data_5Y8Z # _model_server_result.job_id p0zYTYMec-MVnPktDH_uVQ _model_server_result.datetime_utc '2024-11-28 16:59:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5Y8Z # _exptl.entry_id 5Y8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y8Z _cell.length_a 39.48 _cell.length_b 48.27 _cell.length_c 77.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 110 A TYR 137 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc2 A O ILE 111 A ILE 138 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc3 A O ASN 113 A ASN 140 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 G NA NA . A NA 206 1_555 I O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 G NA NA . A NA 206 1_555 I O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc6 G NA NA . A NA 206 1_555 I O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Y8Z _atom_sites.fract_transf_matrix[1][1] 0.025329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8Q3 A 1 201 1 8Q3 E0H . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 4 NO3 A 1 204 1 NO3 NO3 . F 4 NO3 A 1 205 2 NO3 NO3 . G 5 NA A 1 206 1 NA NA . H 6 GOL A 1 207 1 GOL GOL . I 7 HOH A 1 301 83 HOH HOH . I 7 HOH A 2 302 14 HOH HOH . I 7 HOH A 3 303 32 HOH HOH . I 7 HOH A 4 304 77 HOH HOH . I 7 HOH A 5 305 81 HOH HOH . I 7 HOH A 6 306 71 HOH HOH . I 7 HOH A 7 307 15 HOH HOH . I 7 HOH A 8 308 35 HOH HOH . I 7 HOH A 9 309 34 HOH HOH . I 7 HOH A 10 310 22 HOH HOH . I 7 HOH A 11 311 20 HOH HOH . I 7 HOH A 12 312 12 HOH HOH . I 7 HOH A 13 313 38 HOH HOH . I 7 HOH A 14 314 29 HOH HOH . I 7 HOH A 15 315 72 HOH HOH . I 7 HOH A 16 316 36 HOH HOH . I 7 HOH A 17 317 27 HOH HOH . I 7 HOH A 18 318 55 HOH HOH . I 7 HOH A 19 319 23 HOH HOH . I 7 HOH A 20 320 28 HOH HOH . I 7 HOH A 21 321 25 HOH HOH . I 7 HOH A 22 322 10 HOH HOH . I 7 HOH A 23 323 24 HOH HOH . I 7 HOH A 24 324 60 HOH HOH . I 7 HOH A 25 325 79 HOH HOH . I 7 HOH A 26 326 13 HOH HOH . I 7 HOH A 27 327 2 HOH HOH . I 7 HOH A 28 328 53 HOH HOH . I 7 HOH A 29 329 5 HOH HOH . I 7 HOH A 30 330 54 HOH HOH . I 7 HOH A 31 331 31 HOH HOH . I 7 HOH A 32 332 56 HOH HOH . I 7 HOH A 33 333 11 HOH HOH . I 7 HOH A 34 334 18 HOH HOH . I 7 HOH A 35 335 76 HOH HOH . I 7 HOH A 36 336 41 HOH HOH . I 7 HOH A 37 337 45 HOH HOH . I 7 HOH A 38 338 9 HOH HOH . I 7 HOH A 39 339 52 HOH HOH . I 7 HOH A 40 340 16 HOH HOH . I 7 HOH A 41 341 80 HOH HOH . I 7 HOH A 42 342 21 HOH HOH . I 7 HOH A 43 343 49 HOH HOH . I 7 HOH A 44 344 63 HOH HOH . I 7 HOH A 45 345 1 HOH HOH . I 7 HOH A 46 346 67 HOH HOH . I 7 HOH A 47 347 26 HOH HOH . I 7 HOH A 48 348 70 HOH HOH . I 7 HOH A 49 349 84 HOH HOH . I 7 HOH A 50 350 8 HOH HOH . I 7 HOH A 51 351 46 HOH HOH . I 7 HOH A 52 352 51 HOH HOH . I 7 HOH A 53 353 33 HOH HOH . I 7 HOH A 54 354 37 HOH HOH . I 7 HOH A 55 355 17 HOH HOH . I 7 HOH A 56 356 19 HOH HOH . I 7 HOH A 57 357 7 HOH HOH . I 7 HOH A 58 358 78 HOH HOH . I 7 HOH A 59 359 43 HOH HOH . I 7 HOH A 60 360 4 HOH HOH . I 7 HOH A 61 361 3 HOH HOH . I 7 HOH A 62 362 47 HOH HOH . I 7 HOH A 63 363 61 HOH HOH . I 7 HOH A 64 364 74 HOH HOH . I 7 HOH A 65 365 75 HOH HOH . I 7 HOH A 66 366 65 HOH HOH . I 7 HOH A 67 367 40 HOH HOH . I 7 HOH A 68 368 64 HOH HOH . I 7 HOH A 69 369 87 HOH HOH . I 7 HOH A 70 370 48 HOH HOH . I 7 HOH A 71 371 39 HOH HOH . I 7 HOH A 72 372 50 HOH HOH . I 7 HOH A 73 373 68 HOH HOH . I 7 HOH A 74 374 42 HOH HOH . I 7 HOH A 75 375 58 HOH HOH . I 7 HOH A 76 376 69 HOH HOH . I 7 HOH A 77 377 30 HOH HOH . I 7 HOH A 78 378 82 HOH HOH . I 7 HOH A 79 379 86 HOH HOH . I 7 HOH A 80 380 62 HOH HOH . I 7 HOH A 81 381 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x -18.323 _atom_site.Cartn_y 6.121 _atom_site.Cartn_z -4.026 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 206 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #