data_5YAO # _model_server_result.job_id pQHXsKFNsvX7lIgqMsWVVQ _model_server_result.datetime_utc '2024-10-19 20:15:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5YAO # _exptl.entry_id 5YAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 84.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,5S)-6-oxabicyclo[3.1.0]hexane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YAO _cell.length_a 53.226 _cell.length_b 61.097 _cell.length_c 120.793 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 25 A ALA 19 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc2 A OG SER 27 A SER 21 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc3 B OG SER 27 B SER 21 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? # _chem_comp.formula 'C5 H8 O' _chem_comp.formula_weight 84.116 _chem_comp.id 3ZS _chem_comp.mon_nstd_flag . _chem_comp.name (1R,5S)-6-oxabicyclo[3.1.0]hexane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C05 3ZS sing 1 n n C01 C02 3ZS sing 2 n n C05 O06 3ZS sing 3 n n C05 C04 3ZS sing 4 n n O06 C04 3ZS sing 5 n n C02 C03 3ZS sing 6 n n C04 C03 3ZS sing 7 n n C01 H1 3ZS sing 8 n n C01 H2 3ZS sing 9 n n C02 H3 3ZS sing 10 n n C02 H4 3ZS sing 11 n n C03 H5 3ZS sing 12 n n C03 H6 3ZS sing 13 n n C04 H7 3ZS sing 14 n n C05 H8 3ZS sing 15 n n # _atom_sites.entry_id 5YAO _atom_sites.fract_transf_matrix[1][1] 0.018788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3ZS A 1 201 1 3ZS LIG . D 3 NA A 1 202 1 NA NA . E 3 NA B 1 201 2 NA NA . F 4 HOH A 1 301 55 HOH HOH . F 4 HOH A 2 302 8 HOH HOH . F 4 HOH A 3 303 24 HOH HOH . F 4 HOH A 4 304 17 HOH HOH . F 4 HOH A 5 305 12 HOH HOH . F 4 HOH A 6 306 9 HOH HOH . F 4 HOH A 7 307 6 HOH HOH . F 4 HOH A 8 308 2 HOH HOH . F 4 HOH A 9 309 13 HOH HOH . F 4 HOH A 10 310 11 HOH HOH . F 4 HOH A 11 311 5 HOH HOH . F 4 HOH A 12 312 16 HOH HOH . F 4 HOH A 13 313 23 HOH HOH . F 4 HOH A 14 314 30 HOH HOH . F 4 HOH A 15 315 56 HOH HOH . F 4 HOH A 16 316 3 HOH HOH . F 4 HOH A 17 317 28 HOH HOH . F 4 HOH A 18 318 40 HOH HOH . F 4 HOH A 19 319 53 HOH HOH . F 4 HOH A 20 320 34 HOH HOH . F 4 HOH A 21 321 54 HOH HOH . F 4 HOH A 22 322 42 HOH HOH . F 4 HOH A 23 323 44 HOH HOH . G 4 HOH B 1 301 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 3ZS . A . C 2 -2.395 19.89 -7.055 0.46 21.28 ? C01 3ZS 201 A 1 HETATM 2 C C01 3ZS . B . C 2 -2.277 19.852 -7.763 0.54 21.35 ? C01 3ZS 201 A 1 HETATM 3 C C02 3ZS . A . C 2 -1.59 19.964 -8.363 0.46 23.26 ? C02 3ZS 201 A 1 HETATM 4 C C02 3ZS . B . C 2 -2.467 18.628 -8.685 0.54 18.65 ? C02 3ZS 201 A 1 HETATM 5 C C03 3ZS . A . C 2 -0.165 19.475 -8.024 0.46 22.55 ? C03 3ZS 201 A 1 HETATM 6 C C03 3ZS . B . C 2 -1.192 18.603 -9.543 0.54 21.6 ? C03 3ZS 201 A 1 HETATM 7 C C04 3ZS . A . C 2 -0.307 18.607 -6.759 0.46 20.59 ? C04 3ZS 201 A 1 HETATM 8 C C04 3ZS . B . C 2 -0.077 19.196 -8.646 0.54 22.61 ? C04 3ZS 201 A 1 HETATM 9 C C05 3ZS . A . C 2 -1.643 18.88 -6.157 0.46 23.23 ? C05 3ZS 201 A 1 HETATM 10 C C05 3ZS . B . C 2 -0.744 19.954 -7.546 0.54 22.55 ? C05 3ZS 201 A 1 HETATM 11 O O06 3ZS . A . C 2 -0.46 19.422 -5.632 0.46 20.12 ? O06 3ZS 201 A 1 HETATM 12 O O06 3ZS . B . C 2 -0.098 20.594 -8.617 0.54 20.29 ? O06 3ZS 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #