data_5YA0
#
_model_server_result.job_id            aWzDrLOa7i6ziINZ2obTHw 
_model_server_result.datetime_utc      '2024-10-19 22:32:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ya0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    5YA0 
#
_exptl.entry_id    5YA0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEXANE-1,6-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YA0 
_cell.length_a            101.156 
_cell.length_b            101.156 
_cell.length_c            344.323 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J,M,O 1 1 
B,D,G,H,K,L,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                HEZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEXANE-1,6-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 HEZ sing 129 n n 
O1 HO1 HEZ sing 130 n n 
C1 C2 HEZ sing 131 n n 
C1 H11 HEZ sing 132 n n 
C1 H12 HEZ sing 133 n n 
C2 C3 HEZ sing 134 n n 
C2 H21 HEZ sing 135 n n 
C2 H22 HEZ sing 136 n n 
C3 C4 HEZ sing 137 n n 
C3 H31 HEZ sing 138 n n 
C3 H32 HEZ sing 139 n n 
C4 C5 HEZ sing 140 n n 
C4 H41 HEZ sing 141 n n 
C4 H42 HEZ sing 142 n n 
C5 C6 HEZ sing 143 n n 
C5 H51 HEZ sing 144 n n 
C5 H52 HEZ sing 145 n n 
C6 O6 HEZ sing 146 n n 
C6 H61 HEZ sing 147 n n 
C6 H62 HEZ sing 148 n n 
O6 HO6 HEZ sing 149 n n 
#
_atom_sites.entry_id                     5YA0 
_atom_sites.fract_transf_matrix[1][1]    0.009886 
_atom_sites.fract_transf_matrix[1][2]    0.005708 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011415 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002904 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEZ A 1 801 801 HEZ HEZ . 
F 4 PO4 A 1 802 2 PO4 PO4 . 
G 3 HEZ B 1 601 802 HEZ HEZ . 
H 4 PO4 B 1 602 1 PO4 PO4 . 
I 4 PO4 C 1 101 4 PO4 PO4 . 
J 4 PO4 C 1 102 5 PO4 PO4 . 
K 4 PO4 D 1 101 3 PO4 PO4 . 
L 4 PO4 D 1 102 6 PO4 PO4 . 
M 5 HOH A 1 901 26 HOH HOH . 
M 5 HOH A 2 902 21 HOH HOH . 
M 5 HOH A 3 903 23 HOH HOH . 
M 5 HOH A 4 904 7 HOH HOH . 
M 5 HOH A 5 905 35 HOH HOH . 
M 5 HOH A 6 906 6 HOH HOH . 
M 5 HOH A 7 907 2 HOH HOH . 
M 5 HOH A 8 908 20 HOH HOH . 
M 5 HOH A 9 909 37 HOH HOH . 
M 5 HOH A 10 910 18 HOH HOH . 
M 5 HOH A 11 911 4 HOH HOH . 
M 5 HOH A 12 912 14 HOH HOH . 
M 5 HOH A 13 913 29 HOH HOH . 
M 5 HOH A 14 914 34 HOH HOH . 
M 5 HOH A 15 915 24 HOH HOH . 
N 5 HOH B 1 701 8 HOH HOH . 
N 5 HOH B 2 702 22 HOH HOH . 
N 5 HOH B 3 703 25 HOH HOH . 
N 5 HOH B 4 704 1 HOH HOH . 
N 5 HOH B 5 705 10 HOH HOH . 
N 5 HOH B 6 706 17 HOH HOH . 
N 5 HOH B 7 707 30 HOH HOH . 
N 5 HOH B 8 708 36 HOH HOH . 
N 5 HOH B 9 709 3 HOH HOH . 
N 5 HOH B 10 710 11 HOH HOH . 
N 5 HOH B 11 711 19 HOH HOH . 
N 5 HOH B 12 712 33 HOH HOH . 
O 5 HOH C 1 201 15 HOH HOH . 
O 5 HOH C 2 202 12 HOH HOH . 
O 5 HOH C 3 203 9 HOH HOH . 
P 5 HOH D 1 201 16 HOH HOH . 
P 5 HOH D 2 202 13 HOH HOH . 
P 5 HOH D 3 203 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 HEZ . . . G 3 44.621 -7.677 36.895 1 80.46 ? O1 HEZ 601 B 1 
HETATM 2 C C1 HEZ . . . G 3 43.733 -8.478 37.682 1 78.81 ? C1 HEZ 601 B 1 
HETATM 3 C C2 HEZ . . . G 3 44.132 -9.951 37.561 1 70.06 ? C2 HEZ 601 B 1 
HETATM 4 C C3 HEZ . . . G 3 43.172 -10.817 38.38 1 69.91 ? C3 HEZ 601 B 1 
HETATM 5 C C4 HEZ . . . G 3 41.868 -11.023 37.607 1 61.05 ? C4 HEZ 601 B 1 
HETATM 6 C C5 HEZ . . . G 3 41.262 -12.379 37.983 1 71.91 ? C5 HEZ 601 B 1 
HETATM 7 C C6 HEZ . . . G 3 40.794 -12.358 39.441 1 87.45 ? C6 HEZ 601 B 1 
HETATM 8 O O6 HEZ . . . G 3 39.504 -11.744 39.525 1 87.41 ? O6 HEZ 601 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#