data_5Y94 # _model_server_result.job_id tBj4I6GafVHG5qcF6VWnlg _model_server_result.datetime_utc '2024-10-19 03:37:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5Y94 # _exptl.entry_id 5Y94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y94 _cell.length_a 38.85 _cell.length_b 48.31 _cell.length_c 77.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 110 A TYR 137 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A O ILE 111 A ILE 138 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc3 A O ASN 113 A ASN 140 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 F NA NA . A NA 205 1_555 G O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 F NA NA . A NA 205 1_555 G O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc6 F NA NA . A NA 205 1_555 G O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 172 n n C1 C2 GOL sing 173 n n C1 H11 GOL sing 174 n n C1 H12 GOL sing 175 n n O1 HO1 GOL sing 176 n n C2 O2 GOL sing 177 n n C2 C3 GOL sing 178 n n C2 H2 GOL sing 179 n n O2 HO2 GOL sing 180 n n C3 O3 GOL sing 181 n n C3 H31 GOL sing 182 n n C3 H32 GOL sing 183 n n O3 HO3 GOL sing 184 n n # _atom_sites.entry_id 5Y94 _atom_sites.fract_transf_matrix[1][1] 0.02574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8QC A 1 201 1 8QC E0J . C 3 NO3 A 1 202 1 NO3 NO3 . D 3 NO3 A 1 203 2 NO3 NO3 . E 4 GOL A 1 204 1 GOL GOL . F 5 NA A 1 205 1 NA NA . G 6 HOH A 1 301 53 HOH HOH . G 6 HOH A 2 302 36 HOH HOH . G 6 HOH A 3 303 11 HOH HOH . G 6 HOH A 4 304 10 HOH HOH . G 6 HOH A 5 305 19 HOH HOH . G 6 HOH A 6 306 27 HOH HOH . G 6 HOH A 7 307 17 HOH HOH . G 6 HOH A 8 308 16 HOH HOH . G 6 HOH A 9 309 18 HOH HOH . G 6 HOH A 10 310 39 HOH HOH . G 6 HOH A 11 311 28 HOH HOH . G 6 HOH A 12 312 20 HOH HOH . G 6 HOH A 13 313 1 HOH HOH . G 6 HOH A 14 314 21 HOH HOH . G 6 HOH A 15 315 25 HOH HOH . G 6 HOH A 16 316 42 HOH HOH . G 6 HOH A 17 317 45 HOH HOH . G 6 HOH A 18 318 54 HOH HOH . G 6 HOH A 19 319 24 HOH HOH . G 6 HOH A 20 320 51 HOH HOH . G 6 HOH A 21 321 14 HOH HOH . G 6 HOH A 22 322 9 HOH HOH . G 6 HOH A 23 323 52 HOH HOH . G 6 HOH A 24 324 7 HOH HOH . G 6 HOH A 25 325 41 HOH HOH . G 6 HOH A 26 326 34 HOH HOH . G 6 HOH A 27 327 15 HOH HOH . G 6 HOH A 28 328 60 HOH HOH . G 6 HOH A 29 329 32 HOH HOH . G 6 HOH A 30 330 13 HOH HOH . G 6 HOH A 31 331 4 HOH HOH . G 6 HOH A 32 332 8 HOH HOH . G 6 HOH A 33 333 38 HOH HOH . G 6 HOH A 34 334 37 HOH HOH . G 6 HOH A 35 335 43 HOH HOH . G 6 HOH A 36 336 44 HOH HOH . G 6 HOH A 37 337 3 HOH HOH . G 6 HOH A 38 338 23 HOH HOH . G 6 HOH A 39 339 40 HOH HOH . G 6 HOH A 40 340 50 HOH HOH . G 6 HOH A 41 341 47 HOH HOH . G 6 HOH A 42 342 59 HOH HOH . G 6 HOH A 43 343 22 HOH HOH . G 6 HOH A 44 344 12 HOH HOH . G 6 HOH A 45 345 31 HOH HOH . G 6 HOH A 46 346 49 HOH HOH . G 6 HOH A 47 347 6 HOH HOH . G 6 HOH A 48 348 33 HOH HOH . G 6 HOH A 49 349 58 HOH HOH . G 6 HOH A 50 350 5 HOH HOH . G 6 HOH A 51 351 57 HOH HOH . G 6 HOH A 52 352 46 HOH HOH . G 6 HOH A 53 353 56 HOH HOH . G 6 HOH A 54 354 62 HOH HOH . G 6 HOH A 55 355 55 HOH HOH . G 6 HOH A 56 356 30 HOH HOH . G 6 HOH A 57 357 2 HOH HOH . G 6 HOH A 58 358 35 HOH HOH . G 6 HOH A 59 359 61 HOH HOH . G 6 HOH A 60 360 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -20.772 4.789 6.552 1 31.89 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . E 4 -19.758 5.403 7.338 1 25.05 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . E 4 -21.954 5.69 6.201 1 35.79 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . E 4 -21.927 7.075 6.65 1 32.09 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . E 4 -22.078 5.646 4.69 1 41.48 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . E 4 -22.58 6.902 4.21 1 48.2 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #