data_5YC5 # _model_server_result.job_id B2sJcA3yEy7rzKO9rFRUcg _model_server_result.datetime_utc '2024-11-22 11:42:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1012}' # _entry.id 5YC5 # _exptl.entry_id 5YC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YC5 _cell.length_a 72.79 _cell.length_b 101.42 _cell.length_c 122.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 5 GAL NAG C1 O1 . O4 HO4 . sing 6 ? 3 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 3 8 7 NAG MAN C1 O1 . O2 HO2 . sing 8 ? 3 9 1 FUC NAG C1 O1 . O6 HO6 . sing 9 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 11 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 12 ? 4 5 4 NAG MAN C1 O1 . O2 HO2 . sing 13 ? 4 6 3 MAN BMA C1 O1 . O6 HO6 . sing 14 ? 4 7 6 NAG MAN C1 O1 . O2 HO2 . sing 15 ? 4 8 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG A 1001 NAG 3 n D NAG 2 D 2 NAG A 1002 NAG 3 n D BMA 3 D 3 BMA A 1003 BMA 3 n D MAN 4 D 4 MAN A 1007 MAN 3 n D NAG 5 D 5 NAG A 1008 NAG 3 n D GAL 6 D 6 GAL A 1009 GAL 3 n D MAN 7 D 7 MAN A 1004 MAN 3 n D NAG 8 D 8 NAG A 1005 NAG 3 n D FUC 9 D 9 FUC A 1011 FUC 4 n E NAG 1 E 1 NAG B 1001 NAG 4 n E NAG 2 E 2 NAG B 1002 NAG 4 n E BMA 3 E 3 BMA B 1003 BMA 4 n E MAN 4 E 4 MAN B 1004 MAN 4 n E NAG 5 E 5 NAG B 1005 NAG 4 n E MAN 6 E 6 MAN B 1007 MAN 4 n E NAG 7 E 7 NAG B 1008 NAG 4 n E FUC 8 E 8 FUC B 1011 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 261 1_555 A SG CYS 98 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 144 A CYS 367 1_555 A SG CYS 202 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf3 B SG CYS 38 B CYS 261 1_555 B SG CYS 98 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf4 B SG CYS 144 B CYS 367 1_555 B SG CYS 202 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 C SG CYS 29 C CYS 29 1_555 C SG CYS 71 C CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf6 C SG CYS 110 C CYS 110 1_555 C SG CYS 154 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 74 A ASN 297 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 74 B ASN 297 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale6 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale7 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale8 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 D O4 NAG . D NAG 5 1_555 D C1 GAL . D GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 D O2 MAN . D MAN 7 1_555 D C1 NAG . D NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale12 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale13 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale14 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale15 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale16 E O2 MAN . E MAN 4 1_555 E C1 NAG . E NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale17 E O2 MAN . E MAN 6 1_555 E C1 NAG . E NAG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YC5 _atom_sites.fract_transf_matrix[1][1] 0.013738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CL A 1 1012 5 CL CL . G 6 HOH A 1 1101 23 HOH HOH . G 6 HOH A 2 1102 24 HOH HOH . G 6 HOH A 3 1103 5 HOH HOH . G 6 HOH A 4 1104 2 HOH HOH . G 6 HOH A 5 1105 7 HOH HOH . G 6 HOH A 6 1106 3 HOH HOH . G 6 HOH A 7 1107 28 HOH HOH . G 6 HOH A 8 1108 1 HOH HOH . G 6 HOH A 9 1109 4 HOH HOH . G 6 HOH A 10 1110 10 HOH HOH . G 6 HOH A 11 1111 36 HOH HOH . G 6 HOH A 12 1112 6 HOH HOH . G 6 HOH A 13 1113 37 HOH HOH . G 6 HOH A 14 1114 8 HOH HOH . G 6 HOH A 15 1115 32 HOH HOH . G 6 HOH A 16 1116 26 HOH HOH . G 6 HOH A 17 1117 9 HOH HOH . G 6 HOH A 18 1118 35 HOH HOH . H 6 HOH B 1 1101 16 HOH HOH . H 6 HOH B 2 1102 21 HOH HOH . H 6 HOH B 3 1103 12 HOH HOH . H 6 HOH B 4 1104 14 HOH HOH . H 6 HOH B 5 1105 20 HOH HOH . H 6 HOH B 6 1106 17 HOH HOH . H 6 HOH B 7 1107 15 HOH HOH . H 6 HOH B 8 1108 31 HOH HOH . H 6 HOH B 9 1109 30 HOH HOH . H 6 HOH B 10 1110 13 HOH HOH . I 6 HOH C 1 201 19 HOH HOH . I 6 HOH C 2 202 18 HOH HOH . I 6 HOH C 3 203 11 HOH HOH . I 6 HOH C 4 204 29 HOH HOH . I 6 HOH C 5 205 33 HOH HOH . I 6 HOH C 6 206 34 HOH HOH . I 6 HOH C 7 207 22 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -66.525 _atom_site.Cartn_y 157.487 _atom_site.Cartn_z 28.998 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 1012 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #