CBB 8OR 701 A 1 HETATM 30 N NAB 8OR . . . B 2 15.423 -6.338 11.937 1 54.29 ? NAB 8OR 701 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #