data_5Y7X # _model_server_result.job_id 9QTR5vULKZUF8uxYhMBZMA _model_server_result.datetime_utc '2024-12-27 17:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 5Y7X # _exptl.entry_id 5Y7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.4 _cell.angle_gamma 90 _cell.entry_id 5Y7X _cell.length_a 39.766 _cell.length_b 93.896 _cell.length_c 96.871 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D K K . A K 502 1_555 K O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.264 ? metalc ? metalc2 D K K . A K 502 1_555 K O HOH . A HOH 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 329 n n C1 O1 PGO sing 330 n n C1 H11 PGO sing 331 n n C1 H12 PGO sing 332 n n C2 C3 PGO sing 333 n n C2 O2 PGO sing 334 n n C2 H2 PGO sing 335 n n C3 H31 PGO sing 336 n n C3 H32 PGO sing 337 n n C3 H33 PGO sing 338 n n O1 HO1 PGO sing 339 n n O2 HO2 PGO sing 340 n n # _atom_sites.entry_id 5Y7X _atom_sites.fract_transf_matrix[1][1] 0.025147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003266 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8RR A 1 501 3 8RR LIG . D 3 K A 1 502 7 K K . E 4 CL A 1 503 2 CL CL . F 5 PGO A 1 504 1 PGO PGO . G 6 JZR A 1 505 1 JZR LIB . H 2 8RR B 1 501 2 8RR LIG . I 4 CL B 1 502 1 CL CL . J 6 JZR B 1 503 2 JZR LIB . K 7 HOH A 1 601 361 HOH HOH . K 7 HOH A 2 602 93 HOH HOH . K 7 HOH A 3 603 165 HOH HOH . K 7 HOH A 4 604 302 HOH HOH . K 7 HOH A 5 605 7 HOH HOH . K 7 HOH A 6 606 70 HOH HOH . K 7 HOH A 7 607 192 HOH HOH . K 7 HOH A 8 608 15 HOH HOH . K 7 HOH A 9 609 107 HOH HOH . K 7 HOH A 10 610 14 HOH HOH . K 7 HOH A 11 611 138 HOH HOH . K 7 HOH A 12 612 109 HOH HOH . K 7 HOH A 13 613 366 HOH HOH . K 7 HOH A 14 614 21 HOH HOH . K 7 HOH A 15 615 375 HOH HOH . K 7 HOH A 16 616 36 HOH HOH . K 7 HOH A 17 617 239 HOH HOH . K 7 HOH A 18 618 78 HOH HOH . K 7 HOH A 19 619 17 HOH HOH . K 7 HOH A 20 620 82 HOH HOH . K 7 HOH A 21 621 317 HOH HOH . K 7 HOH A 22 622 356 HOH HOH . K 7 HOH A 23 623 42 HOH HOH . K 7 HOH A 24 624 115 HOH HOH . K 7 HOH A 25 625 374 HOH HOH . K 7 HOH A 26 626 127 HOH HOH . K 7 HOH A 27 627 362 HOH HOH . K 7 HOH A 28 628 270 HOH HOH . K 7 HOH A 29 629 162 HOH HOH . K 7 HOH A 30 630 352 HOH HOH . K 7 HOH A 31 631 371 HOH HOH . K 7 HOH A 32 632 40 HOH HOH . K 7 HOH A 33 633 152 HOH HOH . K 7 HOH A 34 634 353 HOH HOH . K 7 HOH A 35 635 26 HOH HOH . K 7 HOH A 36 636 244 HOH HOH . K 7 HOH A 37 637 20 HOH HOH . K 7 HOH A 38 638 333 HOH HOH . K 7 HOH A 39 639 158 HOH HOH . K 7 HOH A 40 640 12 HOH HOH . K 7 HOH A 41 641 102 HOH HOH . K 7 HOH A 42 642 38 HOH HOH . K 7 HOH A 43 643 354 HOH HOH . K 7 HOH A 44 644 373 HOH HOH . K 7 HOH A 45 645 60 HOH HOH . K 7 HOH A 46 646 121 HOH HOH . K 7 HOH A 47 647 43 HOH HOH . K 7 HOH A 48 648 148 HOH HOH . K 7 HOH A 49 649 369 HOH HOH . K 7 HOH A 50 650 225 HOH HOH . K 7 HOH A 51 651 103 HOH HOH . K 7 HOH A 52 652 98 HOH HOH . K 7 HOH A 53 653 363 HOH HOH . K 7 HOH A 54 654 6 HOH HOH . K 7 HOH A 55 655 80 HOH HOH . K 7 HOH A 56 656 50 HOH HOH . K 7 HOH A 57 657 145 HOH HOH . K 7 HOH A 58 658 125 HOH HOH . K 7 HOH A 59 659 104 HOH HOH . K 7 HOH A 60 660 83 HOH HOH . K 7 HOH A 61 661 199 HOH HOH . K 7 HOH A 62 662 16 HOH HOH . K 7 HOH A 63 663 118 HOH HOH . K 7 HOH A 64 664 177 HOH HOH . K 7 HOH A 65 665 54 HOH HOH . K 7 HOH A 66 666 4 HOH HOH . K 7 HOH A 67 667 35 HOH HOH . K 7 HOH A 68 668 44 HOH HOH . K 7 HOH A 69 669 257 HOH HOH . K 7 HOH A 70 670 113 HOH HOH . K 7 HOH A 71 671 283 HOH HOH . K 7 HOH A 72 672 22 HOH HOH . K 7 HOH A 73 673 112 HOH HOH . K 7 HOH A 74 674 105 HOH HOH . K 7 HOH A 75 675 97 HOH HOH . K 7 HOH A 76 676 2 HOH HOH . K 7 HOH A 77 677 214 HOH HOH . K 7 HOH A 78 678 29 HOH HOH . K 7 HOH A 79 679 23 HOH HOH . K 7 HOH A 80 680 187 HOH HOH . K 7 HOH A 81 681 28 HOH HOH . K 7 HOH A 82 682 64 HOH HOH . K 7 HOH A 83 683 202 HOH HOH . K 7 HOH A 84 684 72 HOH HOH . K 7 HOH A 85 685 95 HOH HOH . K 7 HOH A 86 686 278 HOH HOH . K 7 HOH A 87 687 365 HOH HOH . K 7 HOH A 88 688 31 HOH HOH . K 7 HOH A 89 689 234 HOH HOH . K 7 HOH A 90 690 372 HOH HOH . K 7 HOH A 91 691 215 HOH HOH . K 7 HOH A 92 692 209 HOH HOH . K 7 HOH A 93 693 129 HOH HOH . K 7 HOH A 94 694 368 HOH HOH . K 7 HOH A 95 695 289 HOH HOH . K 7 HOH A 96 696 126 HOH HOH . K 7 HOH A 97 697 62 HOH HOH . K 7 HOH A 98 698 41 HOH HOH . K 7 HOH A 99 699 217 HOH HOH . K 7 HOH A 100 700 73 HOH HOH . K 7 HOH A 101 701 34 HOH HOH . K 7 HOH A 102 702 154 HOH HOH . K 7 HOH A 103 703 336 HOH HOH . K 7 HOH A 104 704 243 HOH HOH . K 7 HOH A 105 705 147 HOH HOH . K 7 HOH A 106 706 27 HOH HOH . K 7 HOH A 107 707 260 HOH HOH . K 7 HOH A 108 708 92 HOH HOH . K 7 HOH A 109 709 30 HOH HOH . K 7 HOH A 110 710 171 HOH HOH . K 7 HOH A 111 711 122 HOH HOH . K 7 HOH A 112 712 58 HOH HOH . K 7 HOH A 113 713 343 HOH HOH . K 7 HOH A 114 714 345 HOH HOH . K 7 HOH A 115 715 280 HOH HOH . K 7 HOH A 116 716 335 HOH HOH . K 7 HOH A 117 717 259 HOH HOH . K 7 HOH A 118 718 342 HOH HOH . K 7 HOH A 119 719 240 HOH HOH . K 7 HOH A 120 720 253 HOH HOH . K 7 HOH A 121 721 284 HOH HOH . K 7 HOH A 122 722 367 HOH HOH . K 7 HOH A 123 723 146 HOH HOH . K 7 HOH A 124 724 188 HOH HOH . K 7 HOH A 125 725 308 HOH HOH . K 7 HOH A 126 726 143 HOH HOH . K 7 HOH A 127 727 153 HOH HOH . K 7 HOH A 128 728 376 HOH HOH . K 7 HOH A 129 729 47 HOH HOH . K 7 HOH A 130 730 269 HOH HOH . K 7 HOH A 131 731 189 HOH HOH . K 7 HOH A 132 732 65 HOH HOH . K 7 HOH A 133 733 380 HOH HOH . K 7 HOH A 134 734 357 HOH HOH . K 7 HOH A 135 735 263 HOH HOH . K 7 HOH A 136 736 101 HOH HOH . K 7 HOH A 137 737 370 HOH HOH . K 7 HOH A 138 738 312 HOH HOH . K 7 HOH A 139 739 379 HOH HOH . K 7 HOH A 140 740 364 HOH HOH . K 7 HOH A 141 741 381 HOH HOH . K 7 HOH A 142 742 268 HOH HOH . K 7 HOH A 143 743 264 HOH HOH . K 7 HOH A 144 744 149 HOH HOH . K 7 HOH A 145 745 169 HOH HOH . K 7 HOH A 146 746 327 HOH HOH . K 7 HOH A 147 747 168 HOH HOH . K 7 HOH A 148 748 74 HOH HOH . K 7 HOH A 149 749 196 HOH HOH . K 7 HOH A 150 750 100 HOH HOH . K 7 HOH A 151 751 219 HOH HOH . K 7 HOH A 152 752 377 HOH HOH . K 7 HOH A 153 753 183 HOH HOH . K 7 HOH A 154 754 139 HOH HOH . K 7 HOH A 155 755 69 HOH HOH . K 7 HOH A 156 756 378 HOH HOH . K 7 HOH A 157 757 330 HOH HOH . K 7 HOH A 158 758 221 HOH HOH . K 7 HOH A 159 759 59 HOH HOH . K 7 HOH A 160 760 161 HOH HOH . K 7 HOH A 161 761 99 HOH HOH . K 7 HOH A 162 762 223 HOH HOH . K 7 HOH A 163 763 321 HOH HOH . L 7 HOH B 1 601 55 HOH HOH . L 7 HOH B 2 602 191 HOH HOH . L 7 HOH B 3 603 135 HOH HOH . L 7 HOH B 4 604 299 HOH HOH . L 7 HOH B 5 605 203 HOH HOH . L 7 HOH B 6 606 63 HOH HOH . L 7 HOH B 7 607 184 HOH HOH . L 7 HOH B 8 608 66 HOH HOH . L 7 HOH B 9 609 106 HOH HOH . L 7 HOH B 10 610 68 HOH HOH . L 7 HOH B 11 611 24 HOH HOH . L 7 HOH B 12 612 13 HOH HOH . L 7 HOH B 13 613 124 HOH HOH . L 7 HOH B 14 614 141 HOH HOH . L 7 HOH B 15 615 37 HOH HOH . L 7 HOH B 16 616 75 HOH HOH . L 7 HOH B 17 617 3 HOH HOH . L 7 HOH B 18 618 144 HOH HOH . L 7 HOH B 19 619 51 HOH HOH . L 7 HOH B 20 620 238 HOH HOH . L 7 HOH B 21 621 87 HOH HOH . L 7 HOH B 22 622 85 HOH HOH . L 7 HOH B 23 623 67 HOH HOH . L 7 HOH B 24 624 19 HOH HOH . L 7 HOH B 25 625 133 HOH HOH . L 7 HOH B 26 626 275 HOH HOH . L 7 HOH B 27 627 204 HOH HOH . L 7 HOH B 28 628 88 HOH HOH . L 7 HOH B 29 629 172 HOH HOH . L 7 HOH B 30 630 236 HOH HOH . L 7 HOH B 31 631 120 HOH HOH . L 7 HOH B 32 632 313 HOH HOH . L 7 HOH B 33 633 61 HOH HOH . L 7 HOH B 34 634 9 HOH HOH . L 7 HOH B 35 635 45 HOH HOH . L 7 HOH B 36 636 86 HOH HOH . L 7 HOH B 37 637 128 HOH HOH . L 7 HOH B 38 638 222 HOH HOH . L 7 HOH B 39 639 358 HOH HOH . L 7 HOH B 40 640 81 HOH HOH . L 7 HOH B 41 641 310 HOH HOH . L 7 HOH B 42 642 11 HOH HOH . L 7 HOH B 43 643 136 HOH HOH . L 7 HOH B 44 644 111 HOH HOH . L 7 HOH B 45 645 210 HOH HOH . L 7 HOH B 46 646 49 HOH HOH . L 7 HOH B 47 647 218 HOH HOH . L 7 HOH B 48 648 246 HOH HOH . L 7 HOH B 49 649 190 HOH HOH . L 7 HOH B 50 650 267 HOH HOH . L 7 HOH B 51 651 52 HOH HOH . L 7 HOH B 52 652 355 HOH HOH . L 7 HOH B 53 653 132 HOH HOH . L 7 HOH B 54 654 305 HOH HOH . L 7 HOH B 55 655 25 HOH HOH . L 7 HOH B 56 656 18 HOH HOH . L 7 HOH B 57 657 175 HOH HOH . L 7 HOH B 58 658 220 HOH HOH . L 7 HOH B 59 659 48 HOH HOH . L 7 HOH B 60 660 198 HOH HOH . L 7 HOH B 61 661 273 HOH HOH . L 7 HOH B 62 662 211 HOH HOH . L 7 HOH B 63 663 117 HOH HOH . L 7 HOH B 64 664 205 HOH HOH . L 7 HOH B 65 665 200 HOH HOH . L 7 HOH B 66 666 277 HOH HOH . L 7 HOH B 67 667 178 HOH HOH . L 7 HOH B 68 668 294 HOH HOH . L 7 HOH B 69 669 382 HOH HOH . L 7 HOH B 70 670 325 HOH HOH . L 7 HOH B 71 671 167 HOH HOH . L 7 HOH B 72 672 341 HOH HOH . L 7 HOH B 73 673 320 HOH HOH . L 7 HOH B 74 674 256 HOH HOH . L 7 HOH B 75 675 271 HOH HOH . L 7 HOH B 76 676 193 HOH HOH . L 7 HOH B 77 677 316 HOH HOH . L 7 HOH B 78 678 274 HOH HOH . L 7 HOH B 79 679 119 HOH HOH . L 7 HOH B 80 680 258 HOH HOH . L 7 HOH B 81 681 170 HOH HOH . L 7 HOH B 82 682 173 HOH HOH . L 7 HOH B 83 683 359 HOH HOH . L 7 HOH B 84 684 334 HOH HOH . L 7 HOH B 85 685 332 HOH HOH . L 7 HOH B 86 686 360 HOH HOH . L 7 HOH B 87 687 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . F 5 4.617 -33.44 43.078 1 47.45 ? C1 PGO 504 A 1 HETATM 2 C C2 PGO . . . F 5 3.58 -34.235 42.285 1 46.76 ? C2 PGO 504 A 1 HETATM 3 C C3 PGO . . . F 5 3.078 -35.457 43.062 1 51.11 ? C3 PGO 504 A 1 HETATM 4 O O1 PGO . . . F 5 4.247 -33.455 44.434 1 50.4 ? O1 PGO 504 A 1 HETATM 5 O O2 PGO . . . F 5 4.16 -34.673 41.09 1 52.01 ? O2 PGO 504 A 1 HETATM 6 H H11 PGO . . . F 5 4.643 -32.525 42.757 1 56.95 ? H11 PGO 504 A 1 HETATM 7 H H12 PGO . . . F 5 5.491 -33.848 42.974 1 56.95 ? H12 PGO 504 A 1 HETATM 8 H H2 PGO . . . F 5 2.827 -33.659 42.08 1 56.12 ? H2 PGO 504 A 1 HETATM 9 H H31 PGO . . . F 5 2.111 -35.426 43.124 1 61.34 ? H31 PGO 504 A 1 HETATM 10 H H32 PGO . . . F 5 3.46 -35.452 43.954 1 61.34 ? H32 PGO 504 A 1 HETATM 11 H H33 PGO . . . F 5 3.347 -36.267 42.6 1 61.34 ? H33 PGO 504 A 1 HETATM 12 H HO1 PGO . . . F 5 4.718 -34.027 44.85 1 60.48 ? HO1 PGO 504 A 1 HETATM 13 H HO2 PGO . . . F 5 4.743 -35.268 41.259 1 62.41 ? HO2 PGO 504 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #