data_5Y9B
#
_model_server_result.job_id            UYQvNHJ2Bwg69wFH7beBGg 
_model_server_result.datetime_utc      '2025-01-09 03:50:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y9b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    5Y9B 
#
_exptl.entry_id    5Y9B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y9B 
_cell.length_a            60.56 
_cell.length_b            61.396 
_cell.length_c            145.81 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y9B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B N THR 1 B THR 399 1_555 E C1C DON . B DON 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? 
covale ? covale2 B OG1 THR 1 B THR 399 1_555 E C1D DON . B DON 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
metalc ? metalc1 B OE2 GLU 100 B GLU 498 1_555 C CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 B OE2 GLU 125 B GLU 523 1_555 D CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc3 C CA CA . B CA 601 1_555 H O HOH . B HOH 704 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc4 C CA CA . B CA 601 1_555 H O HOH . B HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc5 C CA CA . B CA 601 1_555 H O HOH . B HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc6 C CA CA . B CA 601 1_555 H O HOH . B HOH 761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc7 D CA CA . B CA 602 1_555 H O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc8 D CA CA . B CA 602 1_555 H O HOH . B HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc9 D CA CA . B CA 602 1_555 H O HOH . B HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc10 D CA CA . B CA 602 1_555 H O HOH . B HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc11 D CA CA . B CA 602 1_555 H O HOH . B HOH 764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5Y9B 
_atom_sites.fract_transf_matrix[1][1]    0.016513 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016288 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006858 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA B 1 601 581 CA CA . 
D 3 CA B 1 602 582 CA CA . 
E 4 DON B 1 603 583 DON DNX . 
F 5 EDO B 1 604 584 EDO EDO . 
G 6 HOH A 1 501 445 HOH HOH . 
G 6 HOH A 2 502 430 HOH HOH . 
G 6 HOH A 3 503 418 HOH HOH . 
G 6 HOH A 4 504 446 HOH HOH . 
G 6 HOH A 5 505 434 HOH HOH . 
G 6 HOH A 6 506 412 HOH HOH . 
G 6 HOH A 7 507 401 HOH HOH . 
G 6 HOH A 8 508 460 HOH HOH . 
G 6 HOH A 9 509 411 HOH HOH . 
G 6 HOH A 10 510 400 HOH HOH . 
G 6 HOH A 11 511 424 HOH HOH . 
G 6 HOH A 12 512 410 HOH HOH . 
G 6 HOH A 13 513 423 HOH HOH . 
G 6 HOH A 14 514 404 HOH HOH . 
G 6 HOH A 15 515 437 HOH HOH . 
G 6 HOH A 16 516 439 HOH HOH . 
G 6 HOH A 17 517 406 HOH HOH . 
G 6 HOH A 18 518 421 HOH HOH . 
G 6 HOH A 19 519 456 HOH HOH . 
G 6 HOH A 20 520 408 HOH HOH . 
G 6 HOH A 21 521 457 HOH HOH . 
G 6 HOH A 22 522 396 HOH HOH . 
G 6 HOH A 23 523 448 HOH HOH . 
G 6 HOH A 24 524 442 HOH HOH . 
G 6 HOH A 25 525 429 HOH HOH . 
G 6 HOH A 26 526 407 HOH HOH . 
G 6 HOH A 27 527 435 HOH HOH . 
G 6 HOH A 28 528 447 HOH HOH . 
G 6 HOH A 29 529 450 HOH HOH . 
G 6 HOH A 30 530 428 HOH HOH . 
G 6 HOH A 31 531 420 HOH HOH . 
G 6 HOH A 32 532 463 HOH HOH . 
G 6 HOH A 33 533 431 HOH HOH . 
G 6 HOH A 34 534 464 HOH HOH . 
G 6 HOH A 35 535 419 HOH HOH . 
G 6 HOH A 36 536 444 HOH HOH . 
G 6 HOH A 37 537 438 HOH HOH . 
G 6 HOH A 38 538 427 HOH HOH . 
G 6 HOH A 39 539 459 HOH HOH . 
G 6 HOH A 40 540 440 HOH HOH . 
G 6 HOH A 41 541 432 HOH HOH . 
G 6 HOH A 42 542 415 HOH HOH . 
G 6 HOH A 43 543 641 HOH HOH . 
G 6 HOH A 44 544 402 HOH HOH . 
G 6 HOH A 45 545 426 HOH HOH . 
G 6 HOH A 46 546 397 HOH HOH . 
G 6 HOH A 47 547 398 HOH HOH . 
G 6 HOH A 48 548 417 HOH HOH . 
G 6 HOH A 49 549 422 HOH HOH . 
G 6 HOH A 50 550 425 HOH HOH . 
G 6 HOH A 51 551 455 HOH HOH . 
G 6 HOH A 52 552 453 HOH HOH . 
G 6 HOH A 53 553 441 HOH HOH . 
G 6 HOH A 54 554 409 HOH HOH . 
G 6 HOH A 55 555 413 HOH HOH . 
G 6 HOH A 56 556 403 HOH HOH . 
G 6 HOH A 57 557 414 HOH HOH . 
G 6 HOH A 58 558 395 HOH HOH . 
G 6 HOH A 59 559 399 HOH HOH . 
G 6 HOH A 60 560 433 HOH HOH . 
G 6 HOH A 61 561 449 HOH HOH . 
G 6 HOH A 62 562 436 HOH HOH . 
G 6 HOH A 63 563 454 HOH HOH . 
G 6 HOH A 64 564 458 HOH HOH . 
G 6 HOH A 65 565 462 HOH HOH . 
G 6 HOH A 66 566 461 HOH HOH . 
G 6 HOH A 67 567 451 HOH HOH . 
G 6 HOH A 68 568 416 HOH HOH . 
G 6 HOH A 69 569 405 HOH HOH . 
H 6 HOH B 1 701 608 HOH HOH . 
H 6 HOH B 2 702 593 HOH HOH . 
H 6 HOH B 3 703 589 HOH HOH . 
H 6 HOH B 4 704 585 HOH HOH . 
H 6 HOH B 5 705 635 HOH HOH . 
H 6 HOH B 6 706 606 HOH HOH . 
H 6 HOH B 7 707 595 HOH HOH . 
H 6 HOH B 8 708 645 HOH HOH . 
H 6 HOH B 9 709 443 HOH HOH . 
H 6 HOH B 10 710 633 HOH HOH . 
H 6 HOH B 11 711 615 HOH HOH . 
H 6 HOH B 12 712 591 HOH HOH . 
H 6 HOH B 13 713 590 HOH HOH . 
H 6 HOH B 14 714 655 HOH HOH . 
H 6 HOH B 15 715 599 HOH HOH . 
H 6 HOH B 16 716 611 HOH HOH . 
H 6 HOH B 17 717 619 HOH HOH . 
H 6 HOH B 18 718 609 HOH HOH . 
H 6 HOH B 19 719 616 HOH HOH . 
H 6 HOH B 20 720 624 HOH HOH . 
H 6 HOH B 21 721 618 HOH HOH . 
H 6 HOH B 22 722 598 HOH HOH . 
H 6 HOH B 23 723 644 HOH HOH . 
H 6 HOH B 24 724 649 HOH HOH . 
H 6 HOH B 25 725 648 HOH HOH . 
H 6 HOH B 26 726 623 HOH HOH . 
H 6 HOH B 27 727 597 HOH HOH . 
H 6 HOH B 28 728 642 HOH HOH . 
H 6 HOH B 29 729 586 HOH HOH . 
H 6 HOH B 30 730 657 HOH HOH . 
H 6 HOH B 31 731 610 HOH HOH . 
H 6 HOH B 32 732 640 HOH HOH . 
H 6 HOH B 33 733 605 HOH HOH . 
H 6 HOH B 34 734 588 HOH HOH . 
H 6 HOH B 35 735 602 HOH HOH . 
H 6 HOH B 36 736 654 HOH HOH . 
H 6 HOH B 37 737 592 HOH HOH . 
H 6 HOH B 38 738 628 HOH HOH . 
H 6 HOH B 39 739 603 HOH HOH . 
H 6 HOH B 40 740 452 HOH HOH . 
H 6 HOH B 41 741 627 HOH HOH . 
H 6 HOH B 42 742 656 HOH HOH . 
H 6 HOH B 43 743 612 HOH HOH . 
H 6 HOH B 44 744 594 HOH HOH . 
H 6 HOH B 45 745 622 HOH HOH . 
H 6 HOH B 46 746 600 HOH HOH . 
H 6 HOH B 47 747 587 HOH HOH . 
H 6 HOH B 48 748 637 HOH HOH . 
H 6 HOH B 49 749 630 HOH HOH . 
H 6 HOH B 50 750 626 HOH HOH . 
H 6 HOH B 51 751 629 HOH HOH . 
H 6 HOH B 52 752 638 HOH HOH . 
H 6 HOH B 53 753 651 HOH HOH . 
H 6 HOH B 54 754 625 HOH HOH . 
H 6 HOH B 55 755 604 HOH HOH . 
H 6 HOH B 56 756 620 HOH HOH . 
H 6 HOH B 57 757 621 HOH HOH . 
H 6 HOH B 58 758 650 HOH HOH . 
H 6 HOH B 59 759 636 HOH HOH . 
H 6 HOH B 60 760 601 HOH HOH . 
H 6 HOH B 61 761 596 HOH HOH . 
H 6 HOH B 62 762 646 HOH HOH . 
H 6 HOH B 63 763 632 HOH HOH . 
H 6 HOH B 64 764 617 HOH HOH . 
H 6 HOH B 65 765 653 HOH HOH . 
H 6 HOH B 66 766 613 HOH HOH . 
H 6 HOH B 67 767 614 HOH HOH . 
H 6 HOH B 68 768 631 HOH HOH . 
H 6 HOH B 69 769 647 HOH HOH . 
H 6 HOH B 70 770 643 HOH HOH . 
H 6 HOH B 71 771 658 HOH HOH . 
H 6 HOH B 72 772 634 HOH HOH . 
H 6 HOH B 73 773 639 HOH HOH . 
H 6 HOH B 74 774 607 HOH HOH . 
H 6 HOH B 75 775 659 HOH HOH . 
H 6 HOH B 76 776 652 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               9.125 
_atom_site.Cartn_y               2.422 
_atom_site.Cartn_z               -2.826 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.97 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#