data_5YCK # _model_server_result.job_id sRhphj8ozf4Rzm71KyFohg _model_server_result.datetime_utc '2024-11-22 17:58:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5YCK # _exptl.entry_id 5YCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 85.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUBIDIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YCK _cell.length_a 60.65 _cell.length_b 69.24 _cell.length_c 116.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B RB RB . A RB 501 1_555 G O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc2 B RB RB . A RB 501 1_555 G O HOH . A HOH 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? # _chem_comp.formula 'Rb 1' _chem_comp.formula_weight 85.468 _chem_comp.id RB _chem_comp.mon_nstd_flag . _chem_comp.name 'RUBIDIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YCK _atom_sites.fract_transf_matrix[1][1] 0.016488 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RB A 1 501 1 RB RB . C 2 RB A 1 502 2 RB RB . D 3 OLC A 1 503 1 OLC OLC . E 3 OLC A 1 504 6 OLC OLC . F 3 OLC A 1 505 7 OLC OLC . G 4 HOH A 1 601 1 HOH HOH . G 4 HOH A 2 602 29 HOH HOH . G 4 HOH A 3 603 73 HOH HOH . G 4 HOH A 4 604 31 HOH HOH . G 4 HOH A 5 605 80 HOH HOH . G 4 HOH A 6 606 37 HOH HOH . G 4 HOH A 7 607 22 HOH HOH . G 4 HOH A 8 608 53 HOH HOH . G 4 HOH A 9 609 16 HOH HOH . G 4 HOH A 10 610 46 HOH HOH . G 4 HOH A 11 611 49 HOH HOH . G 4 HOH A 12 612 3 HOH HOH . G 4 HOH A 13 613 32 HOH HOH . G 4 HOH A 14 614 72 HOH HOH . G 4 HOH A 15 615 44 HOH HOH . G 4 HOH A 16 616 5 HOH HOH . G 4 HOH A 17 617 40 HOH HOH . G 4 HOH A 18 618 25 HOH HOH . G 4 HOH A 19 619 9 HOH HOH . G 4 HOH A 20 620 24 HOH HOH . G 4 HOH A 21 621 23 HOH HOH . G 4 HOH A 22 622 4 HOH HOH . G 4 HOH A 23 623 27 HOH HOH . G 4 HOH A 24 624 17 HOH HOH . G 4 HOH A 25 625 67 HOH HOH . G 4 HOH A 26 626 11 HOH HOH . G 4 HOH A 27 627 39 HOH HOH . G 4 HOH A 28 628 51 HOH HOH . G 4 HOH A 29 629 18 HOH HOH . G 4 HOH A 30 630 15 HOH HOH . G 4 HOH A 31 631 34 HOH HOH . G 4 HOH A 32 632 50 HOH HOH . G 4 HOH A 33 633 42 HOH HOH . G 4 HOH A 34 634 36 HOH HOH . G 4 HOH A 35 635 7 HOH HOH . G 4 HOH A 36 636 41 HOH HOH . G 4 HOH A 37 637 19 HOH HOH . G 4 HOH A 38 638 43 HOH HOH . G 4 HOH A 39 639 13 HOH HOH . G 4 HOH A 40 640 52 HOH HOH . G 4 HOH A 41 641 6 HOH HOH . G 4 HOH A 42 642 26 HOH HOH . G 4 HOH A 43 643 28 HOH HOH . G 4 HOH A 44 644 75 HOH HOH . G 4 HOH A 45 645 20 HOH HOH . G 4 HOH A 46 646 56 HOH HOH . G 4 HOH A 47 647 69 HOH HOH . G 4 HOH A 48 648 33 HOH HOH . G 4 HOH A 49 649 8 HOH HOH . G 4 HOH A 50 650 2 HOH HOH . G 4 HOH A 51 651 54 HOH HOH . G 4 HOH A 52 652 48 HOH HOH . G 4 HOH A 53 653 30 HOH HOH . G 4 HOH A 54 654 10 HOH HOH . G 4 HOH A 55 655 66 HOH HOH . G 4 HOH A 56 656 57 HOH HOH . G 4 HOH A 57 657 77 HOH HOH . G 4 HOH A 58 658 61 HOH HOH . G 4 HOH A 59 659 45 HOH HOH . G 4 HOH A 60 660 71 HOH HOH . G 4 HOH A 61 661 64 HOH HOH . G 4 HOH A 62 662 12 HOH HOH . G 4 HOH A 63 663 81 HOH HOH . G 4 HOH A 64 664 60 HOH HOH . G 4 HOH A 65 665 59 HOH HOH . G 4 HOH A 66 666 83 HOH HOH . G 4 HOH A 67 667 82 HOH HOH . G 4 HOH A 68 668 76 HOH HOH . G 4 HOH A 69 669 47 HOH HOH . G 4 HOH A 70 670 70 HOH HOH . G 4 HOH A 71 671 62 HOH HOH . G 4 HOH A 72 672 58 HOH HOH . G 4 HOH A 73 673 65 HOH HOH . G 4 HOH A 74 674 79 HOH HOH . G 4 HOH A 75 675 21 HOH HOH . G 4 HOH A 76 676 14 HOH HOH . G 4 HOH A 77 677 35 HOH HOH . G 4 HOH A 78 678 84 HOH HOH . G 4 HOH A 79 679 74 HOH HOH . G 4 HOH A 80 680 63 HOH HOH . G 4 HOH A 81 681 38 HOH HOH . G 4 HOH A 82 682 55 HOH HOH . G 4 HOH A 83 683 78 HOH HOH . G 4 HOH A 84 684 68 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RB _atom_site.label_atom_id RB _atom_site.label_comp_id RB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 60.512 _atom_site.Cartn_y 3.249 _atom_site.Cartn_z 120.397 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RB _atom_site.auth_comp_id RB _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #