data_5YA0 # _model_server_result.job_id jnmjcyoMD-rUZGCpY6mAiQ _model_server_result.datetime_utc '2024-10-19 22:42:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ya0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":101}' # _entry.id 5YA0 # _exptl.entry_id 5YA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YA0 _cell.length_a 101.156 _cell.length_b 101.156 _cell.length_c 344.323 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,M,O 1 1 B,D,G,H,K,L,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 281 n n P O2 PO4 sing 282 n n P O3 PO4 sing 283 n n P O4 PO4 sing 284 n n # _atom_sites.entry_id 5YA0 _atom_sites.fract_transf_matrix[1][1] 0.009886 _atom_sites.fract_transf_matrix[1][2] 0.005708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEZ A 1 801 801 HEZ HEZ . F 4 PO4 A 1 802 2 PO4 PO4 . G 3 HEZ B 1 601 802 HEZ HEZ . H 4 PO4 B 1 602 1 PO4 PO4 . I 4 PO4 C 1 101 4 PO4 PO4 . J 4 PO4 C 1 102 5 PO4 PO4 . K 4 PO4 D 1 101 3 PO4 PO4 . L 4 PO4 D 1 102 6 PO4 PO4 . M 5 HOH A 1 901 26 HOH HOH . M 5 HOH A 2 902 21 HOH HOH . M 5 HOH A 3 903 23 HOH HOH . M 5 HOH A 4 904 7 HOH HOH . M 5 HOH A 5 905 35 HOH HOH . M 5 HOH A 6 906 6 HOH HOH . M 5 HOH A 7 907 2 HOH HOH . M 5 HOH A 8 908 20 HOH HOH . M 5 HOH A 9 909 37 HOH HOH . M 5 HOH A 10 910 18 HOH HOH . M 5 HOH A 11 911 4 HOH HOH . M 5 HOH A 12 912 14 HOH HOH . M 5 HOH A 13 913 29 HOH HOH . M 5 HOH A 14 914 34 HOH HOH . M 5 HOH A 15 915 24 HOH HOH . N 5 HOH B 1 701 8 HOH HOH . N 5 HOH B 2 702 22 HOH HOH . N 5 HOH B 3 703 25 HOH HOH . N 5 HOH B 4 704 1 HOH HOH . N 5 HOH B 5 705 10 HOH HOH . N 5 HOH B 6 706 17 HOH HOH . N 5 HOH B 7 707 30 HOH HOH . N 5 HOH B 8 708 36 HOH HOH . N 5 HOH B 9 709 3 HOH HOH . N 5 HOH B 10 710 11 HOH HOH . N 5 HOH B 11 711 19 HOH HOH . N 5 HOH B 12 712 33 HOH HOH . O 5 HOH C 1 201 15 HOH HOH . O 5 HOH C 2 202 12 HOH HOH . O 5 HOH C 3 203 9 HOH HOH . P 5 HOH D 1 201 16 HOH HOH . P 5 HOH D 2 202 13 HOH HOH . P 5 HOH D 3 203 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 4 61.133 31.463 48.832 1 170.98 ? P PO4 101 C 1 HETATM 2 O O1 PO4 . . . I 4 60.969 32.62 49.787 1 173.42 ? O1 PO4 101 C 1 HETATM 3 O O2 PO4 . . . I 4 61.946 30.375 49.493 1 167.36 ? O2 PO4 101 C 1 HETATM 4 O O3 PO4 . . . I 4 59.773 30.92 48.461 1 173.59 ? O3 PO4 101 C 1 HETATM 5 O O4 PO4 . . . I 4 61.844 31.936 47.587 1 178.93 ? O4 PO4 101 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #