data_5Y7R # _model_server_result.job_id pKpR-BARKqmjJGfLSiwkHg _model_server_result.datetime_utc '2024-11-05 07:53:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5Y7R # _exptl.entry_id 5Y7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y7R _cell.length_a 73.441 _cell.length_b 119.689 _cell.length_c 66.207 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 134 B HIS 134 1_555 B FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A OD1 ASP 136 B ASP 136 1_555 B FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 A NE2 HIS 211 B HIS 211 1_555 B FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 B FE FE . B FE 401 1_555 C O5 AKG . B AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 B FE FE . B FE 401 1_555 C O1 AKG . B AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc6 B FE FE . B FE 401 1_555 E O HOH . B HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Y7R _atom_sites.fract_transf_matrix[1][1] 0.013616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE B 1 401 1 FE FE . C 3 AKG B 1 402 1 AKG AKG . D 4 58K B 1 403 1 58K 58K . E 5 HOH B 1 501 57 HOH HOH . E 5 HOH B 2 502 139 HOH HOH . E 5 HOH B 3 503 159 HOH HOH . E 5 HOH B 4 504 114 HOH HOH . E 5 HOH B 5 505 136 HOH HOH . E 5 HOH B 6 506 126 HOH HOH . E 5 HOH B 7 507 165 HOH HOH . E 5 HOH B 8 508 54 HOH HOH . E 5 HOH B 9 509 32 HOH HOH . E 5 HOH B 10 510 163 HOH HOH . E 5 HOH B 11 511 1 HOH HOH . E 5 HOH B 12 512 82 HOH HOH . E 5 HOH B 13 513 87 HOH HOH . E 5 HOH B 14 514 141 HOH HOH . E 5 HOH B 15 515 76 HOH HOH . E 5 HOH B 16 516 160 HOH HOH . E 5 HOH B 17 517 158 HOH HOH . E 5 HOH B 18 518 179 HOH HOH . E 5 HOH B 19 519 91 HOH HOH . E 5 HOH B 20 520 24 HOH HOH . E 5 HOH B 21 521 80 HOH HOH . E 5 HOH B 22 522 3 HOH HOH . E 5 HOH B 23 523 28 HOH HOH . E 5 HOH B 24 524 62 HOH HOH . E 5 HOH B 25 525 63 HOH HOH . E 5 HOH B 26 526 89 HOH HOH . E 5 HOH B 27 527 2 HOH HOH . E 5 HOH B 28 528 49 HOH HOH . E 5 HOH B 29 529 8 HOH HOH . E 5 HOH B 30 530 86 HOH HOH . E 5 HOH B 31 531 19 HOH HOH . E 5 HOH B 32 532 170 HOH HOH . E 5 HOH B 33 533 88 HOH HOH . E 5 HOH B 34 534 15 HOH HOH . E 5 HOH B 35 535 209 HOH HOH . E 5 HOH B 36 536 227 HOH HOH . E 5 HOH B 37 537 25 HOH HOH . E 5 HOH B 38 538 128 HOH HOH . E 5 HOH B 39 539 47 HOH HOH . E 5 HOH B 40 540 162 HOH HOH . E 5 HOH B 41 541 58 HOH HOH . E 5 HOH B 42 542 81 HOH HOH . E 5 HOH B 43 543 125 HOH HOH . E 5 HOH B 44 544 10 HOH HOH . E 5 HOH B 45 545 122 HOH HOH . E 5 HOH B 46 546 157 HOH HOH . E 5 HOH B 47 547 21 HOH HOH . E 5 HOH B 48 548 206 HOH HOH . E 5 HOH B 49 549 164 HOH HOH . E 5 HOH B 50 550 65 HOH HOH . E 5 HOH B 51 551 77 HOH HOH . E 5 HOH B 52 552 6 HOH HOH . E 5 HOH B 53 553 138 HOH HOH . E 5 HOH B 54 554 64 HOH HOH . E 5 HOH B 55 555 5 HOH HOH . E 5 HOH B 56 556 84 HOH HOH . E 5 HOH B 57 557 201 HOH HOH . E 5 HOH B 58 558 46 HOH HOH . E 5 HOH B 59 559 16 HOH HOH . E 5 HOH B 60 560 205 HOH HOH . E 5 HOH B 61 561 129 HOH HOH . E 5 HOH B 62 562 150 HOH HOH . E 5 HOH B 63 563 14 HOH HOH . E 5 HOH B 64 564 200 HOH HOH . E 5 HOH B 65 565 39 HOH HOH . E 5 HOH B 66 566 213 HOH HOH . E 5 HOH B 67 567 53 HOH HOH . E 5 HOH B 68 568 199 HOH HOH . E 5 HOH B 69 569 90 HOH HOH . E 5 HOH B 70 570 92 HOH HOH . E 5 HOH B 71 571 45 HOH HOH . E 5 HOH B 72 572 31 HOH HOH . E 5 HOH B 73 573 120 HOH HOH . E 5 HOH B 74 574 29 HOH HOH . E 5 HOH B 75 575 110 HOH HOH . E 5 HOH B 76 576 44 HOH HOH . E 5 HOH B 77 577 40 HOH HOH . E 5 HOH B 78 578 98 HOH HOH . E 5 HOH B 79 579 96 HOH HOH . E 5 HOH B 80 580 13 HOH HOH . E 5 HOH B 81 581 226 HOH HOH . E 5 HOH B 82 582 27 HOH HOH . E 5 HOH B 83 583 36 HOH HOH . E 5 HOH B 84 584 228 HOH HOH . E 5 HOH B 85 585 108 HOH HOH . E 5 HOH B 86 586 146 HOH HOH . E 5 HOH B 87 587 26 HOH HOH . E 5 HOH B 88 588 7 HOH HOH . E 5 HOH B 89 589 68 HOH HOH . E 5 HOH B 90 590 121 HOH HOH . E 5 HOH B 91 591 74 HOH HOH . E 5 HOH B 92 592 107 HOH HOH . E 5 HOH B 93 593 203 HOH HOH . E 5 HOH B 94 594 73 HOH HOH . E 5 HOH B 95 595 12 HOH HOH . E 5 HOH B 96 596 67 HOH HOH . E 5 HOH B 97 597 171 HOH HOH . E 5 HOH B 98 598 55 HOH HOH . E 5 HOH B 99 599 140 HOH HOH . E 5 HOH B 100 600 52 HOH HOH . E 5 HOH B 101 601 41 HOH HOH . E 5 HOH B 102 602 60 HOH HOH . E 5 HOH B 103 603 134 HOH HOH . E 5 HOH B 104 604 4 HOH HOH . E 5 HOH B 105 605 48 HOH HOH . E 5 HOH B 106 606 105 HOH HOH . E 5 HOH B 107 607 35 HOH HOH . E 5 HOH B 108 608 42 HOH HOH . E 5 HOH B 109 609 17 HOH HOH . E 5 HOH B 110 610 56 HOH HOH . E 5 HOH B 111 611 20 HOH HOH . E 5 HOH B 112 612 38 HOH HOH . E 5 HOH B 113 613 11 HOH HOH . E 5 HOH B 114 614 71 HOH HOH . E 5 HOH B 115 615 66 HOH HOH . E 5 HOH B 116 616 104 HOH HOH . E 5 HOH B 117 617 154 HOH HOH . E 5 HOH B 118 618 50 HOH HOH . E 5 HOH B 119 619 97 HOH HOH . E 5 HOH B 120 620 224 HOH HOH . E 5 HOH B 121 621 183 HOH HOH . E 5 HOH B 122 622 37 HOH HOH . E 5 HOH B 123 623 94 HOH HOH . E 5 HOH B 124 624 34 HOH HOH . E 5 HOH B 125 625 23 HOH HOH . E 5 HOH B 126 626 115 HOH HOH . E 5 HOH B 127 627 33 HOH HOH . E 5 HOH B 128 628 182 HOH HOH . E 5 HOH B 129 629 109 HOH HOH . E 5 HOH B 130 630 145 HOH HOH . E 5 HOH B 131 631 118 HOH HOH . E 5 HOH B 132 632 127 HOH HOH . E 5 HOH B 133 633 220 HOH HOH . E 5 HOH B 134 634 75 HOH HOH . E 5 HOH B 135 635 117 HOH HOH . E 5 HOH B 136 636 18 HOH HOH . E 5 HOH B 137 637 149 HOH HOH . E 5 HOH B 138 638 132 HOH HOH . E 5 HOH B 139 639 168 HOH HOH . E 5 HOH B 140 640 113 HOH HOH . E 5 HOH B 141 641 211 HOH HOH . E 5 HOH B 142 642 79 HOH HOH . E 5 HOH B 143 643 9 HOH HOH . E 5 HOH B 144 644 83 HOH HOH . E 5 HOH B 145 645 112 HOH HOH . E 5 HOH B 146 646 208 HOH HOH . E 5 HOH B 147 647 223 HOH HOH . E 5 HOH B 148 648 101 HOH HOH . E 5 HOH B 149 649 103 HOH HOH . E 5 HOH B 150 650 184 HOH HOH . E 5 HOH B 151 651 78 HOH HOH . E 5 HOH B 152 652 176 HOH HOH . E 5 HOH B 153 653 207 HOH HOH . E 5 HOH B 154 654 43 HOH HOH . E 5 HOH B 155 655 214 HOH HOH . E 5 HOH B 156 656 190 HOH HOH . E 5 HOH B 157 657 153 HOH HOH . E 5 HOH B 158 658 204 HOH HOH . E 5 HOH B 159 659 210 HOH HOH . E 5 HOH B 160 660 130 HOH HOH . E 5 HOH B 161 661 172 HOH HOH . E 5 HOH B 162 662 221 HOH HOH . E 5 HOH B 163 663 100 HOH HOH . E 5 HOH B 164 664 219 HOH HOH . E 5 HOH B 165 665 131 HOH HOH . E 5 HOH B 166 666 195 HOH HOH . E 5 HOH B 167 667 70 HOH HOH . E 5 HOH B 168 668 30 HOH HOH . E 5 HOH B 169 669 229 HOH HOH . E 5 HOH B 170 670 169 HOH HOH . E 5 HOH B 171 671 161 HOH HOH . E 5 HOH B 172 672 69 HOH HOH . E 5 HOH B 173 673 111 HOH HOH . E 5 HOH B 174 674 225 HOH HOH . E 5 HOH B 175 675 102 HOH HOH . E 5 HOH B 176 676 116 HOH HOH . E 5 HOH B 177 677 72 HOH HOH . E 5 HOH B 178 678 188 HOH HOH . E 5 HOH B 179 679 144 HOH HOH . E 5 HOH B 180 680 124 HOH HOH . E 5 HOH B 181 681 156 HOH HOH . E 5 HOH B 182 682 99 HOH HOH . E 5 HOH B 183 683 51 HOH HOH . E 5 HOH B 184 684 196 HOH HOH . E 5 HOH B 185 685 61 HOH HOH . E 5 HOH B 186 686 119 HOH HOH . E 5 HOH B 187 687 22 HOH HOH . E 5 HOH B 188 688 173 HOH HOH . E 5 HOH B 189 689 85 HOH HOH . E 5 HOH B 190 690 59 HOH HOH . E 5 HOH B 191 691 174 HOH HOH . E 5 HOH B 192 692 106 HOH HOH . E 5 HOH B 193 693 192 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -21.253 _atom_site.Cartn_y -24.318 _atom_site.Cartn_z -5.766 _atom_site.occupancy 0.82 _atom_site.B_iso_or_equiv 54.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #