data_5Y89
#
_model_server_result.job_id            dMFPZBjdW22JPt3hsUNI8A 
_model_server_result.datetime_utc      '2025-03-04 08:11:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y89 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":402}' 
#
_entry.id    5Y89 
#
_exptl.entry_id    5Y89 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5Y89 
_cell.length_a            199.166 
_cell.length_b            199.166 
_cell.length_c            117.736 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y89 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 53 A TYR 87 1_555 C FE HEM . A HEM 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc2 A OH TYR 53 A TYR 87 1_555 C FE HEM . A HEM 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc3 B OH TYR 53 B TYR 87 1_555 F FE HEM . B HEM 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.864 ? 
metalc ? metalc4 B OH TYR 53 B TYR 87 1_555 F FE HEM . B HEM 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.848 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     5Y89 
_atom_sites.fract_transf_matrix[1][1]    0.005021 
_atom_sites.fract_transf_matrix[1][2]    0.002899 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005798 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008494 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 401 306 HEM HEM . 
D 3 ACT A 1 402 307 ACT ACT . 
E 4 SO4 A 1 403 308 SO4 SO4 . 
F 2 HEM B 1 401 306 HEM HEM . 
G 3 ACT B 1 402 307 ACT ACT . 
H 4 SO4 B 1 403 308 SO4 SO4 . 
I 4 SO4 B 1 404 309 SO4 SO4 . 
J 5 HOH A 1 501 432 HOH HOH . 
J 5 HOH A 2 502 405 HOH HOH . 
J 5 HOH A 3 503 431 HOH HOH . 
J 5 HOH A 4 504 411 HOH HOH . 
J 5 HOH A 5 505 414 HOH HOH . 
J 5 HOH A 6 506 410 HOH HOH . 
J 5 HOH A 7 507 418 HOH HOH . 
J 5 HOH A 8 508 412 HOH HOH . 
J 5 HOH A 9 509 416 HOH HOH . 
J 5 HOH A 10 510 423 HOH HOH . 
J 5 HOH A 11 511 409 HOH HOH . 
J 5 HOH A 12 512 402 HOH HOH . 
J 5 HOH A 13 513 406 HOH HOH . 
J 5 HOH A 14 514 403 HOH HOH . 
J 5 HOH A 15 515 430 HOH HOH . 
J 5 HOH A 16 516 401 HOH HOH . 
J 5 HOH A 17 517 422 HOH HOH . 
J 5 HOH A 18 518 404 HOH HOH . 
J 5 HOH A 19 519 433 HOH HOH . 
J 5 HOH A 20 520 408 HOH HOH . 
J 5 HOH A 21 521 415 HOH HOH . 
J 5 HOH A 22 522 407 HOH HOH . 
J 5 HOH A 23 523 419 HOH HOH . 
J 5 HOH A 24 524 417 HOH HOH . 
J 5 HOH A 25 525 425 HOH HOH . 
J 5 HOH A 26 526 428 HOH HOH . 
J 5 HOH A 27 527 420 HOH HOH . 
J 5 HOH A 28 528 424 HOH HOH . 
J 5 HOH A 29 529 427 HOH HOH . 
J 5 HOH A 30 530 426 HOH HOH . 
J 5 HOH A 31 531 421 HOH HOH . 
J 5 HOH A 32 532 429 HOH HOH . 
J 5 HOH A 33 533 519 HOH HOH . 
K 5 HOH B 1 501 541 HOH HOH . 
K 5 HOH B 2 502 539 HOH HOH . 
K 5 HOH B 3 503 530 HOH HOH . 
K 5 HOH B 4 504 476 HOH HOH . 
K 5 HOH B 5 505 527 HOH HOH . 
K 5 HOH B 6 506 488 HOH HOH . 
K 5 HOH B 7 507 411 HOH HOH . 
K 5 HOH B 8 508 433 HOH HOH . 
K 5 HOH B 9 509 537 HOH HOH . 
K 5 HOH B 10 510 425 HOH HOH . 
K 5 HOH B 11 511 480 HOH HOH . 
K 5 HOH B 12 512 413 HOH HOH . 
K 5 HOH B 13 513 436 HOH HOH . 
K 5 HOH B 14 514 431 HOH HOH . 
K 5 HOH B 15 515 403 HOH HOH . 
K 5 HOH B 16 516 438 HOH HOH . 
K 5 HOH B 17 517 419 HOH HOH . 
K 5 HOH B 18 518 510 HOH HOH . 
K 5 HOH B 19 519 470 HOH HOH . 
K 5 HOH B 20 520 472 HOH HOH . 
K 5 HOH B 21 521 416 HOH HOH . 
K 5 HOH B 22 522 517 HOH HOH . 
K 5 HOH B 23 523 428 HOH HOH . 
K 5 HOH B 24 524 493 HOH HOH . 
K 5 HOH B 25 525 497 HOH HOH . 
K 5 HOH B 26 526 511 HOH HOH . 
K 5 HOH B 27 527 514 HOH HOH . 
K 5 HOH B 28 528 471 HOH HOH . 
K 5 HOH B 29 529 418 HOH HOH . 
K 5 HOH B 30 530 430 HOH HOH . 
K 5 HOH B 31 531 466 HOH HOH . 
K 5 HOH B 32 532 479 HOH HOH . 
K 5 HOH B 33 533 409 HOH HOH . 
K 5 HOH B 34 534 481 HOH HOH . 
K 5 HOH B 35 535 456 HOH HOH . 
K 5 HOH B 36 536 457 HOH HOH . 
K 5 HOH B 37 537 405 HOH HOH . 
K 5 HOH B 38 538 455 HOH HOH . 
K 5 HOH B 39 539 477 HOH HOH . 
K 5 HOH B 40 540 401 HOH HOH . 
K 5 HOH B 41 541 505 HOH HOH . 
K 5 HOH B 42 542 447 HOH HOH . 
K 5 HOH B 43 543 509 HOH HOH . 
K 5 HOH B 44 544 512 HOH HOH . 
K 5 HOH B 45 545 489 HOH HOH . 
K 5 HOH B 46 546 442 HOH HOH . 
K 5 HOH B 47 547 454 HOH HOH . 
K 5 HOH B 48 548 437 HOH HOH . 
K 5 HOH B 49 549 404 HOH HOH . 
K 5 HOH B 50 550 473 HOH HOH . 
K 5 HOH B 51 551 528 HOH HOH . 
K 5 HOH B 52 552 462 HOH HOH . 
K 5 HOH B 53 553 521 HOH HOH . 
K 5 HOH B 54 554 420 HOH HOH . 
K 5 HOH B 55 555 408 HOH HOH . 
K 5 HOH B 56 556 502 HOH HOH . 
K 5 HOH B 57 557 499 HOH HOH . 
K 5 HOH B 58 558 443 HOH HOH . 
K 5 HOH B 59 559 482 HOH HOH . 
K 5 HOH B 60 560 451 HOH HOH . 
K 5 HOH B 61 561 486 HOH HOH . 
K 5 HOH B 62 562 504 HOH HOH . 
K 5 HOH B 63 563 501 HOH HOH . 
K 5 HOH B 64 564 484 HOH HOH . 
K 5 HOH B 65 565 467 HOH HOH . 
K 5 HOH B 66 566 492 HOH HOH . 
K 5 HOH B 67 567 414 HOH HOH . 
K 5 HOH B 68 568 412 HOH HOH . 
K 5 HOH B 69 569 503 HOH HOH . 
K 5 HOH B 70 570 478 HOH HOH . 
K 5 HOH B 71 571 427 HOH HOH . 
K 5 HOH B 72 572 448 HOH HOH . 
K 5 HOH B 73 573 520 HOH HOH . 
K 5 HOH B 74 574 445 HOH HOH . 
K 5 HOH B 75 575 518 HOH HOH . 
K 5 HOH B 76 576 461 HOH HOH . 
K 5 HOH B 77 577 424 HOH HOH . 
K 5 HOH B 78 578 459 HOH HOH . 
K 5 HOH B 79 579 444 HOH HOH . 
K 5 HOH B 80 580 465 HOH HOH . 
K 5 HOH B 81 581 500 HOH HOH . 
K 5 HOH B 82 582 406 HOH HOH . 
K 5 HOH B 83 583 532 HOH HOH . 
K 5 HOH B 84 584 460 HOH HOH . 
K 5 HOH B 85 585 491 HOH HOH . 
K 5 HOH B 86 586 402 HOH HOH . 
K 5 HOH B 87 587 429 HOH HOH . 
K 5 HOH B 88 588 543 HOH HOH . 
K 5 HOH B 89 589 439 HOH HOH . 
K 5 HOH B 90 590 449 HOH HOH . 
K 5 HOH B 91 591 464 HOH HOH . 
K 5 HOH B 92 592 507 HOH HOH . 
K 5 HOH B 93 593 487 HOH HOH . 
K 5 HOH B 94 594 496 HOH HOH . 
K 5 HOH B 95 595 413 HOH HOH . 
K 5 HOH B 96 596 542 HOH HOH . 
K 5 HOH B 97 597 432 HOH HOH . 
K 5 HOH B 98 598 426 HOH HOH . 
K 5 HOH B 99 599 475 HOH HOH . 
K 5 HOH B 100 600 531 HOH HOH . 
K 5 HOH B 101 601 441 HOH HOH . 
K 5 HOH B 102 602 421 HOH HOH . 
K 5 HOH B 103 603 450 HOH HOH . 
K 5 HOH B 104 604 422 HOH HOH . 
K 5 HOH B 105 605 516 HOH HOH . 
K 5 HOH B 106 606 526 HOH HOH . 
K 5 HOH B 107 607 463 HOH HOH . 
K 5 HOH B 108 608 423 HOH HOH . 
K 5 HOH B 109 609 508 HOH HOH . 
K 5 HOH B 110 610 494 HOH HOH . 
K 5 HOH B 111 611 490 HOH HOH . 
K 5 HOH B 112 612 434 HOH HOH . 
K 5 HOH B 113 613 524 HOH HOH . 
K 5 HOH B 114 614 529 HOH HOH . 
K 5 HOH B 115 615 506 HOH HOH . 
K 5 HOH B 116 616 495 HOH HOH . 
K 5 HOH B 117 617 535 HOH HOH . 
K 5 HOH B 118 618 452 HOH HOH . 
K 5 HOH B 119 619 410 HOH HOH . 
K 5 HOH B 120 620 453 HOH HOH . 
K 5 HOH B 121 621 483 HOH HOH . 
K 5 HOH B 122 622 415 HOH HOH . 
K 5 HOH B 123 623 417 HOH HOH . 
K 5 HOH B 124 624 498 HOH HOH . 
K 5 HOH B 125 625 446 HOH HOH . 
K 5 HOH B 126 626 469 HOH HOH . 
K 5 HOH B 127 627 458 HOH HOH . 
K 5 HOH B 128 628 485 HOH HOH . 
K 5 HOH B 129 629 536 HOH HOH . 
K 5 HOH B 130 630 435 HOH HOH . 
K 5 HOH B 131 631 525 HOH HOH . 
K 5 HOH B 132 632 538 HOH HOH . 
K 5 HOH B 133 633 540 HOH HOH . 
K 5 HOH B 134 634 474 HOH HOH . 
K 5 HOH B 135 635 407 HOH HOH . 
K 5 HOH B 136 636 440 HOH HOH . 
K 5 HOH B 137 637 533 HOH HOH . 
K 5 HOH B 138 638 515 HOH HOH . 
K 5 HOH B 139 639 468 HOH HOH . 
K 5 HOH B 140 640 513 HOH HOH . 
K 5 HOH B 141 641 522 HOH HOH . 
K 5 HOH B 142 642 534 HOH HOH . 
K 5 HOH B 143 643 523 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . G 3 17.57 120.007 18.441 1 28.51 ? C ACT 402 B 1 
HETATM 2 O O ACT . . . G 3 17.789 120.957 17.668 1 29.99 ? O ACT 402 B 1 
HETATM 3 O OXT ACT . . . G 3 17.589 120.104 19.735 1 28.81 ? OXT ACT 402 B 1 
HETATM 4 C CH3 ACT . . . G 3 17.268 118.72 17.793 1 26.85 ? CH3 ACT 402 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#