data_5YC7
#
_model_server_result.job_id            Ndubx6TkbNn3HwzLG5hy-A 
_model_server_result.datetime_utc      '2024-11-26 11:13:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5YC7 
#
_exptl.entry_id    5YC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YC7 
_cell.length_a            121.575 
_cell.length_b            121.575 
_cell.length_c            42.212 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 307 n n 
S O2 SO4 doub 308 n n 
S O3 SO4 sing 309 n n 
S O4 SO4 sing 310 n n 
#
_atom_sites.entry_id                     5YC7 
_atom_sites.fract_transf_matrix[1][1]    0.008225 
_atom_sites.fract_transf_matrix[1][2]    0.004749 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009498 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PZH U 1 301 1 PZH PZH . 
C 3 SO4 U 1 302 1 SO4 SO4 . 
D 4 HOH U 1 401 31 HOH HOH . 
D 4 HOH U 2 402 10 HOH HOH . 
D 4 HOH U 3 403 2 HOH HOH . 
D 4 HOH U 4 404 1 HOH HOH . 
D 4 HOH U 5 405 25 HOH HOH . 
D 4 HOH U 6 406 15 HOH HOH . 
D 4 HOH U 7 407 39 HOH HOH . 
D 4 HOH U 8 408 9 HOH HOH . 
D 4 HOH U 9 409 11 HOH HOH . 
D 4 HOH U 10 410 19 HOH HOH . 
D 4 HOH U 11 411 23 HOH HOH . 
D 4 HOH U 12 412 38 HOH HOH . 
D 4 HOH U 13 413 16 HOH HOH . 
D 4 HOH U 14 414 21 HOH HOH . 
D 4 HOH U 15 415 3 HOH HOH . 
D 4 HOH U 16 416 28 HOH HOH . 
D 4 HOH U 17 417 22 HOH HOH . 
D 4 HOH U 18 418 30 HOH HOH . 
D 4 HOH U 19 419 5 HOH HOH . 
D 4 HOH U 20 420 24 HOH HOH . 
D 4 HOH U 21 421 34 HOH HOH . 
D 4 HOH U 22 422 29 HOH HOH . 
D 4 HOH U 23 423 37 HOH HOH . 
D 4 HOH U 24 424 7 HOH HOH . 
D 4 HOH U 25 425 36 HOH HOH . 
D 4 HOH U 26 426 20 HOH HOH . 
D 4 HOH U 27 427 18 HOH HOH . 
D 4 HOH U 28 428 6 HOH HOH . 
D 4 HOH U 29 429 13 HOH HOH . 
D 4 HOH U 30 430 35 HOH HOH . 
D 4 HOH U 31 431 14 HOH HOH . 
D 4 HOH U 32 432 4 HOH HOH . 
D 4 HOH U 33 433 12 HOH HOH . 
D 4 HOH U 34 434 32 HOH HOH . 
D 4 HOH U 35 435 17 HOH HOH . 
D 4 HOH U 36 436 26 HOH HOH . 
D 4 HOH U 37 437 8 HOH HOH . 
D 4 HOH U 38 438 27 HOH HOH . 
D 4 HOH U 39 439 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . C 3 -25.018 -13.788 8.449 1 90.26 ? S SO4 302 U 1 
HETATM 2 O O1 SO4 . . . C 3 -25.464 -15.181 8.207 1 82.93 ? O1 SO4 302 U 1 
HETATM 3 O O2 SO4 . . . C 3 -24.76 -13.037 7.2 1 92.99 ? O2 SO4 302 U 1 
HETATM 4 O O3 SO4 . . . C 3 -23.757 -13.837 9.224 1 98.93 ? O3 SO4 302 U 1 
HETATM 5 O O4 SO4 . . . C 3 -26.054 -13.038 9.187 1 93.88 ? O4 SO4 302 U 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#