data_5Y8V
#
_model_server_result.job_id            8FMTTVhuftjbjxFiAyivNw 
_model_server_result.datetime_utc      '2024-10-28 02:35:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y8v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5Y8V 
#
_exptl.entry_id    5Y8V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y8V 
_cell.length_a            55.467 
_cell.length_b            57.212 
_cell.length_c            205.854 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y8V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G MG MG . C MG 201 1_555 K O HOH . C HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc2 G MG MG . C MG 201 1_555 K O HOH . C HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc3 H MG MG . D MG 201 1_555 L O HOH . D HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5Y8V 
_atom_sites.fract_transf_matrix[1][1]    0.018029 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004858 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG B 1 201 2 MG MG . 
F 2 MG A 1 201 3 MG MG . 
G 2 MG C 1 201 1 MG MG . 
H 2 MG D 1 201 4 MG MG . 
I 3 HOH B 1 301 39 HOH HOH . 
I 3 HOH B 2 302 46 HOH HOH . 
I 3 HOH B 3 303 66 HOH HOH . 
I 3 HOH B 4 304 6 HOH HOH . 
I 3 HOH B 5 305 16 HOH HOH . 
I 3 HOH B 6 306 44 HOH HOH . 
I 3 HOH B 7 307 85 HOH HOH . 
I 3 HOH B 8 308 36 HOH HOH . 
I 3 HOH B 9 309 51 HOH HOH . 
I 3 HOH B 10 310 62 HOH HOH . 
I 3 HOH B 11 311 25 HOH HOH . 
I 3 HOH B 12 312 59 HOH HOH . 
I 3 HOH B 13 313 84 HOH HOH . 
I 3 HOH B 14 314 83 HOH HOH . 
I 3 HOH B 15 315 53 HOH HOH . 
I 3 HOH B 16 316 57 HOH HOH . 
I 3 HOH B 17 317 58 HOH HOH . 
J 3 HOH A 1 301 69 HOH HOH . 
J 3 HOH A 2 302 12 HOH HOH . 
J 3 HOH A 3 303 4 HOH HOH . 
J 3 HOH A 4 304 45 HOH HOH . 
J 3 HOH A 5 305 17 HOH HOH . 
J 3 HOH A 6 306 37 HOH HOH . 
J 3 HOH A 7 307 35 HOH HOH . 
J 3 HOH A 8 308 67 HOH HOH . 
J 3 HOH A 9 309 79 HOH HOH . 
J 3 HOH A 10 310 22 HOH HOH . 
J 3 HOH A 11 311 32 HOH HOH . 
J 3 HOH A 12 312 42 HOH HOH . 
K 3 HOH C 1 301 73 HOH HOH . 
K 3 HOH C 2 302 24 HOH HOH . 
K 3 HOH C 3 303 68 HOH HOH . 
K 3 HOH C 4 304 13 HOH HOH . 
K 3 HOH C 5 305 1 HOH HOH . 
K 3 HOH C 6 306 48 HOH HOH . 
K 3 HOH C 7 307 80 HOH HOH . 
K 3 HOH C 8 308 18 HOH HOH . 
K 3 HOH C 9 309 43 HOH HOH . 
K 3 HOH C 10 310 76 HOH HOH . 
K 3 HOH C 11 311 14 HOH HOH . 
K 3 HOH C 12 312 78 HOH HOH . 
K 3 HOH C 13 313 11 HOH HOH . 
K 3 HOH C 14 314 60 HOH HOH . 
K 3 HOH C 15 315 87 HOH HOH . 
K 3 HOH C 16 316 3 HOH HOH . 
K 3 HOH C 17 317 86 HOH HOH . 
K 3 HOH C 18 318 40 HOH HOH . 
K 3 HOH C 19 319 70 HOH HOH . 
K 3 HOH C 20 320 72 HOH HOH . 
K 3 HOH C 21 321 65 HOH HOH . 
K 3 HOH C 22 322 50 HOH HOH . 
K 3 HOH C 23 323 8 HOH HOH . 
K 3 HOH C 24 324 63 HOH HOH . 
K 3 HOH C 25 325 54 HOH HOH . 
L 3 HOH D 1 301 2 HOH HOH . 
L 3 HOH D 2 302 74 HOH HOH . 
L 3 HOH D 3 303 52 HOH HOH . 
L 3 HOH D 4 304 5 HOH HOH . 
L 3 HOH D 5 305 9 HOH HOH . 
L 3 HOH D 6 306 23 HOH HOH . 
L 3 HOH D 7 307 21 HOH HOH . 
L 3 HOH D 8 308 75 HOH HOH . 
L 3 HOH D 9 309 20 HOH HOH . 
L 3 HOH D 10 310 30 HOH HOH . 
L 3 HOH D 11 311 56 HOH HOH . 
L 3 HOH D 12 312 29 HOH HOH . 
L 3 HOH D 13 313 33 HOH HOH . 
L 3 HOH D 14 314 82 HOH HOH . 
L 3 HOH D 15 315 77 HOH HOH . 
L 3 HOH D 16 316 81 HOH HOH . 
L 3 HOH D 17 317 31 HOH HOH . 
L 3 HOH D 18 318 49 HOH HOH . 
L 3 HOH D 19 319 10 HOH HOH . 
L 3 HOH D 20 320 61 HOH HOH . 
L 3 HOH D 21 321 26 HOH HOH . 
L 3 HOH D 22 322 71 HOH HOH . 
L 3 HOH D 23 323 7 HOH HOH . 
L 3 HOH D 24 324 38 HOH HOH . 
L 3 HOH D 25 325 47 HOH HOH . 
L 3 HOH D 26 326 41 HOH HOH . 
L 3 HOH D 27 327 27 HOH HOH . 
L 3 HOH D 28 328 34 HOH HOH . 
L 3 HOH D 29 329 64 HOH HOH . 
L 3 HOH D 30 330 19 HOH HOH . 
L 3 HOH D 31 331 15 HOH HOH . 
L 3 HOH D 32 332 55 HOH HOH . 
L 3 HOH D 33 333 28 HOH HOH . 
L 3 HOH D 34 334 88 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               33.681 
_atom_site.Cartn_y               10.495 
_atom_site.Cartn_z               -27.384 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.3 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#