data_5Y6M # _model_server_result.job_id 3gYxCa0npPxum8OmCojeCA _model_server_result.datetime_utc '2024-11-26 22:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5Y6M # _exptl.entry_id 5Y6M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.14 _cell.angle_gamma 90 _cell.entry_id 5Y6M _cell.length_a 53.638 _cell.length_b 69.152 _cell.length_c 57.819 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 22 A THR 201 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc2 B MN MN . A MN 701 1_555 C O3B ADP . A ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc3 B MN MN . A MN 701 1_555 D F2 AF3 . A AF3 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 B MN MN . A MN 701 1_555 E O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc5 B MN MN . A MN 701 1_555 E O HOH . A HOH 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc6 B MN MN . A MN 701 1_555 E O HOH . A HOH 877 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Y6M _atom_sites.fract_transf_matrix[1][1] 0.018643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001349 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 701 1 MN MN . C 3 ADP A 1 702 1 ADP ADP . D 4 AF3 A 1 703 1 AF3 AF3 . E 5 HOH A 1 801 157 HOH HOH . E 5 HOH A 2 802 92 HOH HOH . E 5 HOH A 3 803 38 HOH HOH . E 5 HOH A 4 804 81 HOH HOH . E 5 HOH A 5 805 230 HOH HOH . E 5 HOH A 6 806 167 HOH HOH . E 5 HOH A 7 807 149 HOH HOH . E 5 HOH A 8 808 228 HOH HOH . E 5 HOH A 9 809 221 HOH HOH . E 5 HOH A 10 810 153 HOH HOH . E 5 HOH A 11 811 144 HOH HOH . E 5 HOH A 12 812 158 HOH HOH . E 5 HOH A 13 813 192 HOH HOH . E 5 HOH A 14 814 64 HOH HOH . E 5 HOH A 15 815 274 HOH HOH . E 5 HOH A 16 816 243 HOH HOH . E 5 HOH A 17 817 29 HOH HOH . E 5 HOH A 18 818 241 HOH HOH . E 5 HOH A 19 819 114 HOH HOH . E 5 HOH A 20 820 40 HOH HOH . E 5 HOH A 21 821 61 HOH HOH . E 5 HOH A 22 822 298 HOH HOH . E 5 HOH A 23 823 233 HOH HOH . E 5 HOH A 24 824 284 HOH HOH . E 5 HOH A 25 825 160 HOH HOH . E 5 HOH A 26 826 67 HOH HOH . E 5 HOH A 27 827 206 HOH HOH . E 5 HOH A 28 828 161 HOH HOH . E 5 HOH A 29 829 258 HOH HOH . E 5 HOH A 30 830 138 HOH HOH . E 5 HOH A 31 831 63 HOH HOH . E 5 HOH A 32 832 262 HOH HOH . E 5 HOH A 33 833 255 HOH HOH . E 5 HOH A 34 834 222 HOH HOH . E 5 HOH A 35 835 71 HOH HOH . E 5 HOH A 36 836 2 HOH HOH . E 5 HOH A 37 837 132 HOH HOH . E 5 HOH A 38 838 295 HOH HOH . E 5 HOH A 39 839 248 HOH HOH . E 5 HOH A 40 840 59 HOH HOH . E 5 HOH A 41 841 154 HOH HOH . E 5 HOH A 42 842 42 HOH HOH . E 5 HOH A 43 843 250 HOH HOH . E 5 HOH A 44 844 198 HOH HOH . E 5 HOH A 45 845 5 HOH HOH . E 5 HOH A 46 846 275 HOH HOH . E 5 HOH A 47 847 41 HOH HOH . E 5 HOH A 48 848 268 HOH HOH . E 5 HOH A 49 849 89 HOH HOH . E 5 HOH A 50 850 17 HOH HOH . E 5 HOH A 51 851 178 HOH HOH . E 5 HOH A 52 852 121 HOH HOH . E 5 HOH A 53 853 254 HOH HOH . E 5 HOH A 54 854 238 HOH HOH . E 5 HOH A 55 855 79 HOH HOH . E 5 HOH A 56 856 24 HOH HOH . E 5 HOH A 57 857 36 HOH HOH . E 5 HOH A 58 858 22 HOH HOH . E 5 HOH A 59 859 214 HOH HOH . E 5 HOH A 60 860 13 HOH HOH . E 5 HOH A 61 861 60 HOH HOH . E 5 HOH A 62 862 140 HOH HOH . E 5 HOH A 63 863 128 HOH HOH . E 5 HOH A 64 864 267 HOH HOH . E 5 HOH A 65 865 20 HOH HOH . E 5 HOH A 66 866 188 HOH HOH . E 5 HOH A 67 867 62 HOH HOH . E 5 HOH A 68 868 187 HOH HOH . E 5 HOH A 69 869 120 HOH HOH . E 5 HOH A 70 870 184 HOH HOH . E 5 HOH A 71 871 74 HOH HOH . E 5 HOH A 72 872 253 HOH HOH . E 5 HOH A 73 873 43 HOH HOH . E 5 HOH A 74 874 65 HOH HOH . E 5 HOH A 75 875 202 HOH HOH . E 5 HOH A 76 876 118 HOH HOH . E 5 HOH A 77 877 106 HOH HOH . E 5 HOH A 78 878 113 HOH HOH . E 5 HOH A 79 879 209 HOH HOH . E 5 HOH A 80 880 300 HOH HOH . E 5 HOH A 81 881 12 HOH HOH . E 5 HOH A 82 882 152 HOH HOH . E 5 HOH A 83 883 48 HOH HOH . E 5 HOH A 84 884 37 HOH HOH . E 5 HOH A 85 885 68 HOH HOH . E 5 HOH A 86 886 75 HOH HOH . E 5 HOH A 87 887 27 HOH HOH . E 5 HOH A 88 888 225 HOH HOH . E 5 HOH A 89 889 77 HOH HOH . E 5 HOH A 90 890 150 HOH HOH . E 5 HOH A 91 891 183 HOH HOH . E 5 HOH A 92 892 30 HOH HOH . E 5 HOH A 93 893 117 HOH HOH . E 5 HOH A 94 894 31 HOH HOH . E 5 HOH A 95 895 7 HOH HOH . E 5 HOH A 96 896 9 HOH HOH . E 5 HOH A 97 897 47 HOH HOH . E 5 HOH A 98 898 4 HOH HOH . E 5 HOH A 99 899 232 HOH HOH . E 5 HOH A 100 900 226 HOH HOH . E 5 HOH A 101 901 34 HOH HOH . E 5 HOH A 102 902 143 HOH HOH . E 5 HOH A 103 903 100 HOH HOH . E 5 HOH A 104 904 8 HOH HOH . E 5 HOH A 105 905 277 HOH HOH . E 5 HOH A 106 906 39 HOH HOH . E 5 HOH A 107 907 174 HOH HOH . E 5 HOH A 108 908 54 HOH HOH . E 5 HOH A 109 909 45 HOH HOH . E 5 HOH A 110 910 70 HOH HOH . E 5 HOH A 111 911 135 HOH HOH . E 5 HOH A 112 912 53 HOH HOH . E 5 HOH A 113 913 1 HOH HOH . E 5 HOH A 114 914 10 HOH HOH . E 5 HOH A 115 915 32 HOH HOH . E 5 HOH A 116 916 101 HOH HOH . E 5 HOH A 117 917 85 HOH HOH . E 5 HOH A 118 918 122 HOH HOH . E 5 HOH A 119 919 124 HOH HOH . E 5 HOH A 120 920 294 HOH HOH . E 5 HOH A 121 921 94 HOH HOH . E 5 HOH A 122 922 50 HOH HOH . E 5 HOH A 123 923 129 HOH HOH . E 5 HOH A 124 924 91 HOH HOH . E 5 HOH A 125 925 49 HOH HOH . E 5 HOH A 126 926 123 HOH HOH . E 5 HOH A 127 927 35 HOH HOH . E 5 HOH A 128 928 182 HOH HOH . E 5 HOH A 129 929 21 HOH HOH . E 5 HOH A 130 930 93 HOH HOH . E 5 HOH A 131 931 283 HOH HOH . E 5 HOH A 132 932 186 HOH HOH . E 5 HOH A 133 933 84 HOH HOH . E 5 HOH A 134 934 201 HOH HOH . E 5 HOH A 135 935 227 HOH HOH . E 5 HOH A 136 936 73 HOH HOH . E 5 HOH A 137 937 176 HOH HOH . E 5 HOH A 138 938 242 HOH HOH . E 5 HOH A 139 939 137 HOH HOH . E 5 HOH A 140 940 207 HOH HOH . E 5 HOH A 141 941 55 HOH HOH . E 5 HOH A 142 942 251 HOH HOH . E 5 HOH A 143 943 25 HOH HOH . E 5 HOH A 144 944 6 HOH HOH . E 5 HOH A 145 945 108 HOH HOH . E 5 HOH A 146 946 175 HOH HOH . E 5 HOH A 147 947 292 HOH HOH . E 5 HOH A 148 948 105 HOH HOH . E 5 HOH A 149 949 23 HOH HOH . E 5 HOH A 150 950 212 HOH HOH . E 5 HOH A 151 951 190 HOH HOH . E 5 HOH A 152 952 286 HOH HOH . E 5 HOH A 153 953 87 HOH HOH . E 5 HOH A 154 954 139 HOH HOH . E 5 HOH A 155 955 133 HOH HOH . E 5 HOH A 156 956 247 HOH HOH . E 5 HOH A 157 957 172 HOH HOH . E 5 HOH A 158 958 177 HOH HOH . E 5 HOH A 159 959 72 HOH HOH . E 5 HOH A 160 960 213 HOH HOH . E 5 HOH A 161 961 273 HOH HOH . E 5 HOH A 162 962 147 HOH HOH . E 5 HOH A 163 963 204 HOH HOH . E 5 HOH A 164 964 220 HOH HOH . E 5 HOH A 165 965 26 HOH HOH . E 5 HOH A 166 966 3 HOH HOH . E 5 HOH A 167 967 146 HOH HOH . E 5 HOH A 168 968 28 HOH HOH . E 5 HOH A 169 969 216 HOH HOH . E 5 HOH A 170 970 52 HOH HOH . E 5 HOH A 171 971 266 HOH HOH . E 5 HOH A 172 972 229 HOH HOH . E 5 HOH A 173 973 109 HOH HOH . E 5 HOH A 174 974 19 HOH HOH . E 5 HOH A 175 975 119 HOH HOH . E 5 HOH A 176 976 98 HOH HOH . E 5 HOH A 177 977 82 HOH HOH . E 5 HOH A 178 978 14 HOH HOH . E 5 HOH A 179 979 208 HOH HOH . E 5 HOH A 180 980 56 HOH HOH . E 5 HOH A 181 981 46 HOH HOH . E 5 HOH A 182 982 125 HOH HOH . E 5 HOH A 183 983 297 HOH HOH . E 5 HOH A 184 984 99 HOH HOH . E 5 HOH A 185 985 90 HOH HOH . E 5 HOH A 186 986 15 HOH HOH . E 5 HOH A 187 987 33 HOH HOH . E 5 HOH A 188 988 51 HOH HOH . E 5 HOH A 189 989 16 HOH HOH . E 5 HOH A 190 990 231 HOH HOH . E 5 HOH A 191 991 11 HOH HOH . E 5 HOH A 192 992 102 HOH HOH . E 5 HOH A 193 993 279 HOH HOH . E 5 HOH A 194 994 252 HOH HOH . E 5 HOH A 195 995 265 HOH HOH . E 5 HOH A 196 996 88 HOH HOH . E 5 HOH A 197 997 66 HOH HOH . E 5 HOH A 198 998 95 HOH HOH . E 5 HOH A 199 999 193 HOH HOH . E 5 HOH A 200 1000 104 HOH HOH . E 5 HOH A 201 1001 134 HOH HOH . E 5 HOH A 202 1002 131 HOH HOH . E 5 HOH A 203 1003 301 HOH HOH . E 5 HOH A 204 1004 57 HOH HOH . E 5 HOH A 205 1005 44 HOH HOH . E 5 HOH A 206 1006 256 HOH HOH . E 5 HOH A 207 1007 159 HOH HOH . E 5 HOH A 208 1008 299 HOH HOH . E 5 HOH A 209 1009 107 HOH HOH . E 5 HOH A 210 1010 18 HOH HOH . E 5 HOH A 211 1011 224 HOH HOH . E 5 HOH A 212 1012 240 HOH HOH . E 5 HOH A 213 1013 191 HOH HOH . E 5 HOH A 214 1014 96 HOH HOH . E 5 HOH A 215 1015 58 HOH HOH . E 5 HOH A 216 1016 185 HOH HOH . E 5 HOH A 217 1017 142 HOH HOH . E 5 HOH A 218 1018 112 HOH HOH . E 5 HOH A 219 1019 263 HOH HOH . E 5 HOH A 220 1020 282 HOH HOH . E 5 HOH A 221 1021 194 HOH HOH . E 5 HOH A 222 1022 223 HOH HOH . E 5 HOH A 223 1023 205 HOH HOH . E 5 HOH A 224 1024 171 HOH HOH . E 5 HOH A 225 1025 116 HOH HOH . E 5 HOH A 226 1026 78 HOH HOH . E 5 HOH A 227 1027 219 HOH HOH . E 5 HOH A 228 1028 211 HOH HOH . E 5 HOH A 229 1029 80 HOH HOH . E 5 HOH A 230 1030 136 HOH HOH . E 5 HOH A 231 1031 97 HOH HOH . E 5 HOH A 232 1032 170 HOH HOH . E 5 HOH A 233 1033 245 HOH HOH . E 5 HOH A 234 1034 163 HOH HOH . E 5 HOH A 235 1035 111 HOH HOH . E 5 HOH A 236 1036 291 HOH HOH . E 5 HOH A 237 1037 197 HOH HOH . E 5 HOH A 238 1038 239 HOH HOH . E 5 HOH A 239 1039 169 HOH HOH . E 5 HOH A 240 1040 180 HOH HOH . E 5 HOH A 241 1041 130 HOH HOH . E 5 HOH A 242 1042 166 HOH HOH . E 5 HOH A 243 1043 281 HOH HOH . E 5 HOH A 244 1044 151 HOH HOH . E 5 HOH A 245 1045 168 HOH HOH . E 5 HOH A 246 1046 246 HOH HOH . E 5 HOH A 247 1047 164 HOH HOH . E 5 HOH A 248 1048 261 HOH HOH . E 5 HOH A 249 1049 127 HOH HOH . E 5 HOH A 250 1050 280 HOH HOH . E 5 HOH A 251 1051 69 HOH HOH . E 5 HOH A 252 1052 86 HOH HOH . E 5 HOH A 253 1053 126 HOH HOH . E 5 HOH A 254 1054 237 HOH HOH . E 5 HOH A 255 1055 173 HOH HOH . E 5 HOH A 256 1056 200 HOH HOH . E 5 HOH A 257 1057 141 HOH HOH . E 5 HOH A 258 1058 203 HOH HOH . E 5 HOH A 259 1059 285 HOH HOH . E 5 HOH A 260 1060 236 HOH HOH . E 5 HOH A 261 1061 293 HOH HOH . E 5 HOH A 262 1062 76 HOH HOH . E 5 HOH A 263 1063 264 HOH HOH . E 5 HOH A 264 1064 148 HOH HOH . E 5 HOH A 265 1065 217 HOH HOH . E 5 HOH A 266 1066 155 HOH HOH . E 5 HOH A 267 1067 289 HOH HOH . E 5 HOH A 268 1068 287 HOH HOH . E 5 HOH A 269 1069 288 HOH HOH . E 5 HOH A 270 1070 215 HOH HOH . E 5 HOH A 271 1071 271 HOH HOH . E 5 HOH A 272 1072 156 HOH HOH . E 5 HOH A 273 1073 199 HOH HOH . E 5 HOH A 274 1074 165 HOH HOH . E 5 HOH A 275 1075 272 HOH HOH . E 5 HOH A 276 1076 269 HOH HOH . E 5 HOH A 277 1077 179 HOH HOH . E 5 HOH A 278 1078 218 HOH HOH . E 5 HOH A 279 1079 189 HOH HOH . E 5 HOH A 280 1080 278 HOH HOH . E 5 HOH A 281 1081 235 HOH HOH . E 5 HOH A 282 1082 257 HOH HOH . E 5 HOH A 283 1083 296 HOH HOH . E 5 HOH A 284 1084 115 HOH HOH . E 5 HOH A 285 1085 145 HOH HOH . E 5 HOH A 286 1086 270 HOH HOH . E 5 HOH A 287 1087 260 HOH HOH . E 5 HOH A 288 1088 259 HOH HOH . E 5 HOH A 289 1089 210 HOH HOH . E 5 HOH A 290 1090 276 HOH HOH . E 5 HOH A 291 1091 234 HOH HOH . E 5 HOH A 292 1092 83 HOH HOH . E 5 HOH A 293 1093 249 HOH HOH . E 5 HOH A 294 1094 195 HOH HOH . E 5 HOH A 295 1095 196 HOH HOH . E 5 HOH A 296 1096 244 HOH HOH . E 5 HOH A 297 1097 181 HOH HOH . E 5 HOH A 298 1098 110 HOH HOH . E 5 HOH A 299 1099 162 HOH HOH . E 5 HOH A 300 1100 103 HOH HOH . E 5 HOH A 301 1101 302 HOH HOH . E 5 HOH A 302 1102 290 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 53.65 _atom_site.Cartn_y 17.614 _atom_site.Cartn_z 66.723 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #