data_5Y65 # _model_server_result.job_id fE0q-b419GK107ukRsSGkQ _model_server_result.datetime_utc '2024-11-22 12:33:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5Y65 # _exptl.entry_id 5Y65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y65 _cell.length_a 79.193 _cell.length_b 82.929 _cell.length_c 99.797 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 10 C ARG 10 1_555 B N NEP 11 C NEP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C NEP 11 C NEP 11 1_555 B N GLY 12 C GLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Y65 _atom_sites.fract_transf_matrix[1][1] 0.012627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL B 1 301 301 CL CL . D 4 MES C 1 301 303 MES MES . E 5 HKB C 1 302 1 HKB HKB . F 6 HOH B 1 401 73 HOH HOH . F 6 HOH B 2 402 68 HOH HOH . F 6 HOH B 3 403 11 HOH HOH . F 6 HOH B 4 404 4 HOH HOH . F 6 HOH B 5 405 15 HOH HOH . F 6 HOH B 6 406 1 HOH HOH . F 6 HOH B 7 407 48 HOH HOH . F 6 HOH B 8 408 12 HOH HOH . F 6 HOH B 9 409 27 HOH HOH . F 6 HOH B 10 410 22 HOH HOH . F 6 HOH B 11 411 3 HOH HOH . F 6 HOH B 12 412 10 HOH HOH . F 6 HOH B 13 413 5 HOH HOH . F 6 HOH B 14 414 7 HOH HOH . F 6 HOH B 15 415 41 HOH HOH . F 6 HOH B 16 416 77 HOH HOH . F 6 HOH B 17 417 50 HOH HOH . F 6 HOH B 18 418 32 HOH HOH . F 6 HOH B 19 419 42 HOH HOH . F 6 HOH B 20 420 29 HOH HOH . F 6 HOH B 21 421 66 HOH HOH . F 6 HOH B 22 422 51 HOH HOH . G 6 HOH C 1 401 65 HOH HOH . G 6 HOH C 2 402 79 HOH HOH . G 6 HOH C 3 403 38 HOH HOH . G 6 HOH C 4 404 54 HOH HOH . G 6 HOH C 5 405 16 HOH HOH . G 6 HOH C 6 406 45 HOH HOH . G 6 HOH C 7 407 72 HOH HOH . G 6 HOH C 8 408 26 HOH HOH . G 6 HOH C 9 409 43 HOH HOH . G 6 HOH C 10 410 19 HOH HOH . G 6 HOH C 11 411 2 HOH HOH . G 6 HOH C 12 412 76 HOH HOH . G 6 HOH C 13 413 67 HOH HOH . G 6 HOH C 14 414 13 HOH HOH . G 6 HOH C 15 415 35 HOH HOH . G 6 HOH C 16 416 62 HOH HOH . G 6 HOH C 17 417 9 HOH HOH . G 6 HOH C 18 418 14 HOH HOH . G 6 HOH C 19 419 20 HOH HOH . G 6 HOH C 20 420 55 HOH HOH . G 6 HOH C 21 421 39 HOH HOH . G 6 HOH C 22 422 6 HOH HOH . G 6 HOH C 23 423 31 HOH HOH . G 6 HOH C 24 424 34 HOH HOH . G 6 HOH C 25 425 8 HOH HOH . G 6 HOH C 26 426 44 HOH HOH . G 6 HOH C 27 427 47 HOH HOH . G 6 HOH C 28 428 49 HOH HOH . G 6 HOH C 29 429 75 HOH HOH . G 6 HOH C 30 430 56 HOH HOH . G 6 HOH C 31 431 64 HOH HOH . G 6 HOH C 32 432 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . D 4 -17.81 -9.078 -26.566 1 54.97 ? O1 MES 301 C 1 HETATM 2 C C2 MES . . . D 4 -16.816 -9.705 -27.368 1 49.22 ? C2 MES 301 C 1 HETATM 3 C C3 MES . . . D 4 -15.728 -10.275 -26.465 1 45.26 ? C3 MES 301 C 1 HETATM 4 N N4 MES . . . D 4 -15.226 -9.144 -25.703 1 48.08 ? N4 MES 301 C 1 HETATM 5 C C5 MES . . . D 4 -16.19 -8.47 -24.836 1 51.07 ? C5 MES 301 C 1 HETATM 6 C C6 MES . . . D 4 -17.308 -8.001 -25.764 1 55.96 ? C6 MES 301 C 1 HETATM 7 C C7 MES . . . D 4 -13.865 -9.284 -25.205 1 43.64 ? C7 MES 301 C 1 HETATM 8 C C8 MES . . . D 4 -13.988 -9.779 -23.761 1 39.08 ? C8 MES 301 C 1 HETATM 9 S S MES . . . D 4 -12.583 -10.586 -23.368 1 30.28 ? S MES 301 C 1 HETATM 10 O O1S MES . . . D 4 -11.406 -9.712 -23.668 1 28.99 ? O1S MES 301 C 1 HETATM 11 O O2S MES . . . D 4 -12.533 -11.823 -24.199 1 25.71 ? O2S MES 301 C 1 HETATM 12 O O3S MES . . . D 4 -12.569 -10.941 -21.927 1 27.02 ? O3S MES 301 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #