data_5YA2
#
_model_server_result.job_id            -n8XkrI5nJDdX_hYQ9v3TQ 
_model_server_result.datetime_utc      '2025-03-04 21:27:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ya2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":703}' 
#
_entry.id    5YA2 
#
_exptl.entry_id    5YA2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YA2 
_cell.length_a            101.251 
_cell.length_b            101.251 
_cell.length_c            344.149 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YA2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,M,O,Q 1 1 
B,D,J,K,L,N,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 325 n n 
P O2 PO4 sing 326 n n 
P O3 PO4 sing 327 n n 
P O4 PO4 sing 328 n n 
#
_atom_sites.entry_id                     5YA2 
_atom_sites.fract_transf_matrix[1][1]    0.009876 
_atom_sites.fract_transf_matrix[1][2]    0.005702 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011404 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002906 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ADP A 1 601 702 ADP ADP . 
F 4 HEZ A 1 602 802 HEZ HEZ . 
G 5 PO4 A 1 603 1 PO4 PO4 . 
H 5 PO4 A 1 604 2 PO4 PO4 . 
I 5 PO4 A 1 605 4 PO4 PO4 . 
J 3 ADP B 1 701 701 ADP ADP . 
K 4 HEZ B 1 702 801 HEZ HEZ . 
L 5 PO4 B 1 703 3 PO4 PO4 . 
M 5 PO4 C 1 101 6 PO4 PO4 . 
N 5 PO4 D 1 101 5 PO4 PO4 . 
O 6 HOH A 1 701 31 HOH HOH . 
O 6 HOH A 2 702 29 HOH HOH . 
O 6 HOH A 3 703 21 HOH HOH . 
O 6 HOH A 4 704 15 HOH HOH . 
O 6 HOH A 5 705 16 HOH HOH . 
O 6 HOH A 6 706 23 HOH HOH . 
O 6 HOH A 7 707 36 HOH HOH . 
O 6 HOH A 8 708 7 HOH HOH . 
O 6 HOH A 9 709 2 HOH HOH . 
O 6 HOH A 10 710 33 HOH HOH . 
O 6 HOH A 11 711 12 HOH HOH . 
O 6 HOH A 12 712 14 HOH HOH . 
O 6 HOH A 13 713 27 HOH HOH . 
O 6 HOH A 14 714 4 HOH HOH . 
O 6 HOH A 15 715 47 HOH HOH . 
O 6 HOH A 16 716 39 HOH HOH . 
O 6 HOH A 17 717 54 HOH HOH . 
O 6 HOH A 18 718 49 HOH HOH . 
O 6 HOH A 19 719 28 HOH HOH . 
O 6 HOH A 20 720 40 HOH HOH . 
O 6 HOH A 21 721 3 HOH HOH . 
O 6 HOH A 22 722 42 HOH HOH . 
P 6 HOH B 1 801 38 HOH HOH . 
P 6 HOH B 2 802 22 HOH HOH . 
P 6 HOH B 3 803 17 HOH HOH . 
P 6 HOH B 4 804 30 HOH HOH . 
P 6 HOH B 5 805 24 HOH HOH . 
P 6 HOH B 6 806 48 HOH HOH . 
P 6 HOH B 7 807 6 HOH HOH . 
P 6 HOH B 8 808 1 HOH HOH . 
P 6 HOH B 9 809 13 HOH HOH . 
P 6 HOH B 10 810 52 HOH HOH . 
P 6 HOH B 11 811 60 HOH HOH . 
P 6 HOH B 12 812 37 HOH HOH . 
P 6 HOH B 13 813 46 HOH HOH . 
P 6 HOH B 14 814 26 HOH HOH . 
P 6 HOH B 15 815 34 HOH HOH . 
P 6 HOH B 16 816 5 HOH HOH . 
P 6 HOH B 17 817 8 HOH HOH . 
P 6 HOH B 18 818 35 HOH HOH . 
P 6 HOH B 19 819 55 HOH HOH . 
P 6 HOH B 20 820 50 HOH HOH . 
P 6 HOH B 21 821 41 HOH HOH . 
P 6 HOH B 22 822 11 HOH HOH . 
P 6 HOH B 23 823 43 HOH HOH . 
P 6 HOH B 24 824 20 HOH HOH . 
P 6 HOH B 25 825 56 HOH HOH . 
P 6 HOH B 26 826 25 HOH HOH . 
P 6 HOH B 27 827 59 HOH HOH . 
P 6 HOH B 28 828 32 HOH HOH . 
Q 6 HOH C 1 201 45 HOH HOH . 
Q 6 HOH C 2 202 51 HOH HOH . 
Q 6 HOH C 3 203 10 HOH HOH . 
Q 6 HOH C 4 204 58 HOH HOH . 
Q 6 HOH C 5 205 19 HOH HOH . 
R 6 HOH D 1 201 9 HOH HOH . 
R 6 HOH D 2 202 44 HOH HOH . 
R 6 HOH D 3 203 18 HOH HOH . 
R 6 HOH D 4 204 53 HOH HOH . 
R 6 HOH D 5 205 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . L 5 62.665 8.079 39.4 1 122.6 ? P PO4 703 B 1 
HETATM 2 O O1 PO4 . . . L 5 63.596 7.851 38.233 1 122.56 ? O1 PO4 703 B 1 
HETATM 3 O O2 PO4 . . . L 5 61.282 7.589 39.043 1 130.74 ? O2 PO4 703 B 1 
HETATM 4 O O3 PO4 . . . L 5 62.615 9.555 39.721 1 115.34 ? O3 PO4 703 B 1 
HETATM 5 O O4 PO4 . . . L 5 63.159 7.312 40.603 1 116.39 ? O4 PO4 703 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#