data_5YA1
#
_model_server_result.job_id            oDRms9QKn5YTXrPfoctusQ 
_model_server_result.datetime_utc      '2024-10-28 02:24:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ya1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":702}' 
#
_entry.id    5YA1 
#
_exptl.entry_id    5YA1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEXANE-1,6-DIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YA1 
_cell.length_a            101.016 
_cell.length_b            101.016 
_cell.length_c            344.453 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YA1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,Q,S,U 1 1 
B,D,L,M,N,O,P,R,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 M N N 
? 4 N N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                HEZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEXANE-1,6-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 HEZ sing 178 n n 
O1 HO1 HEZ sing 179 n n 
C1 C2 HEZ sing 180 n n 
C1 H11 HEZ sing 181 n n 
C1 H12 HEZ sing 182 n n 
C2 C3 HEZ sing 183 n n 
C2 H21 HEZ sing 184 n n 
C2 H22 HEZ sing 185 n n 
C3 C4 HEZ sing 186 n n 
C3 H31 HEZ sing 187 n n 
C3 H32 HEZ sing 188 n n 
C4 C5 HEZ sing 189 n n 
C4 H41 HEZ sing 190 n n 
C4 H42 HEZ sing 191 n n 
C5 C6 HEZ sing 192 n n 
C5 H51 HEZ sing 193 n n 
C5 H52 HEZ sing 194 n n 
C6 O6 HEZ sing 195 n n 
C6 H61 HEZ sing 196 n n 
C6 H62 HEZ sing 197 n n 
O6 HO6 HEZ sing 198 n n 
#
_atom_sites.entry_id                     5YA1 
_atom_sites.fract_transf_matrix[1][1]    0.009899 
_atom_sites.fract_transf_matrix[1][2]    0.005715 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ATP A 1 701 701 ATP ATP . 
F 4 HEZ A 1 702 802 HEZ HEZ . 
G 4 HEZ A 1 703 803 HEZ HEZ . 
H 5 PO4 A 1 704 1 PO4 PO4 . 
I 5 PO4 A 1 705 2 PO4 PO4 . 
J 5 PO4 A 1 706 4 PO4 PO4 . 
K 5 PO4 A 1 707 8 PO4 PO4 . 
L 3 ATP B 1 601 702 ATP ATP . 
M 4 HEZ B 1 602 801 HEZ HEZ . 
N 4 HEZ B 1 603 804 HEZ HEZ . 
O 5 PO4 B 1 604 3 PO4 PO4 . 
P 5 PO4 B 1 605 7 PO4 PO4 . 
Q 5 PO4 C 1 101 6 PO4 PO4 . 
R 5 PO4 D 1 101 5 PO4 PO4 . 
S 6 HOH A 1 801 11 HOH HOH . 
S 6 HOH A 2 802 7 HOH HOH . 
S 6 HOH A 3 803 27 HOH HOH . 
S 6 HOH A 4 804 21 HOH HOH . 
S 6 HOH A 5 805 20 HOH HOH . 
S 6 HOH A 6 806 69 HOH HOH . 
S 6 HOH A 7 807 34 HOH HOH . 
S 6 HOH A 8 808 25 HOH HOH . 
S 6 HOH A 9 809 35 HOH HOH . 
S 6 HOH A 10 810 13 HOH HOH . 
S 6 HOH A 11 811 57 HOH HOH . 
S 6 HOH A 12 812 48 HOH HOH . 
S 6 HOH A 13 813 2 HOH HOH . 
S 6 HOH A 14 814 38 HOH HOH . 
S 6 HOH A 15 815 70 HOH HOH . 
S 6 HOH A 16 816 65 HOH HOH . 
S 6 HOH A 17 817 29 HOH HOH . 
S 6 HOH A 18 818 36 HOH HOH . 
S 6 HOH A 19 819 43 HOH HOH . 
S 6 HOH A 20 820 63 HOH HOH . 
S 6 HOH A 21 821 51 HOH HOH . 
S 6 HOH A 22 822 60 HOH HOH . 
S 6 HOH A 23 823 4 HOH HOH . 
S 6 HOH A 24 824 44 HOH HOH . 
S 6 HOH A 25 825 32 HOH HOH . 
S 6 HOH A 26 826 53 HOH HOH . 
S 6 HOH A 27 827 10 HOH HOH . 
S 6 HOH A 28 828 64 HOH HOH . 
S 6 HOH A 29 829 18 HOH HOH . 
S 6 HOH A 30 830 71 HOH HOH . 
S 6 HOH A 31 831 41 HOH HOH . 
S 6 HOH A 32 832 56 HOH HOH . 
T 6 HOH B 1 701 22 HOH HOH . 
T 6 HOH B 2 702 19 HOH HOH . 
T 6 HOH B 3 703 28 HOH HOH . 
T 6 HOH B 4 704 68 HOH HOH . 
T 6 HOH B 5 705 39 HOH HOH . 
T 6 HOH B 6 706 14 HOH HOH . 
T 6 HOH B 7 707 33 HOH HOH . 
T 6 HOH B 8 708 31 HOH HOH . 
T 6 HOH B 9 709 1 HOH HOH . 
T 6 HOH B 10 710 26 HOH HOH . 
T 6 HOH B 11 711 6 HOH HOH . 
T 6 HOH B 12 712 58 HOH HOH . 
T 6 HOH B 13 713 59 HOH HOH . 
T 6 HOH B 14 714 67 HOH HOH . 
T 6 HOH B 15 715 49 HOH HOH . 
T 6 HOH B 16 716 52 HOH HOH . 
T 6 HOH B 17 717 12 HOH HOH . 
T 6 HOH B 18 718 46 HOH HOH . 
T 6 HOH B 19 719 16 HOH HOH . 
T 6 HOH B 20 720 66 HOH HOH . 
T 6 HOH B 21 721 30 HOH HOH . 
T 6 HOH B 22 722 37 HOH HOH . 
T 6 HOH B 23 723 5 HOH HOH . 
T 6 HOH B 24 724 3 HOH HOH . 
T 6 HOH B 25 725 45 HOH HOH . 
T 6 HOH B 26 726 42 HOH HOH . 
T 6 HOH B 27 727 15 HOH HOH . 
T 6 HOH B 28 728 17 HOH HOH . 
T 6 HOH B 29 729 50 HOH HOH . 
T 6 HOH B 30 730 47 HOH HOH . 
T 6 HOH B 31 731 40 HOH HOH . 
T 6 HOH B 32 732 61 HOH HOH . 
U 6 HOH C 1 201 9 HOH HOH . 
U 6 HOH C 2 202 54 HOH HOH . 
U 6 HOH C 3 203 24 HOH HOH . 
V 6 HOH D 1 201 62 HOH HOH . 
V 6 HOH D 2 202 8 HOH HOH . 
V 6 HOH D 3 203 55 HOH HOH . 
V 6 HOH D 4 204 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 HEZ . . . F 4 57.142 7.25 37.709 1 59.29 ? O1 HEZ 702 A 1 
HETATM 2 C C1 HEZ . . . F 4 56.982 8.55 37.133 1 60.56 ? C1 HEZ 702 A 1 
HETATM 3 C C2 HEZ . . . F 4 57.254 9.617 38.195 1 59.74 ? C2 HEZ 702 A 1 
HETATM 4 C C3 HEZ . . . F 4 58.623 10.255 37.947 1 61.59 ? C3 HEZ 702 A 1 
HETATM 5 C C4 HEZ . . . F 4 58.923 11.248 39.071 1 67.74 ? C4 HEZ 702 A 1 
HETATM 6 C C5 HEZ . . . F 4 59.845 12.348 38.545 1 67.17 ? C5 HEZ 702 A 1 
HETATM 7 C C6 HEZ . . . F 4 61.297 11.869 38.61 1 71.65 ? C6 HEZ 702 A 1 
HETATM 8 O O6 HEZ . . . F 4 61.762 11.91 39.964 1 70.45 ? O6 HEZ 702 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#