data_5Y65 # _model_server_result.job_id dDfAlSl16UD22vA4EAltHg _model_server_result.datetime_utc '2024-11-22 12:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 5Y65 # _exptl.entry_id 5Y65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.453 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[3,4-bis(oxidanyl)-9,10-bis(oxidanylidene)anthracen-2-yl]-4-(dimethylamino)benzenesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y65 _cell.length_a 79.193 _cell.length_b 82.929 _cell.length_c 99.797 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 10 C ARG 10 1_555 B N NEP 11 C NEP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C NEP 11 C NEP 11 1_555 B N GLY 12 C GLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C22 H18 N2 O6 S' _chem_comp.formula_weight 438.453 _chem_comp.id HKB _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[3,4-bis(oxidanyl)-9,10-bis(oxidanylidene)anthracen-2-yl]-4-(dimethylamino)benzenesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Y65 _atom_sites.fract_transf_matrix[1][1] 0.012627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL B 1 301 301 CL CL . D 4 MES C 1 301 303 MES MES . E 5 HKB C 1 302 1 HKB HKB . F 6 HOH B 1 401 73 HOH HOH . F 6 HOH B 2 402 68 HOH HOH . F 6 HOH B 3 403 11 HOH HOH . F 6 HOH B 4 404 4 HOH HOH . F 6 HOH B 5 405 15 HOH HOH . F 6 HOH B 6 406 1 HOH HOH . F 6 HOH B 7 407 48 HOH HOH . F 6 HOH B 8 408 12 HOH HOH . F 6 HOH B 9 409 27 HOH HOH . F 6 HOH B 10 410 22 HOH HOH . F 6 HOH B 11 411 3 HOH HOH . F 6 HOH B 12 412 10 HOH HOH . F 6 HOH B 13 413 5 HOH HOH . F 6 HOH B 14 414 7 HOH HOH . F 6 HOH B 15 415 41 HOH HOH . F 6 HOH B 16 416 77 HOH HOH . F 6 HOH B 17 417 50 HOH HOH . F 6 HOH B 18 418 32 HOH HOH . F 6 HOH B 19 419 42 HOH HOH . F 6 HOH B 20 420 29 HOH HOH . F 6 HOH B 21 421 66 HOH HOH . F 6 HOH B 22 422 51 HOH HOH . G 6 HOH C 1 401 65 HOH HOH . G 6 HOH C 2 402 79 HOH HOH . G 6 HOH C 3 403 38 HOH HOH . G 6 HOH C 4 404 54 HOH HOH . G 6 HOH C 5 405 16 HOH HOH . G 6 HOH C 6 406 45 HOH HOH . G 6 HOH C 7 407 72 HOH HOH . G 6 HOH C 8 408 26 HOH HOH . G 6 HOH C 9 409 43 HOH HOH . G 6 HOH C 10 410 19 HOH HOH . G 6 HOH C 11 411 2 HOH HOH . G 6 HOH C 12 412 76 HOH HOH . G 6 HOH C 13 413 67 HOH HOH . G 6 HOH C 14 414 13 HOH HOH . G 6 HOH C 15 415 35 HOH HOH . G 6 HOH C 16 416 62 HOH HOH . G 6 HOH C 17 417 9 HOH HOH . G 6 HOH C 18 418 14 HOH HOH . G 6 HOH C 19 419 20 HOH HOH . G 6 HOH C 20 420 55 HOH HOH . G 6 HOH C 21 421 39 HOH HOH . G 6 HOH C 22 422 6 HOH HOH . G 6 HOH C 23 423 31 HOH HOH . G 6 HOH C 24 424 34 HOH HOH . G 6 HOH C 25 425 8 HOH HOH . G 6 HOH C 26 426 44 HOH HOH . G 6 HOH C 27 427 47 HOH HOH . G 6 HOH C 28 428 49 HOH HOH . G 6 HOH C 29 429 75 HOH HOH . G 6 HOH C 30 430 56 HOH HOH . G 6 HOH C 31 431 64 HOH HOH . G 6 HOH C 32 432 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HKB . . . E 5 -22.058 -13.034 -23.091 1 40.48 ? C01 HKB 302 C 1 HETATM 2 C C02 HKB . . . E 5 -21.971 -14.186 -23.878 1 42.12 ? C02 HKB 302 C 1 HETATM 3 C C03 HKB . . . E 5 -21.662 -14.09 -25.268 1 41.17 ? C03 HKB 302 C 1 HETATM 4 C C04 HKB . . . E 5 -21.431 -12.795 -25.856 1 45.79 ? C04 HKB 302 C 1 HETATM 5 C C05 HKB . . . E 5 -21.51 -11.642 -25.086 1 51 ? C05 HKB 302 C 1 HETATM 6 C C06 HKB . . . E 5 -21.832 -11.755 -23.677 1 42.38 ? C06 HKB 302 C 1 HETATM 7 C C07 HKB . . . E 5 -21.113 -12.7 -27.276 1 47.67 ? C07 HKB 302 C 1 HETATM 8 C C08 HKB . . . E 5 -20.867 -11.401 -27.894 1 54.62 ? C08 HKB 302 C 1 HETATM 9 C C09 HKB . . . E 5 -20.938 -10.252 -27.157 1 55.32 ? C09 HKB 302 C 1 HETATM 10 C C10 HKB . . . E 5 -21.267 -10.338 -25.691 1 54.99 ? C10 HKB 302 C 1 HETATM 11 O O01 HKB . . . E 5 -21.332 -9.325 -25.017 1 51.3 ? O01 HKB 302 C 1 HETATM 12 O O02 HKB . . . E 5 -21.048 -13.708 -27.947 1 53.4 ? O02 HKB 302 C 1 HETATM 13 C C11 HKB . . . E 5 -20.55 -11.352 -29.302 1 57.88 ? C11 HKB 302 C 1 HETATM 14 C C12 HKB . . . E 5 -20.313 -10.116 -29.927 1 60.72 ? C12 HKB 302 C 1 HETATM 15 C C13 HKB . . . E 5 -20.384 -8.907 -29.166 1 55.5 ? C13 HKB 302 C 1 HETATM 16 C C14 HKB . . . E 5 -20.69 -8.959 -27.808 1 52.21 ? C14 HKB 302 C 1 HETATM 17 O O03 HKB . . . E 5 -20.75 -7.747 -27.061 1 53.2 ? O03 HKB 302 C 1 HETATM 18 O O04 HKB . . . E 5 -20.151 -7.622 -29.756 1 58.84 ? O04 HKB 302 C 1 HETATM 19 N N01 HKB . . . E 5 -19.994 -10.136 -31.331 1 67.93 ? N01 HKB 302 C 1 HETATM 20 S S HKB . . . E 5 -19.013 -11.391 -31.981 1 80.53 ? S HKB 302 C 1 HETATM 21 O O05 HKB . . . E 5 -18.649 -11.084 -33.354 1 77.39 ? O05 HKB 302 C 1 HETATM 22 O O HKB . . . E 5 -19.762 -12.641 -32.148 1 70.88 ? O HKB 302 C 1 HETATM 23 C C15 HKB . . . E 5 -17.533 -11.657 -30.959 1 62 ? C15 HKB 302 C 1 HETATM 24 C C16 HKB . . . E 5 -17.451 -12.718 -30.034 1 56.2 ? C16 HKB 302 C 1 HETATM 25 C C17 HKB . . . E 5 -16.309 -12.895 -29.262 1 48.82 ? C17 HKB 302 C 1 HETATM 26 C C18 HKB . . . E 5 -15.21 -11.978 -29.421 1 53.33 ? C18 HKB 302 C 1 HETATM 27 C C19 HKB . . . E 5 -15.292 -10.935 -30.324 1 52.61 ? C19 HKB 302 C 1 HETATM 28 C C20 HKB . . . E 5 -16.441 -10.768 -31.098 1 57.63 ? C20 HKB 302 C 1 HETATM 29 N N HKB . . . E 5 -14.008 -12.106 -28.619 1 45.82 ? N HKB 302 C 1 HETATM 30 C C21 HKB . . . E 5 -13.922 -13.18 -27.705 1 38.96 ? C21 HKB 302 C 1 HETATM 31 C C HKB . . . E 5 -12.917 -11.076 -28.723 1 38.85 ? C HKB 302 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #