data_5YB5 # _model_server_result.job_id HHmV1oz4cCcW58Gutk8yWw _model_server_result.datetime_utc '2024-12-26 14:09:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5YB5 # _exptl.entry_id 5YB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S)-PARA-NITROSTYRENE OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YB5 _cell.length_a 70.297 _cell.length_b 70.297 _cell.length_c 121.295 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H7 N O3' _chem_comp.formula_weight 165.146 _chem_comp.id SNO _chem_comp.mon_nstd_flag . _chem_comp.name '(S)-PARA-NITROSTYRENE OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2S)-2-(4-NITROPHENYL)OXIRANE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SNO doub 290 n y C1 C6 SNO sing 291 n y C1 N1 SNO sing 292 n n C2 C3 SNO sing 293 n y C2 H22 SNO sing 294 n n C3 C4 SNO doub 295 n y C3 H33 SNO sing 296 n n C4 C5 SNO sing 297 n y C4 C7 SNO sing 298 n n C5 C6 SNO doub 299 n y C5 H55 SNO sing 300 n n C6 H66 SNO sing 301 n n C7 C8 SNO sing 302 n n C7 O3 SNO sing 303 n n C7 H77 SNO sing 304 n n C8 O3 SNO sing 305 n n C8 H81 SNO sing 306 n n C8 H82 SNO sing 307 n n N1 O1 SNO sing 308 n n N1 O2 SNO doub 309 n n # _atom_sites.entry_id 5YB5 _atom_sites.fract_transf_matrix[1][1] 0.014225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SNO B 1 401 1 SNO SNO . C 3 HOH B 1 501 12 HOH HOH . C 3 HOH B 2 502 67 HOH HOH . C 3 HOH B 3 503 131 HOH HOH . C 3 HOH B 4 504 68 HOH HOH . C 3 HOH B 5 505 109 HOH HOH . C 3 HOH B 6 506 1 HOH HOH . C 3 HOH B 7 507 3 HOH HOH . C 3 HOH B 8 508 58 HOH HOH . C 3 HOH B 9 509 57 HOH HOH . C 3 HOH B 10 510 49 HOH HOH . C 3 HOH B 11 511 30 HOH HOH . C 3 HOH B 12 512 81 HOH HOH . C 3 HOH B 13 513 31 HOH HOH . C 3 HOH B 14 514 113 HOH HOH . C 3 HOH B 15 515 101 HOH HOH . C 3 HOH B 16 516 149 HOH HOH . C 3 HOH B 17 517 148 HOH HOH . C 3 HOH B 18 518 37 HOH HOH . C 3 HOH B 19 519 2 HOH HOH . C 3 HOH B 20 520 64 HOH HOH . C 3 HOH B 21 521 36 HOH HOH . C 3 HOH B 22 522 51 HOH HOH . C 3 HOH B 23 523 50 HOH HOH . C 3 HOH B 24 524 85 HOH HOH . C 3 HOH B 25 525 112 HOH HOH . C 3 HOH B 26 526 25 HOH HOH . C 3 HOH B 27 527 62 HOH HOH . C 3 HOH B 28 528 35 HOH HOH . C 3 HOH B 29 529 127 HOH HOH . C 3 HOH B 30 530 72 HOH HOH . C 3 HOH B 31 531 13 HOH HOH . C 3 HOH B 32 532 22 HOH HOH . C 3 HOH B 33 533 9 HOH HOH . C 3 HOH B 34 534 135 HOH HOH . C 3 HOH B 35 535 24 HOH HOH . C 3 HOH B 36 536 42 HOH HOH . C 3 HOH B 37 537 61 HOH HOH . C 3 HOH B 38 538 16 HOH HOH . C 3 HOH B 39 539 10 HOH HOH . C 3 HOH B 40 540 34 HOH HOH . C 3 HOH B 41 541 40 HOH HOH . C 3 HOH B 42 542 76 HOH HOH . C 3 HOH B 43 543 46 HOH HOH . C 3 HOH B 44 544 19 HOH HOH . C 3 HOH B 45 545 18 HOH HOH . C 3 HOH B 46 546 94 HOH HOH . C 3 HOH B 47 547 70 HOH HOH . C 3 HOH B 48 548 23 HOH HOH . C 3 HOH B 49 549 89 HOH HOH . C 3 HOH B 50 550 7 HOH HOH . C 3 HOH B 51 551 95 HOH HOH . C 3 HOH B 52 552 6 HOH HOH . C 3 HOH B 53 553 38 HOH HOH . C 3 HOH B 54 554 92 HOH HOH . C 3 HOH B 55 555 98 HOH HOH . C 3 HOH B 56 556 88 HOH HOH . C 3 HOH B 57 557 87 HOH HOH . C 3 HOH B 58 558 97 HOH HOH . C 3 HOH B 59 559 111 HOH HOH . C 3 HOH B 60 560 86 HOH HOH . C 3 HOH B 61 561 41 HOH HOH . C 3 HOH B 62 562 29 HOH HOH . C 3 HOH B 63 563 132 HOH HOH . C 3 HOH B 64 564 43 HOH HOH . C 3 HOH B 65 565 52 HOH HOH . C 3 HOH B 66 566 55 HOH HOH . C 3 HOH B 67 567 27 HOH HOH . C 3 HOH B 68 568 74 HOH HOH . C 3 HOH B 69 569 102 HOH HOH . C 3 HOH B 70 570 134 HOH HOH . C 3 HOH B 71 571 105 HOH HOH . C 3 HOH B 72 572 28 HOH HOH . C 3 HOH B 73 573 33 HOH HOH . C 3 HOH B 74 574 4 HOH HOH . C 3 HOH B 75 575 17 HOH HOH . C 3 HOH B 76 576 91 HOH HOH . C 3 HOH B 77 577 5 HOH HOH . C 3 HOH B 78 578 77 HOH HOH . C 3 HOH B 79 579 71 HOH HOH . C 3 HOH B 80 580 122 HOH HOH . C 3 HOH B 81 581 11 HOH HOH . C 3 HOH B 82 582 153 HOH HOH . C 3 HOH B 83 583 73 HOH HOH . C 3 HOH B 84 584 93 HOH HOH . C 3 HOH B 85 585 117 HOH HOH . C 3 HOH B 86 586 78 HOH HOH . C 3 HOH B 87 587 75 HOH HOH . C 3 HOH B 88 588 150 HOH HOH . C 3 HOH B 89 589 15 HOH HOH . C 3 HOH B 90 590 140 HOH HOH . C 3 HOH B 91 591 14 HOH HOH . C 3 HOH B 92 592 26 HOH HOH . C 3 HOH B 93 593 59 HOH HOH . C 3 HOH B 94 594 129 HOH HOH . C 3 HOH B 95 595 45 HOH HOH . C 3 HOH B 96 596 21 HOH HOH . C 3 HOH B 97 597 116 HOH HOH . C 3 HOH B 98 598 39 HOH HOH . C 3 HOH B 99 599 20 HOH HOH . C 3 HOH B 100 600 48 HOH HOH . C 3 HOH B 101 601 65 HOH HOH . C 3 HOH B 102 602 90 HOH HOH . C 3 HOH B 103 603 60 HOH HOH . C 3 HOH B 104 604 107 HOH HOH . C 3 HOH B 105 605 69 HOH HOH . C 3 HOH B 106 606 147 HOH HOH . C 3 HOH B 107 607 99 HOH HOH . C 3 HOH B 108 608 123 HOH HOH . C 3 HOH B 109 609 103 HOH HOH . C 3 HOH B 110 610 121 HOH HOH . C 3 HOH B 111 611 8 HOH HOH . C 3 HOH B 112 612 124 HOH HOH . C 3 HOH B 113 613 126 HOH HOH . C 3 HOH B 114 614 63 HOH HOH . C 3 HOH B 115 615 100 HOH HOH . C 3 HOH B 116 616 120 HOH HOH . C 3 HOH B 117 617 80 HOH HOH . C 3 HOH B 118 618 119 HOH HOH . C 3 HOH B 119 619 47 HOH HOH . C 3 HOH B 120 620 106 HOH HOH . C 3 HOH B 121 621 83 HOH HOH . C 3 HOH B 122 622 130 HOH HOH . C 3 HOH B 123 623 137 HOH HOH . C 3 HOH B 124 624 44 HOH HOH . C 3 HOH B 125 625 145 HOH HOH . C 3 HOH B 126 626 96 HOH HOH . C 3 HOH B 127 627 108 HOH HOH . C 3 HOH B 128 628 115 HOH HOH . C 3 HOH B 129 629 82 HOH HOH . C 3 HOH B 130 630 154 HOH HOH . C 3 HOH B 131 631 136 HOH HOH . C 3 HOH B 132 632 114 HOH HOH . C 3 HOH B 133 633 152 HOH HOH . C 3 HOH B 134 634 155 HOH HOH . C 3 HOH B 135 635 104 HOH HOH . C 3 HOH B 136 636 143 HOH HOH . C 3 HOH B 137 637 110 HOH HOH . C 3 HOH B 138 638 139 HOH HOH . C 3 HOH B 139 639 144 HOH HOH . C 3 HOH B 140 640 138 HOH HOH . C 3 HOH B 141 641 142 HOH HOH . C 3 HOH B 142 642 141 HOH HOH . C 3 HOH B 143 643 32 HOH HOH . C 3 HOH B 144 644 146 HOH HOH . C 3 HOH B 145 645 56 HOH HOH . C 3 HOH B 146 646 84 HOH HOH . C 3 HOH B 147 647 118 HOH HOH . C 3 HOH B 148 648 151 HOH HOH . C 3 HOH B 149 649 125 HOH HOH . C 3 HOH B 150 650 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SNO . . . B 2 20.46 -14.591 -3.56 1 38.7 ? C1 SNO 401 B 1 HETATM 2 C C2 SNO . . . B 2 20.152 -14.52 -2.331 1 37.4 ? C2 SNO 401 B 1 HETATM 3 C C3 SNO . . . B 2 19.069 -13.835 -1.949 1 37.27 ? C3 SNO 401 B 1 HETATM 4 C C4 SNO . . . B 2 18.262 -13.137 -2.892 1 36.86 ? C4 SNO 401 B 1 HETATM 5 C C5 SNO . . . B 2 18.735 -13.301 -4.261 1 34.03 ? C5 SNO 401 B 1 HETATM 6 C C6 SNO . . . B 2 19.864 -14.034 -4.515 1 35.41 ? C6 SNO 401 B 1 HETATM 7 C C7 SNO . . . B 2 17.058 -12.328 -2.429 1 40.94 ? C7 SNO 401 B 1 HETATM 8 C C8 SNO . . . B 2 16.471 -12.634 -0.973 1 43.22 ? C8 SNO 401 B 1 HETATM 9 N N1 SNO . . . B 2 21.623 -15.352 -3.78 1 44.29 ? N1 SNO 401 B 1 HETATM 10 O O1 SNO . . . B 2 21.653 -16.513 -4.058 1 44.85 ? O1 SNO 401 B 1 HETATM 11 O O2 SNO . . . B 2 22.665 -14.791 -3.629 1 48.83 ? O2 SNO 401 B 1 HETATM 12 O O3 SNO . . . B 2 17.303 -11.588 -1.298 1 46.58 ? O3 SNO 401 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 12 #