data_5Y9T # _model_server_result.job_id u0oM9bFRkqanarQdg6JR3Q _model_server_result.datetime_utc '2024-11-26 15:40:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5Y9T # _exptl.entry_id 5Y9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 562.706 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-ethyl-3-[[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]amino]-5-[(3R)-1-prop-2-enoylpyrrolidin-3-yl]oxy-pyrazin e-2-carboxamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y9T _cell.length_a 144.64 _cell.length_b 144.64 _cell.length_c 144.64 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C41 _struct_conn.ptnr2_label_comp_id 8RC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 8RC _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.831 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H42 N8 O3' _chem_comp.formula_weight 562.706 _chem_comp.id 8RC _chem_comp.mon_nstd_flag . _chem_comp.name '6-ethyl-3-[[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]amino]-5-[(3R)-1-prop-2-enoylpyrrolidin-3-yl]oxy-pyrazin e-2-carboxamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Naquotinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C9 8RC sing 1 n n C9 C5 8RC sing 2 n n C5 N6 8RC doub 3 n y C5 C4 8RC sing 4 n y N6 C1 8RC sing 5 n y N31 C29 8RC sing 6 n n O8 C4 8RC sing 7 n n O8 C33 8RC sing 8 n n C4 N3 8RC doub 9 n y C1 C29 8RC sing 10 n n C1 C2 8RC doub 11 n y C29 O30 8RC doub 12 n n C37 C33 8RC sing 13 n n C37 C36 8RC sing 14 n n O39 C38 8RC doub 15 n n C33 C34 8RC sing 16 n n C36 N35 8RC sing 17 n n N3 C2 8RC sing 18 n y C34 N35 8RC sing 19 n n C2 N7 8RC sing 20 n n N35 C38 8RC sing 21 n n C38 C40 8RC sing 22 n n N7 C10 8RC sing 23 n n C40 C41 8RC doub 24 n n C10 C11 8RC doub 25 n y C10 C15 8RC sing 26 n y C11 C12 8RC sing 27 n y C15 C14 8RC doub 28 n y C12 C13 8RC doub 29 n y C14 C13 8RC sing 30 n y C13 N16 8RC sing 31 n n N16 C17 8RC sing 32 n n N16 C21 8RC sing 33 n n C17 C18 8RC sing 34 n n C21 C20 8RC sing 35 n n C18 C19 8RC sing 36 n n C20 C19 8RC sing 37 n n C19 N22 8RC sing 38 n n N22 C27 8RC sing 39 n n N22 C23 8RC sing 40 n n C27 C26 8RC sing 41 n n C23 C24 8RC sing 42 n n C26 N25 8RC sing 43 n n N25 C24 8RC sing 44 n n N25 C28 8RC sing 45 n n C12 H1 8RC sing 46 n n C14 H2 8RC sing 47 n n C11 H3 8RC sing 48 n n C15 H4 8RC sing 49 n n C18 H5 8RC sing 50 n n C18 H6 8RC sing 51 n n C20 H7 8RC sing 52 n n C20 H8 8RC sing 53 n n C37 H9 8RC sing 54 n n C37 H10 8RC sing 55 n n C17 H11 8RC sing 56 n n C17 H12 8RC sing 57 n n C21 H13 8RC sing 58 n n C21 H14 8RC sing 59 n n C36 H15 8RC sing 60 n n C36 H16 8RC sing 61 n n C23 H17 8RC sing 62 n n C23 H18 8RC sing 63 n n C27 H19 8RC sing 64 n n C27 H20 8RC sing 65 n n C24 H21 8RC sing 66 n n C24 H22 8RC sing 67 n n C26 H23 8RC sing 68 n n C26 H24 8RC sing 69 n n C34 H25 8RC sing 70 n n C34 H26 8RC sing 71 n n C19 H27 8RC sing 72 n n C33 H28 8RC sing 73 n n C32 H29 8RC sing 74 n n C32 H30 8RC sing 75 n n C32 H31 8RC sing 76 n n C41 H32 8RC sing 77 n n C41 H33 8RC sing 78 n n C28 H35 8RC sing 79 n n C28 H36 8RC sing 80 n n C28 H37 8RC sing 81 n n C9 H38 8RC sing 82 n n C9 H39 8RC sing 83 n n C40 H40 8RC sing 84 n n N31 H44 8RC sing 85 n n N31 H45 8RC sing 86 n n N7 H46 8RC sing 87 n n # _atom_sites.entry_id 5Y9T _atom_sites.fract_transf_matrix[1][1] 0.006914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 8RC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 8RC _pdbx_nonpoly_scheme.auth_mon_id UNL _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 8RC . . . B 2 0.103 49.541 -16.91 1 64.87 ? C12 8RC 1101 A 1 HETATM 2 C C14 8RC . . . B 2 1.737 51.055 -16.181 1 66.14 ? C14 8RC 1101 A 1 HETATM 3 C C11 8RC . . . B 2 0.302 49.971 -18.21 1 61.73 ? C11 8RC 1101 A 1 HETATM 4 C C15 8RC . . . B 2 1.947 51.501 -17.469 1 58.59 ? C15 8RC 1101 A 1 HETATM 5 C C13 8RC . . . B 2 0.815 50.07 -15.851 1 65.64 ? C13 8RC 1101 A 1 HETATM 6 C C10 8RC . . . B 2 1.225 50.954 -18.505 1 61.15 ? C10 8RC 1101 A 1 HETATM 7 C C1 8RC . . . B 2 1.215 51.789 -22.181 1 55.05 ? C1 8RC 1101 A 1 HETATM 8 C C5 8RC . . . B 2 0.039 50.411 -23.502 1 62.42 ? C5 8RC 1101 A 1 HETATM 9 C C2 8RC . . . B 2 0.958 51.016 -21.051 1 60.29 ? C2 8RC 1101 A 1 HETATM 10 C C4 8RC . . . B 2 -0.217 49.61 -22.397 1 69.01 ? C4 8RC 1101 A 1 HETATM 11 C C29 8RC . . . B 2 1.986 53.026 -22.047 1 50.88 ? C29 8RC 1101 A 1 HETATM 12 C C38 8RC . . . B 2 -5.136 48.217 -20.612 1 104.68 ? C38 8RC 1101 A 1 HETATM 13 C C18 8RC . . . B 2 -0.791 48.561 -12.865 1 69.13 ? C18 8RC 1101 A 1 HETATM 14 C C20 8RC . . . B 2 1.183 49.99 -12.199 1 68.42 ? C20 8RC 1101 A 1 HETATM 15 C C37 8RC . . . B 2 -1.998 46.55 -21.686 1 81.47 ? C37 8RC 1101 A 1 HETATM 16 C C17 8RC . . . B 2 -0.728 49.179 -14.25 1 58.71 ? C17 8RC 1101 A 1 HETATM 17 C C21 8RC . . . B 2 1.057 50.633 -13.557 1 64.74 ? C21 8RC 1101 A 1 HETATM 18 C C36 8RC . . . B 2 -3.486 46.531 -21.39 1 95.35 ? C36 8RC 1101 A 1 HETATM 19 C C23 8RC . . . B 2 -1.122 49.058 -9.449 1 81.5 ? C23 8RC 1101 A 1 HETATM 20 C C27 8RC . . . B 2 0.617 47.442 -10.425 1 87.58 ? C27 8RC 1101 A 1 HETATM 21 C C24 8RC . . . B 2 -0.643 48.711 -8.05 1 82.2 ? C24 8RC 1101 A 1 HETATM 22 C C26 8RC . . . B 2 1.272 47.323 -9.076 1 92.26 ? C26 8RC 1101 A 1 HETATM 23 C C34 8RC . . . B 2 -2.808 48.778 -21.143 1 96.61 ? C34 8RC 1101 A 1 HETATM 24 C C19 8RC . . . B 2 -0.171 49.458 -11.786 1 75.01 ? C19 8RC 1101 A 1 HETATM 25 C C33 8RC . . . B 2 -1.556 47.964 -21.42 1 82.81 ? C33 8RC 1101 A 1 HETATM 26 C C32 8RC . . . B 2 0.496 49.269 -25.646 1 60.59 ? C32 8RC 1101 A 1 HETATM 27 C C41 8RC . . . B 2 -6.785 49.211 -19.086 1 76.66 ? C41 8RC 1101 A 1 HETATM 28 C C28 8RC . . . B 2 0.676 46.964 -6.769 1 87.28 ? C28 8RC 1101 A 1 HETATM 29 C C9 8RC . . . B 2 -0.496 50.071 -24.85 1 58.47 ? C9 8RC 1101 A 1 HETATM 30 C C40 8RC . . . B 2 -5.498 48.402 -19.164 1 84.57 ? C40 8RC 1101 A 1 HETATM 31 N N6 8RC . . . B 2 0.774 51.526 -23.414 1 55.79 ? N6 8RC 1101 A 1 HETATM 32 N N3 8RC . . . B 2 0.237 49.891 -21.159 1 61.83 ? N3 8RC 1101 A 1 HETATM 33 N N16 8RC . . . B 2 0.624 49.62 -14.508 1 59.4 ? N16 8RC 1101 A 1 HETATM 34 N N35 8RC . . . B 2 -3.824 47.821 -20.826 1 105.61 ? N35 8RC 1101 A 1 HETATM 35 N N22 8RC . . . B 2 -0.019 48.8 -10.445 1 82.49 ? N22 8RC 1101 A 1 HETATM 36 N N25 8RC . . . B 2 0.155 47.423 -8.084 1 93.59 ? N25 8RC 1101 A 1 HETATM 37 N N31 8RC . . . B 2 2.171 53.779 -23.15 1 50.59 ? N31 8RC 1101 A 1 HETATM 38 N N7 8RC . . . B 2 1.484 51.436 -19.803 1 62.44 ? N7 8RC 1101 A 1 HETATM 39 O O30 8RC . . . B 2 2.392 53.393 -20.966 1 53.89 ? O30 8RC 1101 A 1 HETATM 40 O O39 8RC . . . B 2 -5.946 48.396 -21.515 1 120.08 ? O39 8RC 1101 A 1 HETATM 41 O O8 8RC . . . B 2 -0.977 48.455 -22.612 1 75.86 ? O8 8RC 1101 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #