data_5Y7C # _model_server_result.job_id lNKzLW92F-4N1fnVszDiMg _model_server_result.datetime_utc '2024-11-19 06:38:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5Y7C # _exptl.entry_id 5Y7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.874 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hapalindole A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.23 _cell.angle_beta 106.6 _cell.angle_gamma 98.51 _cell.entry_id 5Y7C _cell.length_a 46.465 _cell.length_b 54.724 _cell.length_c 77.991 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H23 Cl N2' _chem_comp.formula_weight 338.874 _chem_comp.id 8O0 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hapalindole A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C11 8O0 sing 1 n n C17 C11 8O0 sing 2 n n C01 C02 8O0 doub 3 n y C01 C06 8O0 sing 4 n y C02 C03 8O0 sing 5 n y C11 C06 8O0 sing 6 n n C11 C10 8O0 sing 7 n n C06 C05 8O0 doub 8 n y C03 C04 8O0 doub 9 n y C10 C15 8O0 sing 10 n n C10 C09 8O0 sing 11 n n C05 C04 8O0 sing 12 n y C05 C08 8O0 sing 13 n y C04 N01 8O0 sing 14 n y C15 C14 8O0 sing 15 n n C09 C08 8O0 sing 16 n n C09 C12 8O0 sing 17 n n C08 C07 8O0 doub 18 n y N01 C07 8O0 sing 19 n y C21 N02 8O0 trip 20 n n C14 CL01 8O0 sing 21 n n C14 C13 8O0 sing 22 n n N02 C12 8O0 sing 23 n n C12 C13 8O0 sing 24 n n C13 C19 8O0 sing 25 n n C13 C16 8O0 sing 26 n n C16 C20 8O0 doub 27 n n C10 H1 8O0 sing 28 n n C15 H2 8O0 sing 29 n n C15 H3 8O0 sing 30 n n C17 H4 8O0 sing 31 n n C17 H5 8O0 sing 32 n n C17 H6 8O0 sing 33 n n C20 H7 8O0 sing 34 n n C20 H8 8O0 sing 35 n n C01 H12 8O0 sing 36 n n C02 H13 8O0 sing 37 n n C03 H14 8O0 sing 38 n n C07 H15 8O0 sing 39 n n C09 H16 8O0 sing 40 n n C12 H17 8O0 sing 41 n n C14 H18 8O0 sing 42 n n C16 H19 8O0 sing 43 n n C18 H20 8O0 sing 44 n n C18 H21 8O0 sing 45 n n C18 H22 8O0 sing 46 n n C19 H23 8O0 sing 47 n n C19 H24 8O0 sing 48 n n C19 H25 8O0 sing 49 n n N01 H26 8O0 sing 50 n n # _atom_sites.entry_id 5Y7C _atom_sites.fract_transf_matrix[1][1] 0.021522 _atom_sites.fract_transf_matrix[1][2] 0.003219 _atom_sites.fract_transf_matrix[1][3] 0.007869 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018477 _atom_sites.fract_transf_matrix[2][3] 0.00628 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DST A 1 401 1 DST DST . D 3 8O0 A 1 402 2 8O0 LIG . E 2 DST B 1 401 3 DST DST . F 3 8O0 B 1 402 4 8O0 LIG . G 4 HOH A 1 501 179 HOH HOH . G 4 HOH A 2 502 187 HOH HOH . G 4 HOH A 3 503 42 HOH HOH . G 4 HOH A 4 504 144 HOH HOH . G 4 HOH A 5 505 171 HOH HOH . G 4 HOH A 6 506 92 HOH HOH . G 4 HOH A 7 507 275 HOH HOH . G 4 HOH A 8 508 25 HOH HOH . G 4 HOH A 9 509 119 HOH HOH . G 4 HOH A 10 510 229 HOH HOH . G 4 HOH A 11 511 20 HOH HOH . G 4 HOH A 12 512 96 HOH HOH . G 4 HOH A 13 513 180 HOH HOH . G 4 HOH A 14 514 78 HOH HOH . G 4 HOH A 15 515 123 HOH HOH . G 4 HOH A 16 516 13 HOH HOH . G 4 HOH A 17 517 8 HOH HOH . G 4 HOH A 18 518 183 HOH HOH . G 4 HOH A 19 519 26 HOH HOH . G 4 HOH A 20 520 191 HOH HOH . G 4 HOH A 21 521 176 HOH HOH . G 4 HOH A 22 522 277 HOH HOH . G 4 HOH A 23 523 6 HOH HOH . G 4 HOH A 24 524 10 HOH HOH . G 4 HOH A 25 525 244 HOH HOH . G 4 HOH A 26 526 113 HOH HOH . G 4 HOH A 27 527 35 HOH HOH . G 4 HOH A 28 528 161 HOH HOH . G 4 HOH A 29 529 28 HOH HOH . G 4 HOH A 30 530 76 HOH HOH . G 4 HOH A 31 531 87 HOH HOH . G 4 HOH A 32 532 214 HOH HOH . G 4 HOH A 33 533 237 HOH HOH . G 4 HOH A 34 534 29 HOH HOH . G 4 HOH A 35 535 102 HOH HOH . G 4 HOH A 36 536 7 HOH HOH . G 4 HOH A 37 537 31 HOH HOH . G 4 HOH A 38 538 16 HOH HOH . G 4 HOH A 39 539 3 HOH HOH . G 4 HOH A 40 540 140 HOH HOH . G 4 HOH A 41 541 4 HOH HOH . G 4 HOH A 42 542 79 HOH HOH . G 4 HOH A 43 543 71 HOH HOH . G 4 HOH A 44 544 150 HOH HOH . G 4 HOH A 45 545 65 HOH HOH . G 4 HOH A 46 546 154 HOH HOH . G 4 HOH A 47 547 90 HOH HOH . G 4 HOH A 48 548 245 HOH HOH . G 4 HOH A 49 549 98 HOH HOH . G 4 HOH A 50 550 30 HOH HOH . G 4 HOH A 51 551 120 HOH HOH . G 4 HOH A 52 552 128 HOH HOH . G 4 HOH A 53 553 38 HOH HOH . G 4 HOH A 54 554 218 HOH HOH . G 4 HOH A 55 555 198 HOH HOH . G 4 HOH A 56 556 60 HOH HOH . G 4 HOH A 57 557 192 HOH HOH . G 4 HOH A 58 558 62 HOH HOH . G 4 HOH A 59 559 51 HOH HOH . G 4 HOH A 60 560 67 HOH HOH . G 4 HOH A 61 561 105 HOH HOH . G 4 HOH A 62 562 281 HOH HOH . G 4 HOH A 63 563 264 HOH HOH . G 4 HOH A 64 564 177 HOH HOH . G 4 HOH A 65 565 259 HOH HOH . G 4 HOH A 66 566 59 HOH HOH . G 4 HOH A 67 567 205 HOH HOH . G 4 HOH A 68 568 208 HOH HOH . G 4 HOH A 69 569 43 HOH HOH . G 4 HOH A 70 570 142 HOH HOH . G 4 HOH A 71 571 84 HOH HOH . G 4 HOH A 72 572 202 HOH HOH . G 4 HOH A 73 573 57 HOH HOH . G 4 HOH A 74 574 56 HOH HOH . G 4 HOH A 75 575 239 HOH HOH . G 4 HOH A 76 576 292 HOH HOH . G 4 HOH A 77 577 34 HOH HOH . G 4 HOH A 78 578 112 HOH HOH . G 4 HOH A 79 579 86 HOH HOH . G 4 HOH A 80 580 132 HOH HOH . G 4 HOH A 81 581 126 HOH HOH . G 4 HOH A 82 582 173 HOH HOH . G 4 HOH A 83 583 100 HOH HOH . G 4 HOH A 84 584 241 HOH HOH . G 4 HOH A 85 585 149 HOH HOH . G 4 HOH A 86 586 248 HOH HOH . G 4 HOH A 87 587 134 HOH HOH . G 4 HOH A 88 588 206 HOH HOH . G 4 HOH A 89 589 168 HOH HOH . G 4 HOH A 90 590 163 HOH HOH . G 4 HOH A 91 591 223 HOH HOH . G 4 HOH A 92 592 44 HOH HOH . G 4 HOH A 93 593 136 HOH HOH . G 4 HOH A 94 594 122 HOH HOH . G 4 HOH A 95 595 246 HOH HOH . G 4 HOH A 96 596 37 HOH HOH . G 4 HOH A 97 597 211 HOH HOH . G 4 HOH A 98 598 225 HOH HOH . G 4 HOH A 99 599 55 HOH HOH . G 4 HOH A 100 600 125 HOH HOH . G 4 HOH A 101 601 224 HOH HOH . G 4 HOH A 102 602 165 HOH HOH . G 4 HOH A 103 603 48 HOH HOH . G 4 HOH A 104 604 109 HOH HOH . G 4 HOH A 105 605 41 HOH HOH . G 4 HOH A 106 606 265 HOH HOH . G 4 HOH A 107 607 178 HOH HOH . G 4 HOH A 108 608 282 HOH HOH . G 4 HOH A 109 609 221 HOH HOH . G 4 HOH A 110 610 70 HOH HOH . G 4 HOH A 111 611 107 HOH HOH . G 4 HOH A 112 612 280 HOH HOH . G 4 HOH A 113 613 153 HOH HOH . G 4 HOH A 114 614 285 HOH HOH . G 4 HOH A 115 615 243 HOH HOH . G 4 HOH A 116 616 174 HOH HOH . G 4 HOH A 117 617 106 HOH HOH . G 4 HOH A 118 618 249 HOH HOH . G 4 HOH A 119 619 114 HOH HOH . G 4 HOH A 120 620 258 HOH HOH . G 4 HOH A 121 621 266 HOH HOH . G 4 HOH A 122 622 288 HOH HOH . G 4 HOH A 123 623 242 HOH HOH . G 4 HOH A 124 624 254 HOH HOH . H 4 HOH B 1 501 209 HOH HOH . H 4 HOH B 2 502 247 HOH HOH . H 4 HOH B 3 503 133 HOH HOH . H 4 HOH B 4 504 219 HOH HOH . H 4 HOH B 5 505 32 HOH HOH . H 4 HOH B 6 506 111 HOH HOH . H 4 HOH B 7 507 240 HOH HOH . H 4 HOH B 8 508 73 HOH HOH . H 4 HOH B 9 509 94 HOH HOH . H 4 HOH B 10 510 166 HOH HOH . H 4 HOH B 11 511 162 HOH HOH . H 4 HOH B 12 512 235 HOH HOH . H 4 HOH B 13 513 24 HOH HOH . H 4 HOH B 14 514 18 HOH HOH . H 4 HOH B 15 515 5 HOH HOH . H 4 HOH B 16 516 83 HOH HOH . H 4 HOH B 17 517 108 HOH HOH . H 4 HOH B 18 518 17 HOH HOH . H 4 HOH B 19 519 11 HOH HOH . H 4 HOH B 20 520 80 HOH HOH . H 4 HOH B 21 521 74 HOH HOH . H 4 HOH B 22 522 146 HOH HOH . H 4 HOH B 23 523 127 HOH HOH . H 4 HOH B 24 524 9 HOH HOH . H 4 HOH B 25 525 1 HOH HOH . H 4 HOH B 26 526 22 HOH HOH . H 4 HOH B 27 527 77 HOH HOH . H 4 HOH B 28 528 89 HOH HOH . H 4 HOH B 29 529 19 HOH HOH . H 4 HOH B 30 530 138 HOH HOH . H 4 HOH B 31 531 27 HOH HOH . H 4 HOH B 32 532 14 HOH HOH . H 4 HOH B 33 533 93 HOH HOH . H 4 HOH B 34 534 274 HOH HOH . H 4 HOH B 35 535 82 HOH HOH . H 4 HOH B 36 536 152 HOH HOH . H 4 HOH B 37 537 15 HOH HOH . H 4 HOH B 38 538 289 HOH HOH . H 4 HOH B 39 539 12 HOH HOH . H 4 HOH B 40 540 227 HOH HOH . H 4 HOH B 41 541 228 HOH HOH . H 4 HOH B 42 542 23 HOH HOH . H 4 HOH B 43 543 72 HOH HOH . H 4 HOH B 44 544 36 HOH HOH . H 4 HOH B 45 545 21 HOH HOH . H 4 HOH B 46 546 68 HOH HOH . H 4 HOH B 47 547 88 HOH HOH . H 4 HOH B 48 548 251 HOH HOH . H 4 HOH B 49 549 203 HOH HOH . H 4 HOH B 50 550 2 HOH HOH . H 4 HOH B 51 551 226 HOH HOH . H 4 HOH B 52 552 49 HOH HOH . H 4 HOH B 53 553 33 HOH HOH . H 4 HOH B 54 554 181 HOH HOH . H 4 HOH B 55 555 216 HOH HOH . H 4 HOH B 56 556 199 HOH HOH . H 4 HOH B 57 557 47 HOH HOH . H 4 HOH B 58 558 200 HOH HOH . H 4 HOH B 59 559 81 HOH HOH . H 4 HOH B 60 560 273 HOH HOH . H 4 HOH B 61 561 151 HOH HOH . H 4 HOH B 62 562 147 HOH HOH . H 4 HOH B 63 563 260 HOH HOH . H 4 HOH B 64 564 137 HOH HOH . H 4 HOH B 65 565 45 HOH HOH . H 4 HOH B 66 566 54 HOH HOH . H 4 HOH B 67 567 188 HOH HOH . H 4 HOH B 68 568 46 HOH HOH . H 4 HOH B 69 569 197 HOH HOH . H 4 HOH B 70 570 148 HOH HOH . H 4 HOH B 71 571 286 HOH HOH . H 4 HOH B 72 572 50 HOH HOH . H 4 HOH B 73 573 130 HOH HOH . H 4 HOH B 74 574 193 HOH HOH . H 4 HOH B 75 575 97 HOH HOH . H 4 HOH B 76 576 91 HOH HOH . H 4 HOH B 77 577 101 HOH HOH . H 4 HOH B 78 578 252 HOH HOH . H 4 HOH B 79 579 141 HOH HOH . H 4 HOH B 80 580 257 HOH HOH . H 4 HOH B 81 581 63 HOH HOH . H 4 HOH B 82 582 156 HOH HOH . H 4 HOH B 83 583 220 HOH HOH . H 4 HOH B 84 584 116 HOH HOH . H 4 HOH B 85 585 207 HOH HOH . H 4 HOH B 86 586 217 HOH HOH . H 4 HOH B 87 587 58 HOH HOH . H 4 HOH B 88 588 139 HOH HOH . H 4 HOH B 89 589 75 HOH HOH . H 4 HOH B 90 590 52 HOH HOH . H 4 HOH B 91 591 115 HOH HOH . H 4 HOH B 92 592 232 HOH HOH . H 4 HOH B 93 593 85 HOH HOH . H 4 HOH B 94 594 234 HOH HOH . H 4 HOH B 95 595 236 HOH HOH . H 4 HOH B 96 596 255 HOH HOH . H 4 HOH B 97 597 129 HOH HOH . H 4 HOH B 98 598 131 HOH HOH . H 4 HOH B 99 599 230 HOH HOH . H 4 HOH B 100 600 145 HOH HOH . H 4 HOH B 101 601 256 HOH HOH . H 4 HOH B 102 602 95 HOH HOH . H 4 HOH B 103 603 233 HOH HOH . H 4 HOH B 104 604 182 HOH HOH . H 4 HOH B 105 605 261 HOH HOH . H 4 HOH B 106 606 272 HOH HOH . H 4 HOH B 107 607 164 HOH HOH . H 4 HOH B 108 608 99 HOH HOH . H 4 HOH B 109 609 157 HOH HOH . H 4 HOH B 110 610 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8O0 . . . D 3 -0.267 10.263 36.177 1 44.67 ? C10 8O0 402 A 1 HETATM 2 C C13 8O0 . . . D 3 0.102 9.776 39.181 1 39.28 ? C13 8O0 402 A 1 HETATM 3 C C15 8O0 . . . D 3 1.106 9.93 36.802 1 41.58 ? C15 8O0 402 A 1 HETATM 4 C C17 8O0 . . . D 3 -1.513 10.819 34.042 1 43.45 ? C17 8O0 402 A 1 HETATM 5 C C20 8O0 . . . D 3 0.638 8.05 41.043 1 32.16 ? C20 8O0 402 A 1 HETATM 6 C C21 8O0 . . . D 3 -2.61 7.849 38.114 1 37.9 ? C21 8O0 402 A 1 HETATM 7 C C01 8O0 . . . D 3 0.696 13.339 34.187 1 41.59 ? C01 8O0 402 A 1 HETATM 8 C C02 8O0 . . . D 3 0.893 14.642 34.523 1 40.09 ? C02 8O0 402 A 1 HETATM 9 C C03 8O0 . . . D 3 0.508 15.144 35.716 1 36.33 ? C03 8O0 402 A 1 HETATM 10 C C04 8O0 . . . D 3 -0.08 14.283 36.562 1 41.76 ? C04 8O0 402 A 1 HETATM 11 C C05 8O0 . . . D 3 -0.26 12.996 36.219 1 40.98 ? C05 8O0 402 A 1 HETATM 12 C C06 8O0 . . . D 3 0.111 12.469 35.043 1 44.68 ? C06 8O0 402 A 1 HETATM 13 C C07 8O0 . . . D 3 -1.025 13.322 38.181 1 43.04 ? C07 8O0 402 A 1 HETATM 14 C C08 8O0 . . . D 3 -0.864 12.371 37.242 1 40.71 ? C08 8O0 402 A 1 HETATM 15 C C09 8O0 . . . D 3 -1.223 10.907 37.201 1 41.45 ? C09 8O0 402 A 1 HETATM 16 C C11 8O0 . . . D 3 -0.172 10.985 34.798 1 46.02 ? C11 8O0 402 A 1 HETATM 17 C C12 8O0 . . . D 3 -1.268 10.123 38.521 1 43.16 ? C12 8O0 402 A 1 HETATM 18 C C14 8O0 . . . D 3 1.05 9.149 38.124 1 44.85 ? C14 8O0 402 A 1 HETATM 19 C C16 8O0 . . . D 3 -0.202 8.733 40.257 1 33.95 ? C16 8O0 402 A 1 HETATM 20 C C18 8O0 . . . D 3 0.972 10.436 33.929 1 44.81 ? C18 8O0 402 A 1 HETATM 21 C C19 8O0 . . . D 3 0.708 11.047 39.84 1 38.13 ? C19 8O0 402 A 1 HETATM 22 N N01 8O0 . . . D 3 -0.55 14.424 37.735 1 43.91 ? N01 8O0 402 A 1 HETATM 23 N N02 8O0 . . . D 3 -2.025 8.838 38.277 1 40.94 ? N02 8O0 402 A 1 HETATM 24 CL CL01 8O0 . . . D 3 2.721 8.812 38.693 1 51.68 ? CL01 8O0 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #