data_5Y5U # _model_server_result.job_id -vR9jNGfgbB2jM_U3sn5ug _model_server_result.datetime_utc '2024-12-22 01:18:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 5Y5U # _exptl.entry_id 5Y5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.426 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(1-methylindazol-5-yl)amino]-2-(4-oxidanylpiperidin-1-yl)-8H-pyrido[4,3-d]pyrimidin-5-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 79.83 _cell.angle_beta 90.78 _cell.angle_gamma 79.6 _cell.entry_id 5Y5U _cell.length_a 40.155 _cell.length_b 42.013 _cell.length_c 87.66 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H21 N7 O2' _chem_comp.formula_weight 391.426 _chem_comp.id 8OU _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(1-methylindazol-5-yl)amino]-2-(4-oxidanylpiperidin-1-yl)-8H-pyrido[4,3-d]pyrimidin-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-(4-hydroxypiperidin-1-yl)-4-((1-methyl-1H-indazol-5-yl)amino)pyrido[4,3-d]pyrimidin-5(6H)-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 8OU doub 1 n y C4 N3 8OU sing 2 n y C4 CAF 8OU sing 3 n n C5 C6 8OU sing 4 n y C5 CAV 8OU sing 5 n n C6 N1 8OU doub 6 n y C6 NAQ 8OU sing 7 n n N1 C2 8OU sing 8 n y N3 C2 8OU doub 9 n y CAL CAJ 8OU sing 10 n n CAL NBB 8OU sing 11 n n CAJ CBA 8OU sing 12 n n CBA OAC 8OU sing 13 n n CBA CAK 8OU sing 14 n n CAK CAM 8OU sing 15 n n CAM NBB 8OU sing 16 n n NBB C2 8OU sing 17 n n CAF CAD 8OU sing 18 n n CAD NAR 8OU doub 19 n n NAR CAV 8OU sing 20 n n CAV OAB 8OU doub 21 n n NAQ CAS 8OU sing 22 n n CAS CAI 8OU doub 23 n y CAS CAE 8OU sing 24 n y CAI CAW 8OU sing 25 n y CAW CAH 8OU sing 26 n y CAW CAY 8OU doub 27 n y CAH NAN 8OU doub 28 n y NAN NBC 8OU sing 29 n y NBC CAA 8OU sing 30 n n NBC CAY 8OU sing 31 n y CAY CAG 8OU sing 32 n y CAG CAE 8OU doub 33 n y CAL H1 8OU sing 34 n n CAL H2 8OU sing 35 n n CAJ H3 8OU sing 36 n n CAJ H4 8OU sing 37 n n CBA H5 8OU sing 38 n n OAC H6 8OU sing 39 n n CAK H7 8OU sing 40 n n CAK H8 8OU sing 41 n n CAM H9 8OU sing 42 n n CAM H10 8OU sing 43 n n CAF H11 8OU sing 44 n n CAF H12 8OU sing 45 n n CAD H13 8OU sing 46 n n NAQ H14 8OU sing 47 n n CAI H15 8OU sing 48 n n CAH H16 8OU sing 49 n n CAA H17 8OU sing 50 n n CAA H18 8OU sing 51 n n CAA H19 8OU sing 52 n n CAG H20 8OU sing 53 n n CAE H21 8OU sing 54 n n # _atom_sites.entry_id 5Y5U _atom_sites.fract_transf_matrix[1][1] 0.024903 _atom_sites.fract_transf_matrix[1][2] -0.004572 _atom_sites.fract_transf_matrix[1][3] 0.001189 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0242 _atom_sites.fract_transf_matrix[2][3] -0.00448 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8OU A 1 701 1 8OU DRG . D 2 8OU B 1 701 1 8OU DRG . E 3 HOH A 1 801 1 HOH HOH . E 3 HOH A 2 802 39 HOH HOH . E 3 HOH A 3 803 47 HOH HOH . E 3 HOH A 4 804 14 HOH HOH . E 3 HOH A 5 805 13 HOH HOH . E 3 HOH A 6 806 64 HOH HOH . E 3 HOH A 7 807 66 HOH HOH . E 3 HOH A 8 808 25 HOH HOH . E 3 HOH A 9 809 23 HOH HOH . E 3 HOH A 10 810 5 HOH HOH . E 3 HOH A 11 811 69 HOH HOH . E 3 HOH A 12 812 22 HOH HOH . E 3 HOH A 13 813 9 HOH HOH . E 3 HOH A 14 814 26 HOH HOH . E 3 HOH A 15 815 16 HOH HOH . E 3 HOH A 16 816 48 HOH HOH . E 3 HOH A 17 817 6 HOH HOH . E 3 HOH A 18 818 2 HOH HOH . E 3 HOH A 19 819 10 HOH HOH . E 3 HOH A 20 820 57 HOH HOH . E 3 HOH A 21 821 58 HOH HOH . E 3 HOH A 22 822 29 HOH HOH . E 3 HOH A 23 823 43 HOH HOH . E 3 HOH A 24 824 19 HOH HOH . E 3 HOH A 25 825 46 HOH HOH . E 3 HOH A 26 826 7 HOH HOH . E 3 HOH A 27 827 38 HOH HOH . E 3 HOH A 28 828 24 HOH HOH . E 3 HOH A 29 829 4 HOH HOH . E 3 HOH A 30 830 17 HOH HOH . E 3 HOH A 31 831 62 HOH HOH . E 3 HOH A 32 832 34 HOH HOH . E 3 HOH A 33 833 59 HOH HOH . E 3 HOH A 34 834 50 HOH HOH . E 3 HOH A 35 835 30 HOH HOH . E 3 HOH A 36 836 63 HOH HOH . E 3 HOH A 37 837 44 HOH HOH . E 3 HOH A 38 838 28 HOH HOH . E 3 HOH A 39 839 52 HOH HOH . E 3 HOH A 40 840 72 HOH HOH . E 3 HOH A 41 841 53 HOH HOH . E 3 HOH A 42 842 73 HOH HOH . F 3 HOH B 1 801 37 HOH HOH . F 3 HOH B 2 802 20 HOH HOH . F 3 HOH B 3 803 21 HOH HOH . F 3 HOH B 4 804 11 HOH HOH . F 3 HOH B 5 805 27 HOH HOH . F 3 HOH B 6 806 61 HOH HOH . F 3 HOH B 7 807 32 HOH HOH . F 3 HOH B 8 808 12 HOH HOH . F 3 HOH B 9 809 3 HOH HOH . F 3 HOH B 10 810 18 HOH HOH . F 3 HOH B 11 811 68 HOH HOH . F 3 HOH B 12 812 65 HOH HOH . F 3 HOH B 13 813 60 HOH HOH . F 3 HOH B 14 814 42 HOH HOH . F 3 HOH B 15 815 49 HOH HOH . F 3 HOH B 16 816 33 HOH HOH . F 3 HOH B 17 817 15 HOH HOH . F 3 HOH B 18 818 67 HOH HOH . F 3 HOH B 19 819 8 HOH HOH . F 3 HOH B 20 820 36 HOH HOH . F 3 HOH B 21 821 45 HOH HOH . F 3 HOH B 22 822 56 HOH HOH . F 3 HOH B 23 823 40 HOH HOH . F 3 HOH B 24 824 41 HOH HOH . F 3 HOH B 25 825 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 8OU . . . D 2 -4.566 -1.384 -47.735 1 36.05 ? C4 8OU 701 B 1 HETATM 2 C C5 8OU . . . D 2 -3.94 -2.092 -46.684 1 36.27 ? C5 8OU 701 B 1 HETATM 3 C C6 8OU . . . D 2 -2.571 -1.864 -46.455 1 37.25 ? C6 8OU 701 B 1 HETATM 4 N N1 8OU . . . D 2 -1.986 -0.958 -47.28 1 37.41 ? N1 8OU 701 B 1 HETATM 5 N N3 8OU . . . D 2 -3.886 -0.514 -48.511 1 36.38 ? N3 8OU 701 B 1 HETATM 6 C CAL 8OU . . . D 2 -0.45 1.012 -48.771 1 39.76 ? CAL 8OU 701 B 1 HETATM 7 C CAJ 8OU . . . D 2 0.407 0.557 -49.834 1 39.63 ? CAJ 8OU 701 B 1 HETATM 8 C CBA 8OU . . . D 2 -0.154 1.003 -51.199 1 40.86 ? CBA 8OU 701 B 1 HETATM 9 O OAC 8OU . . . D 2 0.644 0.386 -52.204 1 41.21 ? OAC 8OU 701 B 1 HETATM 10 C CAK 8OU . . . D 2 -1.602 0.599 -51.452 1 40.96 ? CAK 8OU 701 B 1 HETATM 11 C CAM 8OU . . . D 2 -2.381 1.201 -50.303 1 40.41 ? CAM 8OU 701 B 1 HETATM 12 N NBB 8OU . . . D 2 -1.858 0.593 -49.054 1 40.36 ? NBB 8OU 701 B 1 HETATM 13 C C2 8OU . . . D 2 -2.576 -0.286 -48.294 1 38.5 ? C2 8OU 701 B 1 HETATM 14 C CAF 8OU . . . D 2 -5.915 -1.582 -48.005 1 35.15 ? CAF 8OU 701 B 1 HETATM 15 C CAD 8OU . . . D 2 -6.642 -2.475 -47.229 1 35.27 ? CAD 8OU 701 B 1 HETATM 16 N NAR 8OU . . . D 2 -6.069 -3.145 -46.23 1 35.31 ? NAR 8OU 701 B 1 HETATM 17 C CAV 8OU . . . D 2 -4.706 -2.985 -45.933 1 36.15 ? CAV 8OU 701 B 1 HETATM 18 O OAB 8OU . . . D 2 -4.21 -3.625 -45.003 1 37.34 ? OAB 8OU 701 B 1 HETATM 19 N NAQ 8OU . . . D 2 -1.895 -2.52 -45.433 1 37.73 ? NAQ 8OU 701 B 1 HETATM 20 C CAS 8OU . . . D 2 -0.537 -2.415 -45.317 1 40.73 ? CAS 8OU 701 B 1 HETATM 21 C CAI 8OU . . . D 2 0.284 -3.092 -44.382 1 43.18 ? CAI 8OU 701 B 1 HETATM 22 C CAW 8OU . . . D 2 1.634 -2.874 -44.4 1 44.16 ? CAW 8OU 701 B 1 HETATM 23 C CAH 8OU . . . D 2 2.667 -3.332 -43.697 1 45.81 ? CAH 8OU 701 B 1 HETATM 24 N NAN 8OU . . . D 2 3.785 -2.76 -44.17 1 46.44 ? NAN 8OU 701 B 1 HETATM 25 N NBC 8OU . . . D 2 3.517 -1.999 -45.099 1 44.9 ? NBC 8OU 701 B 1 HETATM 26 C CAA 8OU . . . D 2 4.481 -1.157 -45.904 1 45.57 ? CAA 8OU 701 B 1 HETATM 27 C CAY 8OU . . . D 2 2.211 -2.034 -45.274 1 44.38 ? CAY 8OU 701 B 1 HETATM 28 C CAG 8OU . . . D 2 1.489 -1.384 -46.146 1 43.27 ? CAG 8OU 701 B 1 HETATM 29 C CAE 8OU . . . D 2 0.149 -1.572 -46.168 1 40.89 ? CAE 8OU 701 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #