data_5Y8C
#
_model_server_result.job_id            iy5qqJfbd3nPJ8X0k0dqbA 
_model_server_result.datetime_utc      '2024-11-28 16:57:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y8c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    5Y8C 
#
_exptl.entry_id    5Y8C 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y8C 
_cell.length_a            35.2 
_cell.length_b            47.2 
_cell.length_c            78.069 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5Y8C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     5Y8C 
_atom_sites.fract_transf_matrix[1][1]    0.028409 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NO3 A 1 201 1 NO3 NO3 . 
C 2 NO3 A 1 202 2 NO3 NO3 . 
D 3 8P9 A 1 203 1 8P9 E0E . 
E 4 EDO A 1 204 1 EDO EDO . 
F 4 EDO A 1 205 2 EDO EDO . 
G 5 GOL A 1 206 1 GOL GOL . 
H 6 HOH A 1 301 45 HOH HOH . 
H 6 HOH A 2 302 25 HOH HOH . 
H 6 HOH A 3 303 5 HOH HOH . 
H 6 HOH A 4 304 52 HOH HOH . 
H 6 HOH A 5 305 7 HOH HOH . 
H 6 HOH A 6 306 8 HOH HOH . 
H 6 HOH A 7 307 62 HOH HOH . 
H 6 HOH A 8 308 14 HOH HOH . 
H 6 HOH A 9 309 39 HOH HOH . 
H 6 HOH A 10 310 3 HOH HOH . 
H 6 HOH A 11 311 19 HOH HOH . 
H 6 HOH A 12 312 34 HOH HOH . 
H 6 HOH A 13 313 60 HOH HOH . 
H 6 HOH A 14 314 17 HOH HOH . 
H 6 HOH A 15 315 26 HOH HOH . 
H 6 HOH A 16 316 38 HOH HOH . 
H 6 HOH A 17 317 22 HOH HOH . 
H 6 HOH A 18 318 40 HOH HOH . 
H 6 HOH A 19 319 42 HOH HOH . 
H 6 HOH A 20 320 33 HOH HOH . 
H 6 HOH A 21 321 6 HOH HOH . 
H 6 HOH A 22 322 53 HOH HOH . 
H 6 HOH A 23 323 58 HOH HOH . 
H 6 HOH A 24 324 35 HOH HOH . 
H 6 HOH A 25 325 20 HOH HOH . 
H 6 HOH A 26 326 21 HOH HOH . 
H 6 HOH A 27 327 47 HOH HOH . 
H 6 HOH A 28 328 32 HOH HOH . 
H 6 HOH A 29 329 12 HOH HOH . 
H 6 HOH A 30 330 18 HOH HOH . 
H 6 HOH A 31 331 51 HOH HOH . 
H 6 HOH A 32 332 15 HOH HOH . 
H 6 HOH A 33 333 27 HOH HOH . 
H 6 HOH A 34 334 9 HOH HOH . 
H 6 HOH A 35 335 29 HOH HOH . 
H 6 HOH A 36 336 24 HOH HOH . 
H 6 HOH A 37 337 36 HOH HOH . 
H 6 HOH A 38 338 43 HOH HOH . 
H 6 HOH A 39 339 57 HOH HOH . 
H 6 HOH A 40 340 10 HOH HOH . 
H 6 HOH A 41 341 54 HOH HOH . 
H 6 HOH A 42 342 49 HOH HOH . 
H 6 HOH A 43 343 61 HOH HOH . 
H 6 HOH A 44 344 16 HOH HOH . 
H 6 HOH A 45 345 2 HOH HOH . 
H 6 HOH A 46 346 23 HOH HOH . 
H 6 HOH A 47 347 28 HOH HOH . 
H 6 HOH A 48 348 31 HOH HOH . 
H 6 HOH A 49 349 48 HOH HOH . 
H 6 HOH A 50 350 13 HOH HOH . 
H 6 HOH A 51 351 44 HOH HOH . 
H 6 HOH A 52 352 46 HOH HOH . 
H 6 HOH A 53 353 30 HOH HOH . 
H 6 HOH A 54 354 1 HOH HOH . 
H 6 HOH A 55 355 55 HOH HOH . 
H 6 HOH A 56 356 56 HOH HOH . 
H 6 HOH A 57 357 11 HOH HOH . 
H 6 HOH A 58 358 41 HOH HOH . 
H 6 HOH A 59 359 37 HOH HOH . 
H 6 HOH A 60 360 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 1.581 -19.084 -5.221 1 36.96 ? C1 GOL 206 A 1 
HETATM 2 O O1 GOL . . . G 5 1.223 -18.019 -4.337 1 36.28 ? O1 GOL 206 A 1 
HETATM 3 C C2 GOL . . . G 5 2.771 -19.839 -4.642 1 37.46 ? C2 GOL 206 A 1 
HETATM 4 O O2 GOL . . . G 5 3.82 -18.944 -4.281 1 34.27 ? O2 GOL 206 A 1 
HETATM 5 C C3 GOL . . . G 5 3.325 -20.89 -5.593 1 37.51 ? C3 GOL 206 A 1 
HETATM 6 O O3 GOL . . . G 5 2.314 -21.451 -6.427 1 39.85 ? O3 GOL 206 A 1 
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_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
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