data_5YBE
#
_model_server_result.job_id            FOUz02ZrAQSwnTl39NttTw 
_model_server_result.datetime_utc      '2024-11-24 12:31:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ybe 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1201}' 
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_entry.id    5YBE 
#
_exptl.entry_id    5YBE 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YBE 
_cell.length_a            35.513 
_cell.length_b            51.958 
_cell.length_c            136.984 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YBE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5YBE 
_atom_sites.fract_transf_matrix[1][1]    0.028159 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019246 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO B 1 1201 1 EDO EDO . 
D 4 HOH A 1 1401 66 HOH HOH . 
D 4 HOH A 2 1402 72 HOH HOH . 
D 4 HOH A 3 1403 63 HOH HOH . 
D 4 HOH A 4 1404 70 HOH HOH . 
D 4 HOH A 5 1405 67 HOH HOH . 
D 4 HOH A 6 1406 22 HOH HOH . 
D 4 HOH A 7 1407 68 HOH HOH . 
D 4 HOH A 8 1408 35 HOH HOH . 
D 4 HOH A 9 1409 20 HOH HOH . 
D 4 HOH A 10 1410 26 HOH HOH . 
D 4 HOH A 11 1411 25 HOH HOH . 
D 4 HOH A 12 1412 3 HOH HOH . 
D 4 HOH A 13 1413 1 HOH HOH . 
D 4 HOH A 14 1414 12 HOH HOH . 
D 4 HOH A 15 1415 9 HOH HOH . 
D 4 HOH A 16 1416 14 HOH HOH . 
D 4 HOH A 17 1417 33 HOH HOH . 
D 4 HOH A 18 1418 64 HOH HOH . 
D 4 HOH A 19 1419 53 HOH HOH . 
D 4 HOH A 20 1420 2 HOH HOH . 
D 4 HOH A 21 1421 48 HOH HOH . 
D 4 HOH A 22 1422 11 HOH HOH . 
D 4 HOH A 23 1423 81 HOH HOH . 
D 4 HOH A 24 1424 41 HOH HOH . 
D 4 HOH A 25 1425 28 HOH HOH . 
D 4 HOH A 26 1426 89 HOH HOH . 
D 4 HOH A 27 1427 7 HOH HOH . 
D 4 HOH A 28 1428 24 HOH HOH . 
D 4 HOH A 29 1429 84 HOH HOH . 
D 4 HOH A 30 1430 10 HOH HOH . 
D 4 HOH A 31 1431 34 HOH HOH . 
D 4 HOH A 32 1432 46 HOH HOH . 
D 4 HOH A 33 1433 77 HOH HOH . 
D 4 HOH A 34 1434 19 HOH HOH . 
D 4 HOH A 35 1435 39 HOH HOH . 
D 4 HOH A 36 1436 85 HOH HOH . 
D 4 HOH A 37 1437 4 HOH HOH . 
D 4 HOH A 38 1438 23 HOH HOH . 
D 4 HOH A 39 1439 47 HOH HOH . 
D 4 HOH A 40 1440 55 HOH HOH . 
D 4 HOH A 41 1441 45 HOH HOH . 
D 4 HOH A 42 1442 54 HOH HOH . 
D 4 HOH A 43 1443 60 HOH HOH . 
D 4 HOH A 44 1444 13 HOH HOH . 
D 4 HOH A 45 1445 83 HOH HOH . 
D 4 HOH A 46 1446 56 HOH HOH . 
D 4 HOH A 47 1447 32 HOH HOH . 
D 4 HOH A 48 1448 17 HOH HOH . 
D 4 HOH A 49 1449 71 HOH HOH . 
D 4 HOH A 50 1450 75 HOH HOH . 
D 4 HOH A 51 1451 51 HOH HOH . 
D 4 HOH A 52 1452 82 HOH HOH . 
D 4 HOH A 53 1453 16 HOH HOH . 
D 4 HOH A 54 1454 18 HOH HOH . 
D 4 HOH A 55 1455 74 HOH HOH . 
D 4 HOH A 56 1456 43 HOH HOH . 
D 4 HOH A 57 1457 50 HOH HOH . 
D 4 HOH A 58 1458 65 HOH HOH . 
D 4 HOH A 59 1459 6 HOH HOH . 
D 4 HOH A 60 1460 86 HOH HOH . 
D 4 HOH A 61 1461 40 HOH HOH . 
D 4 HOH A 62 1462 59 HOH HOH . 
D 4 HOH A 63 1463 57 HOH HOH . 
D 4 HOH A 64 1464 52 HOH HOH . 
D 4 HOH A 65 1465 93 HOH HOH . 
D 4 HOH A 66 1466 80 HOH HOH . 
D 4 HOH A 67 1467 91 HOH HOH . 
D 4 HOH A 68 1468 92 HOH HOH . 
D 4 HOH A 69 1469 31 HOH HOH . 
D 4 HOH A 70 1470 61 HOH HOH . 
D 4 HOH A 71 1471 87 HOH HOH . 
D 4 HOH A 72 1472 73 HOH HOH . 
D 4 HOH A 73 1473 90 HOH HOH . 
D 4 HOH A 74 1474 79 HOH HOH . 
D 4 HOH A 75 1475 88 HOH HOH . 
D 4 HOH A 76 1476 21 HOH HOH . 
D 4 HOH A 77 1477 76 HOH HOH . 
D 4 HOH A 78 1478 42 HOH HOH . 
D 4 HOH A 79 1479 62 HOH HOH . 
E 4 HOH B 1 1301 94 HOH HOH . 
E 4 HOH B 2 1302 69 HOH HOH . 
E 4 HOH B 3 1303 49 HOH HOH . 
E 4 HOH B 4 1304 8 HOH HOH . 
E 4 HOH B 5 1305 15 HOH HOH . 
E 4 HOH B 6 1306 27 HOH HOH . 
E 4 HOH B 7 1307 5 HOH HOH . 
E 4 HOH B 8 1308 29 HOH HOH . 
E 4 HOH B 9 1309 37 HOH HOH . 
E 4 HOH B 10 1310 30 HOH HOH . 
E 4 HOH B 11 1311 36 HOH HOH . 
E 4 HOH B 12 1312 44 HOH HOH . 
E 4 HOH B 13 1313 78 HOH HOH . 
E 4 HOH B 14 1314 58 HOH HOH . 
E 4 HOH B 15 1315 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 39.529 -6.837 98.217 1 38.02 ? C1 EDO 1201 B 1 
HETATM 2 O O1 EDO . . . C 3 39.129 -5.88 99.242 1 39.45 ? O1 EDO 1201 B 1 
HETATM 3 C C2 EDO . . . C 3 40.992 -6.721 97.739 1 37.46 ? C2 EDO 1201 B 1 
HETATM 4 O O2 EDO . . . C 3 41.928 -6.691 98.852 1 41.37 ? O2 EDO 1201 B 1 
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_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
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