data_5YBS
#
_model_server_result.job_id            Kx5R1oJt5HVAwrtqUAPNEA 
_model_server_result.datetime_utc      '2025-02-26 21:41:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ybs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    5YBS 
#
_exptl.entry_id    5YBS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (III) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YBS 
_cell.length_a            171.452 
_cell.length_b            171.452 
_cell.length_c            45.794 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 146 A HIS 130 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc2 A OD1 ASP 148 A ASP 132 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc3 A NE2 HIS 230 A HIS 214 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc4 C FE FE . A FE 301 1_555 D O2 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc5 C FE FE . A FE 301 1_555 D O5 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc6 C FE FE . A FE 301 1_555 H O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc7 B NE2 HIS 146 B HIS 130 1_555 E FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc8 B OD1 ASP 148 B ASP 132 1_555 E FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc9 B NE2 HIS 230 B HIS 214 1_555 E FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc10 E FE FE . B FE 301 1_555 F O1 AKG . B AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc11 E FE FE . B FE 301 1_555 F O5 AKG . B AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc12 E FE FE . B FE 301 1_555 I O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
#
_chem_comp.formula           'Fe 3' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YBS 
_atom_sites.fract_transf_matrix[1][1]    0.005833 
_atom_sites.fract_transf_matrix[1][2]    0.003367 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006735 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 301 1 FE FE . 
D 3 AKG A 1 302 1 AKG AKG . 
E 2 FE B 1 301 2 FE FE . 
F 3 AKG B 1 302 2 AKG AKG . 
G 4 8TC B 1 303 3 8TC LIG . 
H 5 HOH A 1 401 26 HOH HOH . 
H 5 HOH A 2 402 18 HOH HOH . 
H 5 HOH A 3 403 38 HOH HOH . 
H 5 HOH A 4 404 95 HOH HOH . 
H 5 HOH A 5 405 52 HOH HOH . 
H 5 HOH A 6 406 3 HOH HOH . 
H 5 HOH A 7 407 22 HOH HOH . 
H 5 HOH A 8 408 133 HOH HOH . 
H 5 HOH A 9 409 11 HOH HOH . 
H 5 HOH A 10 410 5 HOH HOH . 
H 5 HOH A 11 411 74 HOH HOH . 
H 5 HOH A 12 412 134 HOH HOH . 
H 5 HOH A 13 413 2 HOH HOH . 
H 5 HOH A 14 414 8 HOH HOH . 
H 5 HOH A 15 415 89 HOH HOH . 
H 5 HOH A 16 416 104 HOH HOH . 
H 5 HOH A 17 417 6 HOH HOH . 
H 5 HOH A 18 418 54 HOH HOH . 
H 5 HOH A 19 419 110 HOH HOH . 
H 5 HOH A 20 420 76 HOH HOH . 
H 5 HOH A 21 421 79 HOH HOH . 
H 5 HOH A 22 422 42 HOH HOH . 
H 5 HOH A 23 423 94 HOH HOH . 
H 5 HOH A 24 424 7 HOH HOH . 
H 5 HOH A 25 425 23 HOH HOH . 
H 5 HOH A 26 426 34 HOH HOH . 
H 5 HOH A 27 427 41 HOH HOH . 
H 5 HOH A 28 428 84 HOH HOH . 
H 5 HOH A 29 429 62 HOH HOH . 
H 5 HOH A 30 430 24 HOH HOH . 
H 5 HOH A 31 431 35 HOH HOH . 
H 5 HOH A 32 432 43 HOH HOH . 
H 5 HOH A 33 433 9 HOH HOH . 
H 5 HOH A 34 434 44 HOH HOH . 
H 5 HOH A 35 435 51 HOH HOH . 
H 5 HOH A 36 436 21 HOH HOH . 
H 5 HOH A 37 437 48 HOH HOH . 
H 5 HOH A 38 438 17 HOH HOH . 
H 5 HOH A 39 439 61 HOH HOH . 
H 5 HOH A 40 440 85 HOH HOH . 
H 5 HOH A 41 441 32 HOH HOH . 
H 5 HOH A 42 442 137 HOH HOH . 
H 5 HOH A 43 443 39 HOH HOH . 
H 5 HOH A 44 444 31 HOH HOH . 
H 5 HOH A 45 445 122 HOH HOH . 
H 5 HOH A 46 446 123 HOH HOH . 
H 5 HOH A 47 447 93 HOH HOH . 
H 5 HOH A 48 448 75 HOH HOH . 
H 5 HOH A 49 449 99 HOH HOH . 
H 5 HOH A 50 450 97 HOH HOH . 
H 5 HOH A 51 451 138 HOH HOH . 
H 5 HOH A 52 452 63 HOH HOH . 
H 5 HOH A 53 453 124 HOH HOH . 
H 5 HOH A 54 454 28 HOH HOH . 
H 5 HOH A 55 455 33 HOH HOH . 
H 5 HOH A 56 456 148 HOH HOH . 
H 5 HOH A 57 457 144 HOH HOH . 
H 5 HOH A 58 458 166 HOH HOH . 
H 5 HOH A 59 459 146 HOH HOH . 
H 5 HOH A 60 460 119 HOH HOH . 
H 5 HOH A 61 461 80 HOH HOH . 
H 5 HOH A 62 462 46 HOH HOH . 
H 5 HOH A 63 463 106 HOH HOH . 
H 5 HOH A 64 464 118 HOH HOH . 
H 5 HOH A 65 465 170 HOH HOH . 
H 5 HOH A 66 466 66 HOH HOH . 
H 5 HOH A 67 467 165 HOH HOH . 
H 5 HOH A 68 468 158 HOH HOH . 
H 5 HOH A 69 469 82 HOH HOH . 
H 5 HOH A 70 470 140 HOH HOH . 
H 5 HOH A 71 471 157 HOH HOH . 
H 5 HOH A 72 472 167 HOH HOH . 
H 5 HOH A 73 473 72 HOH HOH . 
H 5 HOH A 74 474 181 HOH HOH . 
I 5 HOH B 1 401 20 HOH HOH . 
I 5 HOH B 2 402 4 HOH HOH . 
I 5 HOH B 3 403 57 HOH HOH . 
I 5 HOH B 4 404 45 HOH HOH . 
I 5 HOH B 5 405 10 HOH HOH . 
I 5 HOH B 6 406 69 HOH HOH . 
I 5 HOH B 7 407 15 HOH HOH . 
I 5 HOH B 8 408 156 HOH HOH . 
I 5 HOH B 9 409 27 HOH HOH . 
I 5 HOH B 10 410 135 HOH HOH . 
I 5 HOH B 11 411 19 HOH HOH . 
I 5 HOH B 12 412 30 HOH HOH . 
I 5 HOH B 13 413 14 HOH HOH . 
I 5 HOH B 14 414 58 HOH HOH . 
I 5 HOH B 15 415 16 HOH HOH . 
I 5 HOH B 16 416 12 HOH HOH . 
I 5 HOH B 17 417 1 HOH HOH . 
I 5 HOH B 18 418 64 HOH HOH . 
I 5 HOH B 19 419 55 HOH HOH . 
I 5 HOH B 20 420 185 HOH HOH . 
I 5 HOH B 21 421 111 HOH HOH . 
I 5 HOH B 22 422 139 HOH HOH . 
I 5 HOH B 23 423 145 HOH HOH . 
I 5 HOH B 24 424 154 HOH HOH . 
I 5 HOH B 25 425 68 HOH HOH . 
I 5 HOH B 26 426 40 HOH HOH . 
I 5 HOH B 27 427 92 HOH HOH . 
I 5 HOH B 28 428 13 HOH HOH . 
I 5 HOH B 29 429 132 HOH HOH . 
I 5 HOH B 30 430 77 HOH HOH . 
I 5 HOH B 31 431 105 HOH HOH . 
I 5 HOH B 32 432 120 HOH HOH . 
I 5 HOH B 33 433 73 HOH HOH . 
I 5 HOH B 34 434 107 HOH HOH . 
I 5 HOH B 35 435 159 HOH HOH . 
I 5 HOH B 36 436 142 HOH HOH . 
I 5 HOH B 37 437 149 HOH HOH . 
I 5 HOH B 38 438 88 HOH HOH . 
I 5 HOH B 39 439 184 HOH HOH . 
I 5 HOH B 40 440 56 HOH HOH . 
I 5 HOH B 41 441 71 HOH HOH . 
I 5 HOH B 42 442 60 HOH HOH . 
I 5 HOH B 43 443 87 HOH HOH . 
I 5 HOH B 44 444 108 HOH HOH . 
I 5 HOH B 45 445 173 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               105.194 
_atom_site.Cartn_y               211.92 
_atom_site.Cartn_z               18.243 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.05 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#