data_5Y66 # _model_server_result.job_id tnwHecHuKY8Sg4X6phbDpQ _model_server_result.datetime_utc '2025-07-24 21:57:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5Y66 # _exptl.entry_id 5Y66 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y66 _cell.length_a 46.37 _cell.length_b 86.242 _cell.length_c 121.186 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y66 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 128 n n PA O2A FAD sing 129 n n PA O5B FAD sing 130 n n PA O3P FAD sing 131 n n O2A HOA2 FAD sing 132 n n O5B C5B FAD sing 133 n n C5B C4B FAD sing 134 n n C5B H51A FAD sing 135 n n C5B H52A FAD sing 136 n n C4B O4B FAD sing 137 n n C4B C3B FAD sing 138 n n C4B H4B FAD sing 139 n n O4B C1B FAD sing 140 n n C3B O3B FAD sing 141 n n C3B C2B FAD sing 142 n n C3B H3B FAD sing 143 n n O3B HO3A FAD sing 144 n n C2B O2B FAD sing 145 n n C2B C1B FAD sing 146 n n C2B H2B FAD sing 147 n n O2B HO2A FAD sing 148 n n C1B N9A FAD sing 149 n n C1B H1B FAD sing 150 n n N9A C8A FAD sing 151 n y N9A C4A FAD sing 152 n y C8A N7A FAD doub 153 n y C8A H8A FAD sing 154 n n N7A C5A FAD sing 155 n y C5A C6A FAD sing 156 n y C5A C4A FAD doub 157 n y C6A N6A FAD sing 158 n n C6A N1A FAD doub 159 n y N6A H61A FAD sing 160 n n N6A H62A FAD sing 161 n n N1A C2A FAD sing 162 n y C2A N3A FAD doub 163 n y C2A H2A FAD sing 164 n n N3A C4A FAD sing 165 n y N1 C2 FAD sing 166 n n N1 C10 FAD doub 167 n n C2 O2 FAD doub 168 n n C2 N3 FAD sing 169 n n N3 C4 FAD sing 170 n n N3 HN3 FAD sing 171 n n C4 O4 FAD doub 172 n n C4 C4X FAD sing 173 n n C4X N5 FAD doub 174 n n C4X C10 FAD sing 175 n n N5 C5X FAD sing 176 n n C5X C6 FAD doub 177 n y C5X C9A FAD sing 178 n y C6 C7 FAD sing 179 n y C6 H6 FAD sing 180 n n C7 C7M FAD sing 181 n n C7 C8 FAD doub 182 n y C7M HM71 FAD sing 183 n n C7M HM72 FAD sing 184 n n C7M HM73 FAD sing 185 n n C8 C8M FAD sing 186 n n C8 C9 FAD sing 187 n y C8M HM81 FAD sing 188 n n C8M HM82 FAD sing 189 n n C8M HM83 FAD sing 190 n n C9 C9A FAD doub 191 n y C9 H9 FAD sing 192 n n C9A N10 FAD sing 193 n n N10 C10 FAD sing 194 n n N10 C1' FAD sing 195 n n C1' C2' FAD sing 196 n n C1' "H1'1" FAD sing 197 n n C1' "H1'2" FAD sing 198 n n C2' O2' FAD sing 199 n n C2' C3' FAD sing 200 n n C2' H2' FAD sing 201 n n O2' HO2' FAD sing 202 n n C3' O3' FAD sing 203 n n C3' C4' FAD sing 204 n n C3' H3' FAD sing 205 n n O3' HO3' FAD sing 206 n n C4' O4' FAD sing 207 n n C4' C5' FAD sing 208 n n C4' H4' FAD sing 209 n n O4' HO4' FAD sing 210 n n C5' O5' FAD sing 211 n n C5' "H5'1" FAD sing 212 n n C5' "H5'2" FAD sing 213 n n O5' P FAD sing 214 n n P O1P FAD doub 215 n n P O2P FAD sing 216 n n P O3P FAD sing 217 n n O2P HOP2 FAD sing 218 n n # _atom_sites.entry_id 5Y66 _atom_sites.fract_transf_matrix[1][1] 0.021566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 401 FAD FAD . C 3 7ZR A 1 502 1 7ZR T7 . D 4 KYN A 1 503 1 KYN KYN . E 5 HOH A 1 601 101 HOH HOH . E 5 HOH A 2 602 92 HOH HOH . E 5 HOH A 3 603 55 HOH HOH . E 5 HOH A 4 604 88 HOH HOH . E 5 HOH A 5 605 89 HOH HOH . E 5 HOH A 6 606 93 HOH HOH . E 5 HOH A 7 607 62 HOH HOH . E 5 HOH A 8 608 98 HOH HOH . E 5 HOH A 9 609 21 HOH HOH . E 5 HOH A 10 610 80 HOH HOH . E 5 HOH A 11 611 73 HOH HOH . E 5 HOH A 12 612 66 HOH HOH . E 5 HOH A 13 613 37 HOH HOH . E 5 HOH A 14 614 82 HOH HOH . E 5 HOH A 15 615 9 HOH HOH . E 5 HOH A 16 616 44 HOH HOH . E 5 HOH A 17 617 84 HOH HOH . E 5 HOH A 18 618 49 HOH HOH . E 5 HOH A 19 619 102 HOH HOH . E 5 HOH A 20 620 69 HOH HOH . E 5 HOH A 21 621 4 HOH HOH . E 5 HOH A 22 622 75 HOH HOH . E 5 HOH A 23 623 3 HOH HOH . E 5 HOH A 24 624 90 HOH HOH . E 5 HOH A 25 625 25 HOH HOH . E 5 HOH A 26 626 43 HOH HOH . E 5 HOH A 27 627 50 HOH HOH . E 5 HOH A 28 628 52 HOH HOH . E 5 HOH A 29 629 39 HOH HOH . E 5 HOH A 30 630 60 HOH HOH . E 5 HOH A 31 631 23 HOH HOH . E 5 HOH A 32 632 18 HOH HOH . E 5 HOH A 33 633 24 HOH HOH . E 5 HOH A 34 634 6 HOH HOH . E 5 HOH A 35 635 29 HOH HOH . E 5 HOH A 36 636 15 HOH HOH . E 5 HOH A 37 637 106 HOH HOH . E 5 HOH A 38 638 14 HOH HOH . E 5 HOH A 39 639 104 HOH HOH . E 5 HOH A 40 640 8 HOH HOH . E 5 HOH A 41 641 11 HOH HOH . E 5 HOH A 42 642 48 HOH HOH . E 5 HOH A 43 643 34 HOH HOH . E 5 HOH A 44 644 53 HOH HOH . E 5 HOH A 45 645 22 HOH HOH . E 5 HOH A 46 646 2 HOH HOH . E 5 HOH A 47 647 54 HOH HOH . E 5 HOH A 48 648 7 HOH HOH . E 5 HOH A 49 649 32 HOH HOH . E 5 HOH A 50 650 40 HOH HOH . E 5 HOH A 51 651 76 HOH HOH . E 5 HOH A 52 652 71 HOH HOH . E 5 HOH A 53 653 28 HOH HOH . E 5 HOH A 54 654 105 HOH HOH . E 5 HOH A 55 655 97 HOH HOH . E 5 HOH A 56 656 5 HOH HOH . E 5 HOH A 57 657 65 HOH HOH . E 5 HOH A 58 658 78 HOH HOH . E 5 HOH A 59 659 13 HOH HOH . E 5 HOH A 60 660 87 HOH HOH . E 5 HOH A 61 661 26 HOH HOH . E 5 HOH A 62 662 38 HOH HOH . E 5 HOH A 63 663 12 HOH HOH . E 5 HOH A 64 664 35 HOH HOH . E 5 HOH A 65 665 10 HOH HOH . E 5 HOH A 66 666 42 HOH HOH . E 5 HOH A 67 667 67 HOH HOH . E 5 HOH A 68 668 107 HOH HOH . E 5 HOH A 69 669 103 HOH HOH . E 5 HOH A 70 670 86 HOH HOH . E 5 HOH A 71 671 100 HOH HOH . E 5 HOH A 72 672 63 HOH HOH . E 5 HOH A 73 673 33 HOH HOH . E 5 HOH A 74 674 20 HOH HOH . E 5 HOH A 75 675 30 HOH HOH . E 5 HOH A 76 676 47 HOH HOH . E 5 HOH A 77 677 36 HOH HOH . E 5 HOH A 78 678 77 HOH HOH . E 5 HOH A 79 679 27 HOH HOH . E 5 HOH A 80 680 46 HOH HOH . E 5 HOH A 81 681 72 HOH HOH . E 5 HOH A 82 682 19 HOH HOH . E 5 HOH A 83 683 1 HOH HOH . E 5 HOH A 84 684 17 HOH HOH . E 5 HOH A 85 685 81 HOH HOH . E 5 HOH A 86 686 91 HOH HOH . E 5 HOH A 87 687 41 HOH HOH . E 5 HOH A 88 688 83 HOH HOH . E 5 HOH A 89 689 99 HOH HOH . E 5 HOH A 90 690 31 HOH HOH . E 5 HOH A 91 691 79 HOH HOH . E 5 HOH A 92 692 16 HOH HOH . E 5 HOH A 93 693 85 HOH HOH . E 5 HOH A 94 694 108 HOH HOH . E 5 HOH A 95 695 45 HOH HOH . E 5 HOH A 96 696 94 HOH HOH . E 5 HOH A 97 697 70 HOH HOH . E 5 HOH A 98 698 56 HOH HOH . E 5 HOH A 99 699 51 HOH HOH . E 5 HOH A 100 700 59 HOH HOH . E 5 HOH A 101 701 58 HOH HOH . E 5 HOH A 102 702 68 HOH HOH . E 5 HOH A 103 703 57 HOH HOH . E 5 HOH A 104 704 95 HOH HOH . E 5 HOH A 105 705 96 HOH HOH . E 5 HOH A 106 706 74 HOH HOH . E 5 HOH A 107 707 64 HOH HOH . E 5 HOH A 108 708 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 1.678 80.741 126.928 1 23.24 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . B 2 2.944 80.054 126.574 1 18.7 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . B 2 0.744 80.94 125.618 1 33.05 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . B 2 0.906 79.976 128.071 1 25.87 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . B 2 -0.328 80.163 128.741 1 24.79 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . B 2 -0.676 78.707 129.093 1 33.08 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . B 2 -2.025 79.362 129.012 1 38.02 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . B 2 -1.171 77.482 128.294 1 30.21 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . B 2 -1.147 76.346 129.119 1 34.74 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . B 2 -2.484 78.113 127.828 1 31.94 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . B 2 -3.355 77.067 127.351 1 32.11 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . B 2 -3.022 78.385 129.224 1 23.66 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . B 2 -4.365 79.055 129.163 1 28.47 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . B 2 -4.762 79.973 128.267 1 30.76 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . B 2 -5.997 80.386 128.59 1 26.9 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . B 2 -6.37 79.75 129.71 1 26.04 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . B 2 -7.493 79.784 130.46 1 29.33 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . B 2 -8.488 80.589 130.09 1 24.73 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . B 2 -7.644 79.037 131.559 1 35.67 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . B 2 -6.606 78.194 131.937 1 34 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . B 2 -5.458 78.175 131.147 1 23.35 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . B 2 -5.365 78.931 130.05 1 23.93 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . B 2 9.242 83.603 122.071 1 14.37 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . B 2 10.628 83.381 122.206 1 19.57 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . B 2 11.226 83.568 123.263 1 21.97 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . B 2 11.365 82.923 121.123 1 20.54 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . B 2 10.731 82.693 119.916 1 13.43 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . B 2 11.422 82.302 118.992 1 17.71 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . B 2 9.37 82.923 119.759 1 11.24 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . B 2 8.761 82.693 118.519 1 15.15 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . B 2 7.373 82.909 118.391 1 13.19 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . B 2 6.74 82.709 117.175 1 13.2 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . B 2 5.374 82.925 117.03 1 19.99 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . B 2 4.777 82.694 115.786 1 25.23 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . B 2 4.626 83.369 118.11 1 23.82 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . B 2 3.247 83.587 117.957 1 16.35 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . B 2 5.262 83.593 119.337 1 29.29 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . B 2 6.637 83.362 119.486 1 24.22 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . B 2 7.252 83.569 120.68 1 17.52 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . B 2 8.593 83.372 120.835 1 17.19 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . B 2 6.408 84.068 121.785 1 20.95 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . B 2 6.321 83.06 122.896 1 19.39 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . B 2 5.757 81.9 122.318 1 16.68 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . B 2 5.424 83.63 123.997 1 14.79 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . B 2 5.797 84.944 124.396 1 12.92 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . B 2 5.363 82.677 125.204 1 24.65 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . B 2 4.705 81.467 124.821 1 14.51 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . B 2 4.539 83.321 126.337 1 22.75 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . B 2 4.504 82.353 127.361 1 12.7 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . B 2 3.342 82.451 128.49 1 21.99 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . B 2 3.548 81.421 129.536 1 26.97 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . B 2 3.304 83.986 129.067 1 24.91 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . B 2 2.058 82.183 127.577 1 20.73 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #