data_5YC8 # _model_server_result.job_id WMcQ5W-G1pwCuf7r7G9ltg _model_server_result.datetime_utc '2024-11-28 23:58:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5YC8 # _exptl.entry_id 5YC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-methyl scopolamine' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.89 _cell.angle_gamma 90 _cell.entry_id 5YC8 _cell.length_a 46.52 _cell.length_b 59 _cell.length_c 89.22 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 96 1_555 A SG CYS 178 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 362 A CYS 413 1_555 A SG CYS 365 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A SG CYS 69 A CYS 67 1_555 C HG HG . A HG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc2 A SG CYS 69 A CYS 67 1_555 D HG HG . A HG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc3 A O ILE 384 A ILE 435 1_555 E HG HG . A HG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc4 A SG CYS 388 A CYS 439 1_555 E HG HG . A HG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C18 H24 N O4 1' _chem_comp.formula_weight 318.387 _chem_comp.id 3C0 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-methyl scopolamine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1R,2R,4S,5S,7s)-7-{[(2S)-3-hydroxy-2-phenylpropanoyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 3C0 doub 1 n y C07 C08 3C0 sing 2 n y C06 C05 3C0 sing 3 n y O18 C16 3C0 sing 4 n n O18 C17 3C0 sing 5 n n C08 C09 3C0 doub 6 n y C05 C04 3C0 doub 7 n y C16 C17 3C0 sing 8 n n C16 C15 3C0 sing 9 n n C17 C22 3C0 sing 10 n n C20 N19 3C0 sing 11 n n C09 C04 3C0 sing 12 n y C04 C03 3C0 sing 13 n n C15 N19 3C0 sing 14 n n C15 C14 3C0 sing 15 n n N19 C22 3C0 sing 16 n n N19 C21 3C0 sing 17 n n C22 C23 3C0 sing 18 n n C03 C10 3C0 sing 19 n n C03 C02 3C0 sing 20 n n O12 C13 3C0 sing 21 n n O12 C02 3C0 sing 22 n n C14 C13 3C0 sing 23 n n C23 C13 3C0 sing 24 n n C10 O11 3C0 sing 25 n n C02 O01 3C0 doub 26 n n C10 H1 3C0 sing 27 n n C10 H2 3C0 sing 28 n n C13 H3 3C0 sing 29 n n C15 H4 3C0 sing 30 n n C17 H5 3C0 sing 31 n n C20 H6 3C0 sing 32 n n C20 H7 3C0 sing 33 n n C20 H8 3C0 sing 34 n n C21 H9 3C0 sing 35 n n C21 H10 3C0 sing 36 n n C21 H11 3C0 sing 37 n n C22 H12 3C0 sing 38 n n C14 H13 3C0 sing 39 n n C14 H14 3C0 sing 40 n n C16 H15 3C0 sing 41 n n C23 H16 3C0 sing 42 n n C23 H17 3C0 sing 43 n n C03 H18 3C0 sing 44 n n O11 H19 3C0 sing 45 n n C05 H20 3C0 sing 46 n n C06 H21 3C0 sing 47 n n C07 H22 3C0 sing 48 n n C08 H23 3C0 sing 49 n n C09 H24 3C0 sing 50 n n # _atom_sites.entry_id 5YC8 _atom_sites.fract_transf_matrix[1][1] 0.021496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003364 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3C0 A 1 501 1107 3C0 3C0 . C 3 HG A 1 502 1 HG HG . D 3 HG A 1 503 2 HG HG . E 3 HG A 1 504 3 HG HG . F 4 HOH A 1 601 12 HOH HOH . F 4 HOH A 2 602 40 HOH HOH . F 4 HOH A 3 603 26 HOH HOH . F 4 HOH A 4 604 7 HOH HOH . F 4 HOH A 5 605 3 HOH HOH . F 4 HOH A 6 606 4 HOH HOH . F 4 HOH A 7 607 9 HOH HOH . F 4 HOH A 8 608 2 HOH HOH . F 4 HOH A 9 609 20 HOH HOH . F 4 HOH A 10 610 44 HOH HOH . F 4 HOH A 11 611 36 HOH HOH . F 4 HOH A 12 612 5 HOH HOH . F 4 HOH A 13 613 23 HOH HOH . F 4 HOH A 14 614 17 HOH HOH . F 4 HOH A 15 615 1 HOH HOH . F 4 HOH A 16 616 13 HOH HOH . F 4 HOH A 17 617 38 HOH HOH . F 4 HOH A 18 618 11 HOH HOH . F 4 HOH A 19 619 34 HOH HOH . F 4 HOH A 20 620 8 HOH HOH . F 4 HOH A 21 621 43 HOH HOH . F 4 HOH A 22 622 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 3C0 . . . B 2 185.728 24.189 526.979 1 39.51 ? C10 3C0 501 A 1 HETATM 2 C C13 3C0 . . . B 2 181.593 26.645 526.135 1 39.51 ? C13 3C0 501 A 1 HETATM 3 C C15 3C0 . . . B 2 181.087 29.107 525.572 1 39.51 ? C15 3C0 501 A 1 HETATM 4 C C17 3C0 . . . B 2 182.542 29.105 527.49 1 39.51 ? C17 3C0 501 A 1 HETATM 5 C C20 3C0 . . . B 2 180.001 30.709 527.113 1 39.51 ? C20 3C0 501 A 1 HETATM 6 C C21 3C0 . . . B 2 178.906 28.738 526.614 1 39.51 ? C21 3C0 501 A 1 HETATM 7 C C22 3C0 . . . B 2 181.105 28.586 527.755 1 39.51 ? C22 3C0 501 A 1 HETATM 8 N N19 3C0 . . . B 2 180.26 29.296 526.774 1 39.51 ? N19 3C0 501 A 1 HETATM 9 C C14 3C0 . . . B 2 181.042 27.638 525.091 1 39.51 ? C14 3C0 501 A 1 HETATM 10 C C16 3C0 . . . B 2 182.529 29.466 526.027 1 39.51 ? C16 3C0 501 A 1 HETATM 11 O O18 3C0 . . . B 2 182.776 30.48 527.053 1 39.51 ? O18 3C0 501 A 1 HETATM 12 C C23 3C0 . . . B 2 181.087 27.061 527.537 1 39.51 ? C23 3C0 501 A 1 HETATM 13 O O12 3C0 . . . B 2 183.037 26.539 526.031 1 39.51 ? O12 3C0 501 A 1 HETATM 14 C C02 3C0 . . . B 2 183.613 25.522 526.725 1 39.51 ? C02 3C0 501 A 1 HETATM 15 O O01 3C0 . . . B 2 183.001 24.61 527.281 1 39.51 ? O01 3C0 501 A 1 HETATM 16 C C03 3C0 . . . B 2 185.143 25.582 526.741 1 39.51 ? C03 3C0 501 A 1 HETATM 17 O O11 3C0 . . . B 2 185.358 23.332 525.895 1 39.51 ? O11 3C0 501 A 1 HETATM 18 C C04 3C0 . . . B 2 185.565 26.466 527.731 1 39.51 ? C04 3C0 501 A 1 HETATM 19 C C05 3C0 . . . B 2 186.071 27.71 527.372 1 39.51 ? C05 3C0 501 A 1 HETATM 20 C C06 3C0 . . . B 2 186.492 28.6 528.352 1 39.51 ? C06 3C0 501 A 1 HETATM 21 C C07 3C0 . . . B 2 186.408 28.247 529.693 1 39.51 ? C07 3C0 501 A 1 HETATM 22 C C08 3C0 . . . B 2 185.901 27.003 530.054 1 39.51 ? C08 3C0 501 A 1 HETATM 23 C C09 3C0 . . . B 2 185.479 26.112 529.073 1 39.51 ? C09 3C0 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #