data_5Y8N
#
_model_server_result.job_id            LEePnQM6aNezh1dnIEzPSw 
_model_server_result.datetime_utc      '2024-11-15 03:00:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y8n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":303}' 
#
_entry.id    5Y8N 
#
_exptl.entry_id    5Y8N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              72.063 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACRYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5Y8N 
_cell.length_a            129.16 
_cell.length_b            129.16 
_cell.length_c            70.43 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y8N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
#
_chem_comp.formula           'C3 H4 O2' 
_chem_comp.formula_weight    72.063 
_chem_comp.id                AKR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACRYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA CB AKR doub 20 n n 
CA C AKR sing 21 n n 
CA HA1 AKR sing 22 n n 
CB HB2 AKR sing 23 n n 
CB HB3 AKR sing 24 n n 
C O AKR doub 25 n n 
C OXT AKR sing 26 n n 
OXT HXT AKR sing 27 n n 
#
_atom_sites.entry_id                     5Y8N 
_atom_sites.fract_transf_matrix[1][1]    0.007742 
_atom_sites.fract_transf_matrix[1][2]    0.00447 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014198 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 301 301 NAD NAD . 
D 3 SER A 1 302 302 SER SER . 
E 3 SER A 1 303 303 SER SER . 
F 4 GOL A 1 304 304 GOL GOL . 
G 4 GOL A 1 305 305 GOL GOL . 
H 5 AKR A 1 306 306 AKR AKR . 
I 6 9ON A 1 307 307 9ON 9ON . 
J 2 NAD B 1 301 301 NAD NAD . 
K 3 SER B 1 302 302 SER SER . 
L 5 AKR B 1 303 303 AKR AKR . 
M 7 HOH A 1 401 401 HOH HOH . 
M 7 HOH A 2 402 402 HOH HOH . 
M 7 HOH A 3 403 403 HOH HOH . 
M 7 HOH A 4 404 404 HOH HOH . 
M 7 HOH A 5 405 408 HOH HOH . 
M 7 HOH A 6 406 407 HOH HOH . 
M 7 HOH A 7 407 406 HOH HOH . 
M 7 HOH A 8 408 410 HOH HOH . 
M 7 HOH A 9 409 408 HOH HOH . 
M 7 HOH A 10 410 409 HOH HOH . 
M 7 HOH A 11 411 412 HOH HOH . 
M 7 HOH A 12 412 411 HOH HOH . 
M 7 HOH A 13 413 413 HOH HOH . 
M 7 HOH A 14 414 415 HOH HOH . 
M 7 HOH A 15 415 414 HOH HOH . 
M 7 HOH A 16 416 416 HOH HOH . 
M 7 HOH A 17 417 419 HOH HOH . 
M 7 HOH A 18 418 417 HOH HOH . 
M 7 HOH A 19 419 418 HOH HOH . 
M 7 HOH A 20 420 420 HOH HOH . 
M 7 HOH A 21 421 421 HOH HOH . 
M 7 HOH A 22 422 422 HOH HOH . 
M 7 HOH A 23 423 425 HOH HOH . 
M 7 HOH A 24 424 423 HOH HOH . 
M 7 HOH A 25 425 424 HOH HOH . 
M 7 HOH A 26 426 426 HOH HOH . 
M 7 HOH A 27 427 430 HOH HOH . 
M 7 HOH A 28 428 429 HOH HOH . 
M 7 HOH A 29 429 431 HOH HOH . 
M 7 HOH A 30 430 428 HOH HOH . 
M 7 HOH A 31 431 435 HOH HOH . 
M 7 HOH A 32 432 427 HOH HOH . 
M 7 HOH A 33 433 432 HOH HOH . 
M 7 HOH A 34 434 433 HOH HOH . 
M 7 HOH A 35 435 436 HOH HOH . 
M 7 HOH A 36 436 434 HOH HOH . 
M 7 HOH A 37 437 439 HOH HOH . 
M 7 HOH A 38 438 437 HOH HOH . 
M 7 HOH A 39 439 438 HOH HOH . 
M 7 HOH A 40 440 440 HOH HOH . 
M 7 HOH A 41 441 441 HOH HOH . 
M 7 HOH A 42 442 443 HOH HOH . 
M 7 HOH A 43 443 442 HOH HOH . 
M 7 HOH A 44 444 447 HOH HOH . 
M 7 HOH A 45 445 444 HOH HOH . 
M 7 HOH A 46 446 445 HOH HOH . 
M 7 HOH A 47 447 448 HOH HOH . 
M 7 HOH A 48 448 446 HOH HOH . 
M 7 HOH A 49 449 449 HOH HOH . 
M 7 HOH A 50 450 453 HOH HOH . 
M 7 HOH A 51 451 456 HOH HOH . 
M 7 HOH A 52 452 455 HOH HOH . 
M 7 HOH A 53 453 452 HOH HOH . 
M 7 HOH A 54 454 454 HOH HOH . 
M 7 HOH A 55 455 450 HOH HOH . 
M 7 HOH A 56 456 451 HOH HOH . 
M 7 HOH A 57 457 457 HOH HOH . 
M 7 HOH A 58 458 459 HOH HOH . 
M 7 HOH A 59 459 460 HOH HOH . 
M 7 HOH A 60 460 458 HOH HOH . 
M 7 HOH A 61 461 462 HOH HOH . 
M 7 HOH A 62 462 461 HOH HOH . 
M 7 HOH A 63 463 465 HOH HOH . 
M 7 HOH A 64 464 464 HOH HOH . 
M 7 HOH A 65 465 463 HOH HOH . 
M 7 HOH A 66 466 466 HOH HOH . 
M 7 HOH A 67 467 468 HOH HOH . 
M 7 HOH A 68 468 469 HOH HOH . 
M 7 HOH A 69 469 467 HOH HOH . 
M 7 HOH A 70 470 470 HOH HOH . 
M 7 HOH A 71 471 473 HOH HOH . 
M 7 HOH A 72 472 471 HOH HOH . 
M 7 HOH A 73 473 475 HOH HOH . 
M 7 HOH A 74 474 472 HOH HOH . 
M 7 HOH A 75 475 474 HOH HOH . 
M 7 HOH A 76 476 476 HOH HOH . 
M 7 HOH A 77 477 478 HOH HOH . 
M 7 HOH A 78 478 477 HOH HOH . 
M 7 HOH A 79 479 479 HOH HOH . 
M 7 HOH A 80 480 480 HOH HOH . 
M 7 HOH A 81 481 481 HOH HOH . 
M 7 HOH A 82 482 482 HOH HOH . 
M 7 HOH A 83 483 483 HOH HOH . 
M 7 HOH A 84 484 484 HOH HOH . 
M 7 HOH A 85 485 485 HOH HOH . 
M 7 HOH A 86 486 486 HOH HOH . 
M 7 HOH A 87 487 487 HOH HOH . 
M 7 HOH A 88 488 488 HOH HOH . 
M 7 HOH A 89 489 489 HOH HOH . 
M 7 HOH A 90 490 490 HOH HOH . 
M 7 HOH A 91 491 491 HOH HOH . 
M 7 HOH A 92 492 492 HOH HOH . 
M 7 HOH A 93 493 493 HOH HOH . 
M 7 HOH A 94 494 495 HOH HOH . 
M 7 HOH A 95 495 494 HOH HOH . 
M 7 HOH A 96 496 496 HOH HOH . 
M 7 HOH A 97 497 497 HOH HOH . 
M 7 HOH A 98 498 498 HOH HOH . 
M 7 HOH A 99 499 499 HOH HOH . 
M 7 HOH A 100 500 500 HOH HOH . 
M 7 HOH A 101 501 501 HOH HOH . 
M 7 HOH A 102 502 502 HOH HOH . 
M 7 HOH A 103 503 503 HOH HOH . 
M 7 HOH A 104 504 504 HOH HOH . 
M 7 HOH A 105 505 505 HOH HOH . 
M 7 HOH A 106 506 506 HOH HOH . 
M 7 HOH A 107 507 507 HOH HOH . 
M 7 HOH A 108 508 508 HOH HOH . 
M 7 HOH A 109 509 509 HOH HOH . 
M 7 HOH A 110 510 510 HOH HOH . 
M 7 HOH A 111 511 511 HOH HOH . 
M 7 HOH A 112 512 512 HOH HOH . 
M 7 HOH A 113 513 513 HOH HOH . 
M 7 HOH A 114 514 514 HOH HOH . 
M 7 HOH A 115 515 515 HOH HOH . 
M 7 HOH A 116 516 517 HOH HOH . 
M 7 HOH A 117 517 516 HOH HOH . 
M 7 HOH A 118 518 518 HOH HOH . 
M 7 HOH A 119 519 519 HOH HOH . 
M 7 HOH A 120 520 520 HOH HOH . 
M 7 HOH A 121 521 521 HOH HOH . 
M 7 HOH A 122 522 522 HOH HOH . 
M 7 HOH A 123 523 523 HOH HOH . 
M 7 HOH A 124 524 524 HOH HOH . 
M 7 HOH A 125 525 525 HOH HOH . 
M 7 HOH A 126 526 526 HOH HOH . 
M 7 HOH A 127 527 527 HOH HOH . 
M 7 HOH A 128 528 528 HOH HOH . 
M 7 HOH A 129 529 529 HOH HOH . 
M 7 HOH A 130 530 530 HOH HOH . 
M 7 HOH A 131 531 531 HOH HOH . 
M 7 HOH A 132 532 532 HOH HOH . 
M 7 HOH A 133 533 533 HOH HOH . 
M 7 HOH A 134 534 536 HOH HOH . 
M 7 HOH A 135 535 534 HOH HOH . 
M 7 HOH A 136 536 537 HOH HOH . 
M 7 HOH A 137 537 535 HOH HOH . 
M 7 HOH A 138 538 538 HOH HOH . 
N 7 HOH B 1 401 403 HOH HOH . 
N 7 HOH B 2 402 402 HOH HOH . 
N 7 HOH B 3 403 401 HOH HOH . 
N 7 HOH B 4 404 405 HOH HOH . 
N 7 HOH B 5 405 404 HOH HOH . 
N 7 HOH B 6 406 406 HOH HOH . 
N 7 HOH B 7 407 405 HOH HOH . 
N 7 HOH B 8 408 407 HOH HOH . 
N 7 HOH B 9 409 409 HOH HOH . 
N 7 HOH B 10 410 413 HOH HOH . 
N 7 HOH B 11 411 410 HOH HOH . 
N 7 HOH B 12 412 416 HOH HOH . 
N 7 HOH B 13 413 411 HOH HOH . 
N 7 HOH B 14 414 412 HOH HOH . 
N 7 HOH B 15 415 415 HOH HOH . 
N 7 HOH B 16 416 414 HOH HOH . 
N 7 HOH B 17 417 421 HOH HOH . 
N 7 HOH B 18 418 417 HOH HOH . 
N 7 HOH B 19 419 419 HOH HOH . 
N 7 HOH B 20 420 418 HOH HOH . 
N 7 HOH B 21 421 420 HOH HOH . 
N 7 HOH B 22 422 422 HOH HOH . 
N 7 HOH B 23 423 427 HOH HOH . 
N 7 HOH B 24 424 426 HOH HOH . 
N 7 HOH B 25 425 425 HOH HOH . 
N 7 HOH B 26 426 424 HOH HOH . 
N 7 HOH B 27 427 423 HOH HOH . 
N 7 HOH B 28 428 431 HOH HOH . 
N 7 HOH B 29 429 428 HOH HOH . 
N 7 HOH B 30 430 433 HOH HOH . 
N 7 HOH B 31 431 435 HOH HOH . 
N 7 HOH B 32 432 430 HOH HOH . 
N 7 HOH B 33 433 432 HOH HOH . 
N 7 HOH B 34 434 429 HOH HOH . 
N 7 HOH B 35 435 434 HOH HOH . 
N 7 HOH B 36 436 438 HOH HOH . 
N 7 HOH B 37 437 436 HOH HOH . 
N 7 HOH B 38 438 441 HOH HOH . 
N 7 HOH B 39 439 437 HOH HOH . 
N 7 HOH B 40 440 439 HOH HOH . 
N 7 HOH B 41 441 440 HOH HOH . 
N 7 HOH B 42 442 442 HOH HOH . 
N 7 HOH B 43 443 445 HOH HOH . 
N 7 HOH B 44 444 443 HOH HOH . 
N 7 HOH B 45 445 444 HOH HOH . 
N 7 HOH B 46 446 448 HOH HOH . 
N 7 HOH B 47 447 447 HOH HOH . 
N 7 HOH B 48 448 449 HOH HOH . 
N 7 HOH B 49 449 446 HOH HOH . 
N 7 HOH B 50 450 450 HOH HOH . 
N 7 HOH B 51 451 451 HOH HOH . 
N 7 HOH B 52 452 452 HOH HOH . 
N 7 HOH B 53 453 453 HOH HOH . 
N 7 HOH B 54 454 455 HOH HOH . 
N 7 HOH B 55 455 457 HOH HOH . 
N 7 HOH B 56 456 456 HOH HOH . 
N 7 HOH B 57 457 460 HOH HOH . 
N 7 HOH B 58 458 458 HOH HOH . 
N 7 HOH B 59 459 454 HOH HOH . 
N 7 HOH B 60 460 459 HOH HOH . 
N 7 HOH B 61 461 461 HOH HOH . 
N 7 HOH B 62 462 462 HOH HOH . 
N 7 HOH B 63 463 465 HOH HOH . 
N 7 HOH B 64 464 463 HOH HOH . 
N 7 HOH B 65 465 466 HOH HOH . 
N 7 HOH B 66 466 464 HOH HOH . 
N 7 HOH B 67 467 467 HOH HOH . 
N 7 HOH B 68 468 468 HOH HOH . 
N 7 HOH B 69 469 471 HOH HOH . 
N 7 HOH B 70 470 470 HOH HOH . 
N 7 HOH B 71 471 469 HOH HOH . 
N 7 HOH B 72 472 474 HOH HOH . 
N 7 HOH B 73 473 472 HOH HOH . 
N 7 HOH B 74 474 473 HOH HOH . 
N 7 HOH B 75 475 478 HOH HOH . 
N 7 HOH B 76 476 475 HOH HOH . 
N 7 HOH B 77 477 477 HOH HOH . 
N 7 HOH B 78 478 476 HOH HOH . 
N 7 HOH B 79 479 480 HOH HOH . 
N 7 HOH B 80 480 479 HOH HOH . 
N 7 HOH B 81 481 483 HOH HOH . 
N 7 HOH B 82 482 482 HOH HOH . 
N 7 HOH B 83 483 481 HOH HOH . 
N 7 HOH B 84 484 484 HOH HOH . 
N 7 HOH B 85 485 485 HOH HOH . 
N 7 HOH B 86 486 486 HOH HOH . 
N 7 HOH B 87 487 489 HOH HOH . 
N 7 HOH B 88 488 487 HOH HOH . 
N 7 HOH B 89 489 488 HOH HOH . 
N 7 HOH B 90 490 490 HOH HOH . 
N 7 HOH B 91 491 491 HOH HOH . 
N 7 HOH B 92 492 492 HOH HOH . 
N 7 HOH B 93 493 493 HOH HOH . 
N 7 HOH B 94 494 494 HOH HOH . 
N 7 HOH B 95 495 495 HOH HOH . 
N 7 HOH B 96 496 496 HOH HOH . 
N 7 HOH B 97 497 497 HOH HOH . 
N 7 HOH B 98 498 499 HOH HOH . 
N 7 HOH B 99 499 498 HOH HOH . 
N 7 HOH B 100 500 502 HOH HOH . 
N 7 HOH B 101 501 500 HOH HOH . 
N 7 HOH B 102 502 501 HOH HOH . 
N 7 HOH B 103 503 503 HOH HOH . 
N 7 HOH B 104 504 504 HOH HOH . 
N 7 HOH B 105 505 505 HOH HOH . 
N 7 HOH B 106 506 507 HOH HOH . 
N 7 HOH B 107 507 506 HOH HOH . 
N 7 HOH B 108 508 508 HOH HOH . 
N 7 HOH B 109 509 509 HOH HOH . 
N 7 HOH B 110 510 510 HOH HOH . 
N 7 HOH B 111 511 511 HOH HOH . 
N 7 HOH B 112 512 512 HOH HOH . 
N 7 HOH B 113 513 513 HOH HOH . 
N 7 HOH B 114 514 514 HOH HOH . 
N 7 HOH B 115 515 515 HOH HOH . 
N 7 HOH B 116 516 516 HOH HOH . 
N 7 HOH B 117 517 518 HOH HOH . 
N 7 HOH B 118 518 517 HOH HOH . 
N 7 HOH B 119 519 519 HOH HOH . 
N 7 HOH B 120 520 520 HOH HOH . 
N 7 HOH B 121 521 521 HOH HOH . 
N 7 HOH B 122 522 522 HOH HOH . 
N 7 HOH B 123 523 523 HOH HOH . 
N 7 HOH B 124 524 525 HOH HOH . 
N 7 HOH B 125 525 524 HOH HOH . 
N 7 HOH B 126 526 526 HOH HOH . 
N 7 HOH B 127 527 527 HOH HOH . 
N 7 HOH B 128 528 528 HOH HOH . 
N 7 HOH B 129 529 529 HOH HOH . 
N 7 HOH B 130 530 530 HOH HOH . 
N 7 HOH B 131 531 531 HOH HOH . 
N 7 HOH B 132 532 532 HOH HOH . 
N 7 HOH B 133 533 533 HOH HOH . 
N 7 HOH B 134 534 534 HOH HOH . 
N 7 HOH B 135 535 535 HOH HOH . 
N 7 HOH B 136 536 536 HOH HOH . 
N 7 HOH B 137 537 537 HOH HOH . 
N 7 HOH B 138 538 538 HOH HOH . 
N 7 HOH B 139 539 539 HOH HOH . 
N 7 HOH B 140 540 540 HOH HOH . 
N 7 HOH B 141 541 541 HOH HOH . 
N 7 HOH B 142 542 542 HOH HOH . 
N 7 HOH B 143 543 543 HOH HOH . 
N 7 HOH B 144 544 544 HOH HOH . 
N 7 HOH B 145 545 545 HOH HOH . 
N 7 HOH B 146 546 546 HOH HOH . 
N 7 HOH B 147 547 547 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA AKR . . . L 5 14.753 38.735 41.349 1 59.5 ? CA AKR 303 B 1 
HETATM 2 C CB AKR . . . L 5 14.87 39.512 40.284 1 54.27 ? CB AKR 303 B 1 
HETATM 3 C C AKR . . . L 5 15.924 38.088 41.997 1 56.39 ? C AKR 303 B 1 
HETATM 4 O O AKR . . . L 5 17.082 38.314 41.606 1 51.84 ? O AKR 303 B 1 
HETATM 5 O OXT AKR . . . L 5 15.727 37.298 42.956 1 58.55 ? OXT AKR 303 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           5 
#