data_5Y8B
#
_model_server_result.job_id            MT6G8Ev8NACe4Gcd8oH0bA 
_model_server_result.datetime_utc      '2025-03-04 08:43:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5Y8B 
#
_exptl.entry_id    5Y8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5Y8B 
_cell.length_a            71.039 
_cell.length_b            71.039 
_cell.length_c            78.206 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 14 A ASP 104 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc2 A OD2 ASP 14 A ASP 104 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc3 A OD2 ASP 70 A ASP 160 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc4 A OD2 ASP 94 A ASP 184 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc5 B MG MG . A MG 401 1_555 D O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc6 B MG MG . A MG 401 1_555 D O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 D O HOH . A HOH 503 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc8 C MG MG . A MG 402 1_555 D O HOH . A HOH 504 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc9 C MG MG . A MG 402 1_555 D O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc10 C MG MG . A MG 402 1_555 D O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc11 C MG MG . A MG 402 1_555 D O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5Y8B 
_atom_sites.fract_transf_matrix[1][1]    0.014077 
_atom_sites.fract_transf_matrix[1][2]    0.008127 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016254 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012787 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 361 MG MG . 
C 2 MG A 1 402 362 MG MG . 
D 3 HOH A 1 501 473 HOH HOH . 
D 3 HOH A 2 502 466 HOH HOH . 
D 3 HOH A 3 503 460 HOH HOH . 
D 3 HOH A 4 504 461 HOH HOH . 
D 3 HOH A 5 505 469 HOH HOH . 
D 3 HOH A 6 506 471 HOH HOH . 
D 3 HOH A 7 507 401 HOH HOH . 
D 3 HOH A 8 508 428 HOH HOH . 
D 3 HOH A 9 509 437 HOH HOH . 
D 3 HOH A 10 510 403 HOH HOH . 
D 3 HOH A 11 511 409 HOH HOH . 
D 3 HOH A 12 512 411 HOH HOH . 
D 3 HOH A 13 513 446 HOH HOH . 
D 3 HOH A 14 514 470 HOH HOH . 
D 3 HOH A 15 515 441 HOH HOH . 
D 3 HOH A 16 516 444 HOH HOH . 
D 3 HOH A 17 517 416 HOH HOH . 
D 3 HOH A 18 518 420 HOH HOH . 
D 3 HOH A 19 519 406 HOH HOH . 
D 3 HOH A 20 520 468 HOH HOH . 
D 3 HOH A 21 521 421 HOH HOH . 
D 3 HOH A 22 522 408 HOH HOH . 
D 3 HOH A 23 523 426 HOH HOH . 
D 3 HOH A 24 524 415 HOH HOH . 
D 3 HOH A 25 525 462 HOH HOH . 
D 3 HOH A 26 526 463 HOH HOH . 
D 3 HOH A 27 527 404 HOH HOH . 
D 3 HOH A 28 528 440 HOH HOH . 
D 3 HOH A 29 529 431 HOH HOH . 
D 3 HOH A 30 530 448 HOH HOH . 
D 3 HOH A 31 531 427 HOH HOH . 
D 3 HOH A 32 532 477 HOH HOH . 
D 3 HOH A 33 533 474 HOH HOH . 
D 3 HOH A 34 534 465 HOH HOH . 
D 3 HOH A 35 535 418 HOH HOH . 
D 3 HOH A 36 536 450 HOH HOH . 
D 3 HOH A 37 537 453 HOH HOH . 
D 3 HOH A 38 538 405 HOH HOH . 
D 3 HOH A 39 539 424 HOH HOH . 
D 3 HOH A 40 540 447 HOH HOH . 
D 3 HOH A 41 541 417 HOH HOH . 
D 3 HOH A 42 542 422 HOH HOH . 
D 3 HOH A 43 543 472 HOH HOH . 
D 3 HOH A 44 544 434 HOH HOH . 
D 3 HOH A 45 545 410 HOH HOH . 
D 3 HOH A 46 546 475 HOH HOH . 
D 3 HOH A 47 547 443 HOH HOH . 
D 3 HOH A 48 548 459 HOH HOH . 
D 3 HOH A 49 549 430 HOH HOH . 
D 3 HOH A 50 550 438 HOH HOH . 
D 3 HOH A 51 551 445 HOH HOH . 
D 3 HOH A 52 552 467 HOH HOH . 
D 3 HOH A 53 553 414 HOH HOH . 
D 3 HOH A 54 554 455 HOH HOH . 
D 3 HOH A 55 555 432 HOH HOH . 
D 3 HOH A 56 556 423 HOH HOH . 
D 3 HOH A 57 557 425 HOH HOH . 
D 3 HOH A 58 558 436 HOH HOH . 
D 3 HOH A 59 559 429 HOH HOH . 
D 3 HOH A 60 560 419 HOH HOH . 
D 3 HOH A 61 561 412 HOH HOH . 
D 3 HOH A 62 562 433 HOH HOH . 
D 3 HOH A 63 563 442 HOH HOH . 
D 3 HOH A 64 564 435 HOH HOH . 
D 3 HOH A 65 565 449 HOH HOH . 
D 3 HOH A 66 566 456 HOH HOH . 
D 3 HOH A 67 567 464 HOH HOH . 
D 3 HOH A 68 568 402 HOH HOH . 
D 3 HOH A 69 569 413 HOH HOH . 
D 3 HOH A 70 570 439 HOH HOH . 
D 3 HOH A 71 571 407 HOH HOH . 
D 3 HOH A 72 572 458 HOH HOH . 
D 3 HOH A 73 573 457 HOH HOH . 
D 3 HOH A 74 574 454 HOH HOH . 
D 3 HOH A 75 575 476 HOH HOH . 
D 3 HOH A 76 576 451 HOH HOH . 
D 3 HOH A 77 577 452 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -20.65 
_atom_site.Cartn_y               10.627 
_atom_site.Cartn_z               8.345 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#