data_5Y98
#
_model_server_result.job_id            k6jZtyuYtG_5JQbbL-2jwg 
_model_server_result.datetime_utc      '2024-11-14 06:04:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y98 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5Y98 
#
_exptl.entry_id    5Y98 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y98 
_cell.length_a            33.98 
_cell.length_b            65.97 
_cell.length_c            75.88 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y98 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5Y98 
_atom_sites.fract_transf_matrix[1][1]    0.029429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015158 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013179 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 201 GOL GOL . 
C 3 HOH A 1 301 387 HOH HOH . 
C 3 HOH A 2 302 1 HOH HOH . 
C 3 HOH A 3 303 501 HOH HOH . 
C 3 HOH A 4 304 515 HOH HOH . 
C 3 HOH A 5 305 455 HOH HOH . 
C 3 HOH A 6 306 494 HOH HOH . 
C 3 HOH A 7 307 458 HOH HOH . 
C 3 HOH A 8 308 433 HOH HOH . 
C 3 HOH A 9 309 448 HOH HOH . 
C 3 HOH A 10 310 365 HOH HOH . 
C 3 HOH A 11 311 394 HOH HOH . 
C 3 HOH A 12 312 342 HOH HOH . 
C 3 HOH A 13 313 485 HOH HOH . 
C 3 HOH A 14 314 445 HOH HOH . 
C 3 HOH A 15 315 372 HOH HOH . 
C 3 HOH A 16 316 399 HOH HOH . 
C 3 HOH A 17 317 327 HOH HOH . 
C 3 HOH A 18 318 414 HOH HOH . 
C 3 HOH A 19 319 486 HOH HOH . 
C 3 HOH A 20 320 378 HOH HOH . 
C 3 HOH A 21 321 334 HOH HOH . 
C 3 HOH A 22 322 446 HOH HOH . 
C 3 HOH A 23 323 497 HOH HOH . 
C 3 HOH A 24 324 483 HOH HOH . 
C 3 HOH A 25 325 339 HOH HOH . 
C 3 HOH A 26 326 386 HOH HOH . 
C 3 HOH A 27 327 477 HOH HOH . 
C 3 HOH A 28 328 439 HOH HOH . 
C 3 HOH A 29 329 462 HOH HOH . 
C 3 HOH A 30 330 425 HOH HOH . 
C 3 HOH A 31 331 418 HOH HOH . 
C 3 HOH A 32 332 373 HOH HOH . 
C 3 HOH A 33 333 377 HOH HOH . 
C 3 HOH A 34 334 318 HOH HOH . 
C 3 HOH A 35 335 347 HOH HOH . 
C 3 HOH A 36 336 374 HOH HOH . 
C 3 HOH A 37 337 366 HOH HOH . 
C 3 HOH A 38 338 305 HOH HOH . 
C 3 HOH A 39 339 312 HOH HOH . 
C 3 HOH A 40 340 412 HOH HOH . 
C 3 HOH A 41 341 369 HOH HOH . 
C 3 HOH A 42 342 505 HOH HOH . 
C 3 HOH A 43 343 431 HOH HOH . 
C 3 HOH A 44 344 454 HOH HOH . 
C 3 HOH A 45 345 314 HOH HOH . 
C 3 HOH A 46 346 343 HOH HOH . 
C 3 HOH A 47 347 323 HOH HOH . 
C 3 HOH A 48 348 402 HOH HOH . 
C 3 HOH A 49 349 383 HOH HOH . 
C 3 HOH A 50 350 332 HOH HOH . 
C 3 HOH A 51 351 309 HOH HOH . 
C 3 HOH A 52 352 322 HOH HOH . 
C 3 HOH A 53 353 392 HOH HOH . 
C 3 HOH A 54 354 338 HOH HOH . 
C 3 HOH A 55 355 498 HOH HOH . 
C 3 HOH A 56 356 324 HOH HOH . 
C 3 HOH A 57 357 514 HOH HOH . 
C 3 HOH A 58 358 304 HOH HOH . 
C 3 HOH A 59 359 345 HOH HOH . 
C 3 HOH A 60 360 333 HOH HOH . 
C 3 HOH A 61 361 341 HOH HOH . 
C 3 HOH A 62 362 422 HOH HOH . 
C 3 HOH A 63 363 350 HOH HOH . 
C 3 HOH A 64 364 430 HOH HOH . 
C 3 HOH A 65 365 407 HOH HOH . 
C 3 HOH A 66 366 317 HOH HOH . 
C 3 HOH A 67 367 382 HOH HOH . 
C 3 HOH A 68 368 363 HOH HOH . 
C 3 HOH A 69 369 340 HOH HOH . 
C 3 HOH A 70 370 315 HOH HOH . 
C 3 HOH A 71 371 346 HOH HOH . 
C 3 HOH A 72 372 473 HOH HOH . 
C 3 HOH A 73 373 435 HOH HOH . 
C 3 HOH A 74 374 310 HOH HOH . 
C 3 HOH A 75 375 328 HOH HOH . 
C 3 HOH A 76 376 353 HOH HOH . 
C 3 HOH A 77 377 413 HOH HOH . 
C 3 HOH A 78 378 356 HOH HOH . 
C 3 HOH A 79 379 406 HOH HOH . 
C 3 HOH A 80 380 313 HOH HOH . 
C 3 HOH A 81 381 509 HOH HOH . 
C 3 HOH A 82 382 488 HOH HOH . 
C 3 HOH A 83 383 370 HOH HOH . 
C 3 HOH A 84 384 306 HOH HOH . 
C 3 HOH A 85 385 359 HOH HOH . 
C 3 HOH A 86 386 302 HOH HOH . 
C 3 HOH A 87 387 316 HOH HOH . 
C 3 HOH A 88 388 427 HOH HOH . 
C 3 HOH A 89 389 351 HOH HOH . 
C 3 HOH A 90 390 519 HOH HOH . 
C 3 HOH A 91 391 444 HOH HOH . 
C 3 HOH A 92 392 354 HOH HOH . 
C 3 HOH A 93 393 311 HOH HOH . 
C 3 HOH A 94 394 438 HOH HOH . 
C 3 HOH A 95 395 389 HOH HOH . 
C 3 HOH A 96 396 380 HOH HOH . 
C 3 HOH A 97 397 344 HOH HOH . 
C 3 HOH A 98 398 379 HOH HOH . 
C 3 HOH A 99 399 337 HOH HOH . 
C 3 HOH A 100 400 469 HOH HOH . 
C 3 HOH A 101 401 420 HOH HOH . 
C 3 HOH A 102 402 434 HOH HOH . 
C 3 HOH A 103 403 376 HOH HOH . 
C 3 HOH A 104 404 423 HOH HOH . 
C 3 HOH A 105 405 489 HOH HOH . 
C 3 HOH A 106 406 419 HOH HOH . 
C 3 HOH A 107 407 348 HOH HOH . 
C 3 HOH A 108 408 308 HOH HOH . 
C 3 HOH A 109 409 361 HOH HOH . 
C 3 HOH A 110 410 516 HOH HOH . 
C 3 HOH A 111 411 303 HOH HOH . 
C 3 HOH A 112 412 360 HOH HOH . 
C 3 HOH A 113 413 408 HOH HOH . 
C 3 HOH A 114 414 358 HOH HOH . 
C 3 HOH A 115 415 480 HOH HOH . 
C 3 HOH A 116 416 397 HOH HOH . 
C 3 HOH A 117 417 432 HOH HOH . 
C 3 HOH A 118 418 368 HOH HOH . 
C 3 HOH A 119 419 375 HOH HOH . 
C 3 HOH A 120 420 403 HOH HOH . 
C 3 HOH A 121 421 398 HOH HOH . 
C 3 HOH A 122 422 357 HOH HOH . 
C 3 HOH A 123 423 391 HOH HOH . 
C 3 HOH A 124 424 417 HOH HOH . 
C 3 HOH A 125 425 437 HOH HOH . 
C 3 HOH A 126 426 326 HOH HOH . 
C 3 HOH A 127 427 329 HOH HOH . 
C 3 HOH A 128 428 416 HOH HOH . 
C 3 HOH A 129 429 321 HOH HOH . 
C 3 HOH A 130 430 325 HOH HOH . 
C 3 HOH A 131 431 320 HOH HOH . 
C 3 HOH A 132 432 331 HOH HOH . 
C 3 HOH A 133 433 301 HOH HOH . 
C 3 HOH A 134 434 512 HOH HOH . 
C 3 HOH A 135 435 319 HOH HOH . 
C 3 HOH A 136 436 330 HOH HOH . 
C 3 HOH A 137 437 384 HOH HOH . 
C 3 HOH A 138 438 482 HOH HOH . 
C 3 HOH A 139 439 484 HOH HOH . 
C 3 HOH A 140 440 367 HOH HOH . 
C 3 HOH A 141 441 355 HOH HOH . 
C 3 HOH A 142 442 364 HOH HOH . 
C 3 HOH A 143 443 506 HOH HOH . 
C 3 HOH A 144 444 429 HOH HOH . 
C 3 HOH A 145 445 472 HOH HOH . 
C 3 HOH A 146 446 463 HOH HOH . 
C 3 HOH A 147 447 443 HOH HOH . 
C 3 HOH A 148 448 307 HOH HOH . 
C 3 HOH A 149 449 471 HOH HOH . 
C 3 HOH A 150 450 385 HOH HOH . 
C 3 HOH A 151 451 335 HOH HOH . 
C 3 HOH A 152 452 371 HOH HOH . 
C 3 HOH A 153 453 508 HOH HOH . 
C 3 HOH A 154 454 467 HOH HOH . 
C 3 HOH A 155 455 349 HOH HOH . 
C 3 HOH A 156 456 503 HOH HOH . 
C 3 HOH A 157 457 474 HOH HOH . 
C 3 HOH A 158 458 393 HOH HOH . 
C 3 HOH A 159 459 2 HOH HOH . 
C 3 HOH A 160 460 404 HOH HOH . 
C 3 HOH A 161 461 424 HOH HOH . 
C 3 HOH A 162 462 481 HOH HOH . 
C 3 HOH A 163 463 450 HOH HOH . 
C 3 HOH A 164 464 449 HOH HOH . 
C 3 HOH A 165 465 478 HOH HOH . 
C 3 HOH A 166 466 453 HOH HOH . 
C 3 HOH A 167 467 440 HOH HOH . 
C 3 HOH A 168 468 476 HOH HOH . 
C 3 HOH A 169 469 400 HOH HOH . 
C 3 HOH A 170 470 464 HOH HOH . 
C 3 HOH A 171 471 421 HOH HOH . 
C 3 HOH A 172 472 465 HOH HOH . 
C 3 HOH A 173 473 475 HOH HOH . 
C 3 HOH A 174 474 507 HOH HOH . 
C 3 HOH A 175 475 362 HOH HOH . 
C 3 HOH A 176 476 396 HOH HOH . 
C 3 HOH A 177 477 336 HOH HOH . 
C 3 HOH A 178 478 511 HOH HOH . 
C 3 HOH A 179 479 495 HOH HOH . 
C 3 HOH A 180 480 493 HOH HOH . 
C 3 HOH A 181 481 405 HOH HOH . 
C 3 HOH A 182 482 461 HOH HOH . 
C 3 HOH A 183 483 451 HOH HOH . 
C 3 HOH A 184 484 395 HOH HOH . 
C 3 HOH A 185 485 352 HOH HOH . 
C 3 HOH A 186 486 490 HOH HOH . 
C 3 HOH A 187 487 492 HOH HOH . 
C 3 HOH A 188 488 411 HOH HOH . 
C 3 HOH A 189 489 459 HOH HOH . 
C 3 HOH A 190 490 436 HOH HOH . 
C 3 HOH A 191 491 468 HOH HOH . 
C 3 HOH A 192 492 426 HOH HOH . 
C 3 HOH A 193 493 517 HOH HOH . 
C 3 HOH A 194 494 513 HOH HOH . 
C 3 HOH A 195 495 452 HOH HOH . 
C 3 HOH A 196 496 470 HOH HOH . 
C 3 HOH A 197 497 388 HOH HOH . 
C 3 HOH A 198 498 428 HOH HOH . 
C 3 HOH A 199 499 466 HOH HOH . 
C 3 HOH A 200 500 415 HOH HOH . 
C 3 HOH A 201 501 487 HOH HOH . 
C 3 HOH A 202 502 504 HOH HOH . 
C 3 HOH A 203 503 460 HOH HOH . 
C 3 HOH A 204 504 381 HOH HOH . 
C 3 HOH A 205 505 447 HOH HOH . 
C 3 HOH A 206 506 510 HOH HOH . 
C 3 HOH A 207 507 441 HOH HOH . 
C 3 HOH A 208 508 518 HOH HOH . 
C 3 HOH A 209 509 409 HOH HOH . 
C 3 HOH A 210 510 456 HOH HOH . 
C 3 HOH A 211 511 457 HOH HOH . 
C 3 HOH A 212 512 401 HOH HOH . 
C 3 HOH A 213 513 496 HOH HOH . 
C 3 HOH A 214 514 499 HOH HOH . 
C 3 HOH A 215 515 500 HOH HOH . 
C 3 HOH A 216 516 390 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -15.79 15.632 -25.837 1 37.28 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . B 2 -14.977 16.219 -26.877 1 29.61 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . B 2 -15.092 14.389 -25.219 1 34.33 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . B 2 -15.182 13.129 -26.078 1 25.44 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . B 2 -15.539 14.295 -23.751 1 29.52 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . B 2 -16.937 14.363 -23.643 1 42.94 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#