data_5YC6
#
_model_server_result.job_id            JS3BPfHoHAT7lUEYU7pi6g 
_model_server_result.datetime_utc      '2024-11-28 02:08:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yc6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5YC6 
#
_exptl.entry_id    5YC6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YC6 
_cell.length_a            120.853 
_cell.length_b            120.853 
_cell.length_c            42.627 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YC6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 237 n n 
C1 C2 PGE sing 238 n n 
C1 H1 PGE sing 239 n n 
C1 H12 PGE sing 240 n n 
O1 HO1 PGE sing 241 n n 
C2 O2 PGE sing 242 n n 
C2 H2 PGE sing 243 n n 
C2 H22 PGE sing 244 n n 
O2 C3 PGE sing 245 n n 
C3 C4 PGE sing 246 n n 
C3 H3 PGE sing 247 n n 
C3 H32 PGE sing 248 n n 
C4 O3 PGE sing 249 n n 
C4 H4 PGE sing 250 n n 
C4 H42 PGE sing 251 n n 
O4 C6 PGE sing 252 n n 
O4 HO4 PGE sing 253 n n 
C6 C5 PGE sing 254 n n 
C6 H6 PGE sing 255 n n 
C6 H62 PGE sing 256 n n 
C5 O3 PGE sing 257 n n 
C5 H5 PGE sing 258 n n 
C5 H52 PGE sing 259 n n 
#
_atom_sites.entry_id                     5YC6 
_atom_sites.fract_transf_matrix[1][1]    0.008275 
_atom_sites.fract_transf_matrix[1][2]    0.004777 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PZH U 1 301 301 PZH PZH . 
C 3 SO4 U 1 302 302 SO4 SO4 . 
D 4 PGE U 1 303 304 PGE PGE . 
E 4 PGE U 1 304 305 PGE PGE . 
F 5 HOH U 1 401 401 HOH HOH . 
F 5 HOH U 2 402 402 HOH HOH . 
F 5 HOH U 3 403 403 HOH HOH . 
F 5 HOH U 4 404 404 HOH HOH . 
F 5 HOH U 5 405 405 HOH HOH . 
F 5 HOH U 6 406 406 HOH HOH . 
F 5 HOH U 7 407 407 HOH HOH . 
F 5 HOH U 8 408 408 HOH HOH . 
F 5 HOH U 9 409 409 HOH HOH . 
F 5 HOH U 10 410 410 HOH HOH . 
F 5 HOH U 11 411 411 HOH HOH . 
F 5 HOH U 12 412 412 HOH HOH . 
F 5 HOH U 13 413 413 HOH HOH . 
F 5 HOH U 14 414 414 HOH HOH . 
F 5 HOH U 15 415 415 HOH HOH . 
F 5 HOH U 16 416 416 HOH HOH . 
F 5 HOH U 17 417 417 HOH HOH . 
F 5 HOH U 18 418 418 HOH HOH . 
F 5 HOH U 19 419 419 HOH HOH . 
F 5 HOH U 20 420 420 HOH HOH . 
F 5 HOH U 21 421 421 HOH HOH . 
F 5 HOH U 22 422 422 HOH HOH . 
F 5 HOH U 23 423 423 HOH HOH . 
F 5 HOH U 24 424 424 HOH HOH . 
F 5 HOH U 25 425 425 HOH HOH . 
F 5 HOH U 26 426 426 HOH HOH . 
F 5 HOH U 27 427 427 HOH HOH . 
F 5 HOH U 28 428 428 HOH HOH . 
F 5 HOH U 29 429 429 HOH HOH . 
F 5 HOH U 30 430 430 HOH HOH . 
F 5 HOH U 31 431 431 HOH HOH . 
F 5 HOH U 32 432 432 HOH HOH . 
F 5 HOH U 33 433 433 HOH HOH . 
F 5 HOH U 34 434 434 HOH HOH . 
F 5 HOH U 35 435 435 HOH HOH . 
F 5 HOH U 36 436 436 HOH HOH . 
F 5 HOH U 37 437 437 HOH HOH . 
F 5 HOH U 38 438 438 HOH HOH . 
F 5 HOH U 39 439 439 HOH HOH . 
F 5 HOH U 40 440 440 HOH HOH . 
F 5 HOH U 41 441 441 HOH HOH . 
F 5 HOH U 42 442 442 HOH HOH . 
F 5 HOH U 43 443 443 HOH HOH . 
F 5 HOH U 44 444 444 HOH HOH . 
F 5 HOH U 45 445 445 HOH HOH . 
F 5 HOH U 46 446 446 HOH HOH . 
F 5 HOH U 47 447 447 HOH HOH . 
F 5 HOH U 48 448 448 HOH HOH . 
F 5 HOH U 49 449 449 HOH HOH . 
F 5 HOH U 50 450 450 HOH HOH . 
F 5 HOH U 51 451 451 HOH HOH . 
F 5 HOH U 52 452 452 HOH HOH . 
F 5 HOH U 53 453 453 HOH HOH . 
F 5 HOH U 54 454 454 HOH HOH . 
F 5 HOH U 55 455 455 HOH HOH . 
F 5 HOH U 56 456 456 HOH HOH . 
F 5 HOH U 57 457 457 HOH HOH . 
F 5 HOH U 58 458 458 HOH HOH . 
F 5 HOH U 59 459 459 HOH HOH . 
F 5 HOH U 60 460 460 HOH HOH . 
F 5 HOH U 61 461 461 HOH HOH . 
F 5 HOH U 62 462 462 HOH HOH . 
F 5 HOH U 63 463 463 HOH HOH . 
F 5 HOH U 64 464 464 HOH HOH . 
F 5 HOH U 65 465 465 HOH HOH . 
F 5 HOH U 66 466 466 HOH HOH . 
F 5 HOH U 67 467 467 HOH HOH . 
F 5 HOH U 68 468 468 HOH HOH . 
F 5 HOH U 69 469 469 HOH HOH . 
F 5 HOH U 70 470 470 HOH HOH . 
F 5 HOH U 71 471 471 HOH HOH . 
F 5 HOH U 72 472 472 HOH HOH . 
F 5 HOH U 73 473 473 HOH HOH . 
F 5 HOH U 74 474 474 HOH HOH . 
F 5 HOH U 75 475 475 HOH HOH . 
F 5 HOH U 76 476 476 HOH HOH . 
F 5 HOH U 77 477 477 HOH HOH . 
F 5 HOH U 78 478 478 HOH HOH . 
F 5 HOH U 79 479 479 HOH HOH . 
F 5 HOH U 80 480 480 HOH HOH . 
F 5 HOH U 81 481 481 HOH HOH . 
F 5 HOH U 82 482 482 HOH HOH . 
F 5 HOH U 83 483 483 HOH HOH . 
F 5 HOH U 84 484 484 HOH HOH . 
F 5 HOH U 85 485 485 HOH HOH . 
F 5 HOH U 86 486 486 HOH HOH . 
F 5 HOH U 87 487 487 HOH HOH . 
F 5 HOH U 88 488 488 HOH HOH . 
F 5 HOH U 89 489 489 HOH HOH . 
F 5 HOH U 90 490 490 HOH HOH . 
F 5 HOH U 91 491 491 HOH HOH . 
F 5 HOH U 92 492 492 HOH HOH . 
F 5 HOH U 93 493 493 HOH HOH . 
F 5 HOH U 94 494 494 HOH HOH . 
F 5 HOH U 95 495 495 HOH HOH . 
F 5 HOH U 96 496 496 HOH HOH . 
F 5 HOH U 97 497 497 HOH HOH . 
F 5 HOH U 98 498 498 HOH HOH . 
F 5 HOH U 99 499 499 HOH HOH . 
F 5 HOH U 100 500 500 HOH HOH . 
F 5 HOH U 101 501 501 HOH HOH . 
F 5 HOH U 102 502 502 HOH HOH . 
F 5 HOH U 103 503 503 HOH HOH . 
F 5 HOH U 104 504 504 HOH HOH . 
F 5 HOH U 105 505 505 HOH HOH . 
F 5 HOH U 106 506 506 HOH HOH . 
F 5 HOH U 107 507 507 HOH HOH . 
F 5 HOH U 108 508 508 HOH HOH . 
F 5 HOH U 109 509 509 HOH HOH . 
F 5 HOH U 110 510 510 HOH HOH . 
F 5 HOH U 111 511 511 HOH HOH . 
F 5 HOH U 112 512 512 HOH HOH . 
F 5 HOH U 113 513 513 HOH HOH . 
F 5 HOH U 114 514 514 HOH HOH . 
F 5 HOH U 115 515 515 HOH HOH . 
F 5 HOH U 116 516 516 HOH HOH . 
F 5 HOH U 117 517 517 HOH HOH . 
F 5 HOH U 118 518 518 HOH HOH . 
F 5 HOH U 119 519 519 HOH HOH . 
F 5 HOH U 120 520 520 HOH HOH . 
F 5 HOH U 121 521 521 HOH HOH . 
F 5 HOH U 122 522 522 HOH HOH . 
F 5 HOH U 123 523 523 HOH HOH . 
F 5 HOH U 124 524 524 HOH HOH . 
F 5 HOH U 125 525 525 HOH HOH . 
F 5 HOH U 126 526 526 HOH HOH . 
F 5 HOH U 127 527 527 HOH HOH . 
F 5 HOH U 128 528 528 HOH HOH . 
F 5 HOH U 129 529 529 HOH HOH . 
F 5 HOH U 130 530 530 HOH HOH . 
F 5 HOH U 131 531 531 HOH HOH . 
F 5 HOH U 132 532 532 HOH HOH . 
F 5 HOH U 133 533 533 HOH HOH . 
F 5 HOH U 134 534 534 HOH HOH . 
F 5 HOH U 135 535 535 HOH HOH . 
F 5 HOH U 136 536 536 HOH HOH . 
F 5 HOH U 137 537 537 HOH HOH . 
F 5 HOH U 138 538 538 HOH HOH . 
F 5 HOH U 139 539 539 HOH HOH . 
F 5 HOH U 140 540 540 HOH HOH . 
F 5 HOH U 141 541 541 HOH HOH . 
F 5 HOH U 142 542 542 HOH HOH . 
F 5 HOH U 143 543 543 HOH HOH . 
F 5 HOH U 144 544 544 HOH HOH . 
F 5 HOH U 145 545 545 HOH HOH . 
F 5 HOH U 146 546 546 HOH HOH . 
F 5 HOH U 147 547 547 HOH HOH . 
F 5 HOH U 148 548 548 HOH HOH . 
F 5 HOH U 149 549 549 HOH HOH . 
F 5 HOH U 150 550 550 HOH HOH . 
F 5 HOH U 151 551 551 HOH HOH . 
F 5 HOH U 152 552 552 HOH HOH . 
F 5 HOH U 153 553 553 HOH HOH . 
F 5 HOH U 154 554 554 HOH HOH . 
F 5 HOH U 155 555 555 HOH HOH . 
F 5 HOH U 156 556 556 HOH HOH . 
F 5 HOH U 157 557 557 HOH HOH . 
F 5 HOH U 158 558 558 HOH HOH . 
F 5 HOH U 159 559 559 HOH HOH . 
F 5 HOH U 160 560 560 HOH HOH . 
F 5 HOH U 161 561 561 HOH HOH . 
F 5 HOH U 162 562 562 HOH HOH . 
F 5 HOH U 163 563 563 HOH HOH . 
F 5 HOH U 164 564 564 HOH HOH . 
F 5 HOH U 165 565 565 HOH HOH . 
F 5 HOH U 166 566 566 HOH HOH . 
F 5 HOH U 167 567 567 HOH HOH . 
F 5 HOH U 168 568 568 HOH HOH . 
F 5 HOH U 169 569 569 HOH HOH . 
F 5 HOH U 170 570 570 HOH HOH . 
F 5 HOH U 171 571 571 HOH HOH . 
F 5 HOH U 172 572 572 HOH HOH . 
F 5 HOH U 173 573 573 HOH HOH . 
F 5 HOH U 174 574 574 HOH HOH . 
F 5 HOH U 175 575 575 HOH HOH . 
F 5 HOH U 176 576 576 HOH HOH . 
F 5 HOH U 177 577 577 HOH HOH . 
F 5 HOH U 178 578 578 HOH HOH . 
F 5 HOH U 179 579 579 HOH HOH . 
F 5 HOH U 180 580 580 HOH HOH . 
F 5 HOH U 181 581 581 HOH HOH . 
F 5 HOH U 182 582 582 HOH HOH . 
F 5 HOH U 183 583 583 HOH HOH . 
F 5 HOH U 184 584 584 HOH HOH . 
F 5 HOH U 185 585 585 HOH HOH . 
F 5 HOH U 186 586 586 HOH HOH . 
F 5 HOH U 187 587 587 HOH HOH . 
F 5 HOH U 188 588 588 HOH HOH . 
F 5 HOH U 189 589 589 HOH HOH . 
F 5 HOH U 190 590 590 HOH HOH . 
F 5 HOH U 191 591 591 HOH HOH . 
F 5 HOH U 192 592 592 HOH HOH . 
F 5 HOH U 193 593 593 HOH HOH . 
F 5 HOH U 194 594 594 HOH HOH . 
F 5 HOH U 195 595 595 HOH HOH . 
F 5 HOH U 196 596 596 HOH HOH . 
F 5 HOH U 197 597 597 HOH HOH . 
F 5 HOH U 198 598 598 HOH HOH . 
F 5 HOH U 199 599 599 HOH HOH . 
F 5 HOH U 200 600 600 HOH HOH . 
F 5 HOH U 201 601 601 HOH HOH . 
F 5 HOH U 202 602 602 HOH HOH . 
F 5 HOH U 203 603 603 HOH HOH . 
F 5 HOH U 204 604 604 HOH HOH . 
F 5 HOH U 205 605 605 HOH HOH . 
F 5 HOH U 206 606 606 HOH HOH . 
F 5 HOH U 207 607 607 HOH HOH . 
F 5 HOH U 208 608 608 HOH HOH . 
F 5 HOH U 209 609 609 HOH HOH . 
F 5 HOH U 210 610 610 HOH HOH . 
F 5 HOH U 211 611 611 HOH HOH . 
F 5 HOH U 212 612 612 HOH HOH . 
F 5 HOH U 213 613 613 HOH HOH . 
F 5 HOH U 214 614 614 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . D 4 -46.046 -26.921 7.466 1 20.84 ? C1 PGE 303 U 1 
HETATM 2 O O1 PGE . . . D 4 -46.853 -27.923 8.036 1 25.02 ? O1 PGE 303 U 1 
HETATM 3 C C2 PGE . . . D 4 -44.589 -27.365 7.545 1 31.77 ? C2 PGE 303 U 1 
HETATM 4 O O2 PGE . . . D 4 -44.202 -27.385 8.913 1 32.28 ? O2 PGE 303 U 1 
HETATM 5 C C3 PGE . . . D 4 -42.832 -27.731 9.109 1 36.7 ? C3 PGE 303 U 1 
HETATM 6 C C4 PGE . . . D 4 -42.488 -27.45 10.562 1 37.09 ? C4 PGE 303 U 1 
HETATM 7 O O4 PGE . . . D 4 -45.35 -28.316 13.705 1 41.83 ? O4 PGE 303 U 1 
HETATM 8 C C6 PGE . . . D 4 -44.038 -28.869 13.61 1 44.09 ? C6 PGE 303 U 1 
HETATM 9 C C5 PGE . . . D 4 -43.163 -27.952 12.768 1 42.67 ? C5 PGE 303 U 1 
HETATM 10 O O3 PGE . . . D 4 -43.335 -28.247 11.388 1 34.31 ? O3 PGE 303 U 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           10 
#