data_5Y66 # _model_server_result.job_id nPfGUpPFqdl5vIzewEw9bQ _model_server_result.datetime_utc '2024-11-01 19:31:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5Y66 # _exptl.entry_id 5Y66 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.214 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y66 _cell.length_a 46.37 _cell.length_b 86.242 _cell.length_c 121.186 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y66 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N2 O3' _chem_comp.formula_weight 208.214 _chem_comp.id KYN _chem_comp.mon_nstd_flag n _chem_comp.name '(2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms L-KYNURENINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C KYN sing 309 n n O C KYN doub 310 n n C OXT KYN sing 311 n n N CA KYN sing 312 n n N H KYN sing 313 n n N H2 KYN sing 314 n n OXT HXT KYN sing 315 n n CD2 C1 KYN sing 316 n n O2 C1 KYN doub 317 n n C1 CB KYN sing 318 n n CG N1 KYN sing 319 n n N1 HN1 KYN sing 320 n n N1 HN1A KYN sing 321 n n CB CA KYN sing 322 n n CA HA KYN sing 323 n n CB HB KYN sing 324 n n CB HBA KYN sing 325 n n CD1 CG KYN doub 326 n y CD2 CG KYN sing 327 n y CZ CE1 KYN doub 328 n y CZ CE2 KYN sing 329 n y CZ HZ KYN sing 330 n n CE1 CD1 KYN sing 331 n y CD1 HD1 KYN sing 332 n n CE2 CD2 KYN doub 333 n y CE1 HE1 KYN sing 334 n n CE2 HE2 KYN sing 335 n n # _atom_sites.entry_id 5Y66 _atom_sites.fract_transf_matrix[1][1] 0.021566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 401 FAD FAD . C 3 7ZR A 1 502 1 7ZR T7 . D 4 KYN A 1 503 1 KYN KYN . E 5 HOH A 1 601 101 HOH HOH . E 5 HOH A 2 602 92 HOH HOH . E 5 HOH A 3 603 55 HOH HOH . E 5 HOH A 4 604 88 HOH HOH . E 5 HOH A 5 605 89 HOH HOH . E 5 HOH A 6 606 93 HOH HOH . E 5 HOH A 7 607 62 HOH HOH . E 5 HOH A 8 608 98 HOH HOH . E 5 HOH A 9 609 21 HOH HOH . E 5 HOH A 10 610 80 HOH HOH . E 5 HOH A 11 611 73 HOH HOH . E 5 HOH A 12 612 66 HOH HOH . E 5 HOH A 13 613 37 HOH HOH . E 5 HOH A 14 614 82 HOH HOH . E 5 HOH A 15 615 9 HOH HOH . E 5 HOH A 16 616 44 HOH HOH . E 5 HOH A 17 617 84 HOH HOH . E 5 HOH A 18 618 49 HOH HOH . E 5 HOH A 19 619 102 HOH HOH . E 5 HOH A 20 620 69 HOH HOH . E 5 HOH A 21 621 4 HOH HOH . E 5 HOH A 22 622 75 HOH HOH . E 5 HOH A 23 623 3 HOH HOH . E 5 HOH A 24 624 90 HOH HOH . E 5 HOH A 25 625 25 HOH HOH . E 5 HOH A 26 626 43 HOH HOH . E 5 HOH A 27 627 50 HOH HOH . E 5 HOH A 28 628 52 HOH HOH . E 5 HOH A 29 629 39 HOH HOH . E 5 HOH A 30 630 60 HOH HOH . E 5 HOH A 31 631 23 HOH HOH . E 5 HOH A 32 632 18 HOH HOH . E 5 HOH A 33 633 24 HOH HOH . E 5 HOH A 34 634 6 HOH HOH . E 5 HOH A 35 635 29 HOH HOH . E 5 HOH A 36 636 15 HOH HOH . E 5 HOH A 37 637 106 HOH HOH . E 5 HOH A 38 638 14 HOH HOH . E 5 HOH A 39 639 104 HOH HOH . E 5 HOH A 40 640 8 HOH HOH . E 5 HOH A 41 641 11 HOH HOH . E 5 HOH A 42 642 48 HOH HOH . E 5 HOH A 43 643 34 HOH HOH . E 5 HOH A 44 644 53 HOH HOH . E 5 HOH A 45 645 22 HOH HOH . E 5 HOH A 46 646 2 HOH HOH . E 5 HOH A 47 647 54 HOH HOH . E 5 HOH A 48 648 7 HOH HOH . E 5 HOH A 49 649 32 HOH HOH . E 5 HOH A 50 650 40 HOH HOH . E 5 HOH A 51 651 76 HOH HOH . E 5 HOH A 52 652 71 HOH HOH . E 5 HOH A 53 653 28 HOH HOH . E 5 HOH A 54 654 105 HOH HOH . E 5 HOH A 55 655 97 HOH HOH . E 5 HOH A 56 656 5 HOH HOH . E 5 HOH A 57 657 65 HOH HOH . E 5 HOH A 58 658 78 HOH HOH . E 5 HOH A 59 659 13 HOH HOH . E 5 HOH A 60 660 87 HOH HOH . E 5 HOH A 61 661 26 HOH HOH . E 5 HOH A 62 662 38 HOH HOH . E 5 HOH A 63 663 12 HOH HOH . E 5 HOH A 64 664 35 HOH HOH . E 5 HOH A 65 665 10 HOH HOH . E 5 HOH A 66 666 42 HOH HOH . E 5 HOH A 67 667 67 HOH HOH . E 5 HOH A 68 668 107 HOH HOH . E 5 HOH A 69 669 103 HOH HOH . E 5 HOH A 70 670 86 HOH HOH . E 5 HOH A 71 671 100 HOH HOH . E 5 HOH A 72 672 63 HOH HOH . E 5 HOH A 73 673 33 HOH HOH . E 5 HOH A 74 674 20 HOH HOH . E 5 HOH A 75 675 30 HOH HOH . E 5 HOH A 76 676 47 HOH HOH . E 5 HOH A 77 677 36 HOH HOH . E 5 HOH A 78 678 77 HOH HOH . E 5 HOH A 79 679 27 HOH HOH . E 5 HOH A 80 680 46 HOH HOH . E 5 HOH A 81 681 72 HOH HOH . E 5 HOH A 82 682 19 HOH HOH . E 5 HOH A 83 683 1 HOH HOH . E 5 HOH A 84 684 17 HOH HOH . E 5 HOH A 85 685 81 HOH HOH . E 5 HOH A 86 686 91 HOH HOH . E 5 HOH A 87 687 41 HOH HOH . E 5 HOH A 88 688 83 HOH HOH . E 5 HOH A 89 689 99 HOH HOH . E 5 HOH A 90 690 31 HOH HOH . E 5 HOH A 91 691 79 HOH HOH . E 5 HOH A 92 692 16 HOH HOH . E 5 HOH A 93 693 85 HOH HOH . E 5 HOH A 94 694 108 HOH HOH . E 5 HOH A 95 695 45 HOH HOH . E 5 HOH A 96 696 94 HOH HOH . E 5 HOH A 97 697 70 HOH HOH . E 5 HOH A 98 698 56 HOH HOH . E 5 HOH A 99 699 51 HOH HOH . E 5 HOH A 100 700 59 HOH HOH . E 5 HOH A 101 701 58 HOH HOH . E 5 HOH A 102 702 68 HOH HOH . E 5 HOH A 103 703 57 HOH HOH . E 5 HOH A 104 704 95 HOH HOH . E 5 HOH A 105 705 96 HOH HOH . E 5 HOH A 106 706 74 HOH HOH . E 5 HOH A 107 707 64 HOH HOH . E 5 HOH A 108 708 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C KYN . . . D 4 16.245 87.794 114.993 1 75.31 ? C KYN 503 A 1 HETATM 2 N N KYN . . . D 4 16.819 86.885 117.168 1 60.27 ? N KYN 503 A 1 HETATM 3 O OXT KYN . . . D 4 16.992 88.776 115.242 1 75.08 -1 OXT KYN 503 A 1 HETATM 4 C C1 KYN . . . D 4 13.921 85.251 115.887 1 51.3 ? C1 KYN 503 A 1 HETATM 5 N N1 KYN . . . D 4 12.126 83.176 116.496 1 40.29 ? N1 KYN 503 A 1 HETATM 6 O O2 KYN . . . D 4 14.463 84.171 115.981 1 51.15 ? O2 KYN 503 A 1 HETATM 7 C CA KYN . . . D 4 16.072 86.647 115.979 1 59.5 ? CA KYN 503 A 1 HETATM 8 C CB KYN . . . D 4 14.628 86.507 116.391 1 54.91 ? CB KYN 503 A 1 HETATM 9 C CG KYN . . . D 4 11.646 84.224 115.673 1 44.57 ? CG KYN 503 A 1 HETATM 10 C CZ KYN . . . D 4 10.709 86.269 114.057 1 44 ? CZ KYN 503 A 1 HETATM 11 C CD1 KYN . . . D 4 10.333 84.195 115.2 1 42.74 ? CD1 KYN 503 A 1 HETATM 12 C CD2 KYN . . . D 4 12.5 85.272 115.344 1 45.61 ? CD2 KYN 503 A 1 HETATM 13 C CE1 KYN . . . D 4 9.864 85.218 114.39 1 36.3 ? CE1 KYN 503 A 1 HETATM 14 C CE2 KYN . . . D 4 12.025 86.301 114.537 1 49.99 ? CE2 KYN 503 A 1 HETATM 15 O O KYN . . . D 4 15.642 87.773 113.886 1 81.94 ? O KYN 503 A 1 HETATM 16 H H2 KYN . . . D 4 16.924 87.788 117.287 1 72.33 ? H2 KYN 503 A 1 HETATM 17 H H KYN . . . D 4 17.641 86.489 117.097 1 72.33 ? H KYN 503 A 1 HETATM 18 H HN1 KYN . . . D 4 13.025 83.043 116.588 1 48.35 ? HN1 KYN 503 A 1 HETATM 19 H HN1A KYN . . . D 4 11.536 82.632 116.934 1 48.35 ? HN1A KYN 503 A 1 HETATM 20 H HA KYN . . . D 4 16.374 85.814 115.566 1 71.4 ? HA KYN 503 A 1 HETATM 21 H HB KYN . . . D 4 14.596 86.499 117.368 1 65.89 ? HB KYN 503 A 1 HETATM 22 H HBA KYN . . . D 4 14.134 87.29 116.074 1 65.89 ? HBA KYN 503 A 1 HETATM 23 H HZ KYN . . . D 4 10.382 86.993 113.491 1 52.8 ? HZ KYN 503 A 1 HETATM 24 H HD1 KYN . . . D 4 9.746 83.452 115.437 1 51.29 ? HD1 KYN 503 A 1 HETATM 25 H HE1 KYN . . . D 4 8.946 85.201 114.059 1 43.56 ? HE1 KYN 503 A 1 HETATM 26 H HE2 KYN . . . D 4 12.614 87.042 114.295 1 59.99 ? HE2 KYN 503 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #