data_5YC7 # _model_server_result.job_id yWfnTN9U-F6jhHX1Xr-87w _model_server_result.datetime_utc '2024-11-22 22:56:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5YC7 # _exptl.entry_id 5YC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.049 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-BROMOPHENYL)METHANAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YC7 _cell.length_a 121.575 _cell.length_b 121.575 _cell.length_c 42.212 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C7 H8 Br N' _chem_comp.formula_weight 186.049 _chem_comp.id PZH _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-BROMOPHENYL)METHANAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-BROMOBENZYLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CB PZH sing 277 n n N1 HN11 PZH sing 278 n n N1 HN12 PZH sing 279 n n CB CG PZH sing 280 n n CB HB1 PZH sing 281 n n CB HB2 PZH sing 282 n n CG CD1 PZH doub 283 n y CG CD2 PZH sing 284 n y CD1 CE1 PZH sing 285 n y CD1 HD1 PZH sing 286 n n CE1 CZ PZH doub 287 n y CE1 HE1 PZH sing 288 n n CZ CE2 PZH sing 289 n y CZ BR PZH sing 290 n n CE2 CD2 PZH doub 291 n y CE2 HE2 PZH sing 292 n n CD2 HD2 PZH sing 293 n n # _atom_sites.entry_id 5YC7 _atom_sites.fract_transf_matrix[1][1] 0.008225 _atom_sites.fract_transf_matrix[1][2] 0.004749 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PZH U 1 301 1 PZH PZH . C 3 SO4 U 1 302 1 SO4 SO4 . D 4 HOH U 1 401 31 HOH HOH . D 4 HOH U 2 402 10 HOH HOH . D 4 HOH U 3 403 2 HOH HOH . D 4 HOH U 4 404 1 HOH HOH . D 4 HOH U 5 405 25 HOH HOH . D 4 HOH U 6 406 15 HOH HOH . D 4 HOH U 7 407 39 HOH HOH . D 4 HOH U 8 408 9 HOH HOH . D 4 HOH U 9 409 11 HOH HOH . D 4 HOH U 10 410 19 HOH HOH . D 4 HOH U 11 411 23 HOH HOH . D 4 HOH U 12 412 38 HOH HOH . D 4 HOH U 13 413 16 HOH HOH . D 4 HOH U 14 414 21 HOH HOH . D 4 HOH U 15 415 3 HOH HOH . D 4 HOH U 16 416 28 HOH HOH . D 4 HOH U 17 417 22 HOH HOH . D 4 HOH U 18 418 30 HOH HOH . D 4 HOH U 19 419 5 HOH HOH . D 4 HOH U 20 420 24 HOH HOH . D 4 HOH U 21 421 34 HOH HOH . D 4 HOH U 22 422 29 HOH HOH . D 4 HOH U 23 423 37 HOH HOH . D 4 HOH U 24 424 7 HOH HOH . D 4 HOH U 25 425 36 HOH HOH . D 4 HOH U 26 426 20 HOH HOH . D 4 HOH U 27 427 18 HOH HOH . D 4 HOH U 28 428 6 HOH HOH . D 4 HOH U 29 429 13 HOH HOH . D 4 HOH U 30 430 35 HOH HOH . D 4 HOH U 31 431 14 HOH HOH . D 4 HOH U 32 432 4 HOH HOH . D 4 HOH U 33 433 12 HOH HOH . D 4 HOH U 34 434 32 HOH HOH . D 4 HOH U 35 435 17 HOH HOH . D 4 HOH U 36 436 26 HOH HOH . D 4 HOH U 37 437 8 HOH HOH . D 4 HOH U 38 438 27 HOH HOH . D 4 HOH U 39 439 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PZH . . . B 2 -28.806 -13.926 10.3 1 68.74 ? N1 PZH 301 U 1 HETATM 2 C CB PZH . . . B 2 -28.285 -15.176 10.806 1 68.46 ? CB PZH 301 U 1 HETATM 3 C CG PZH . . . B 2 -29.403 -16.171 10.941 1 77.91 ? CG PZH 301 U 1 HETATM 4 C CD1 PZH . . . B 2 -29.651 -16.76 12.176 1 83.75 ? CD1 PZH 301 U 1 HETATM 5 C CE1 PZH . . . B 2 -30.682 -17.68 12.296 1 89.99 ? CE1 PZH 301 U 1 HETATM 6 C CZ PZH . . . B 2 -31.461 -18.015 11.192 1 94.16 ? CZ PZH 301 U 1 HETATM 7 C CE2 PZH . . . B 2 -31.216 -17.426 9.953 1 86.97 ? CE2 PZH 301 U 1 HETATM 8 C CD2 PZH . . . B 2 -30.181 -16.503 9.827 1 81.21 ? CD2 PZH 301 U 1 HETATM 9 BR BR PZH . . . B 2 -32.853 -19.271 11.392 1 132.57 ? BR PZH 301 U 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #