data_5YCP # _model_server_result.job_id cZUQbO-LJBXz-bUa6ttrig _model_server_result.datetime_utc '2024-11-14 10:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ycp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5YCP # _exptl.entry_id 5YCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.427 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-THIAZOLIDIINEDIONE,5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YCP _cell.length_a 130.809 _cell.length_b 53.133 _cell.length_c 54.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H19 N3 O3 S' _chem_comp.formula_weight 357.427 _chem_comp.id BRL _chem_comp.mon_nstd_flag . _chem_comp.name '2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BRL49653;ROSIGLITAZONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C2 BRL sing 70 n n S1 C5 BRL sing 71 n n O2 C2 BRL doub 72 n n O4 C4 BRL doub 73 n n O13 C10 BRL sing 74 n n O13 C14 BRL sing 75 n n N3 C2 BRL sing 76 n n N3 C4 BRL sing 77 n n N3 HN3 BRL sing 78 n n N16 C15 BRL sing 79 n n N16 C16 BRL sing 80 n n N16 C17 BRL sing 81 n n N18 C17 BRL doub 82 n y N18 C19 BRL sing 83 n y C4 C5 BRL sing 84 n n C5 C6 BRL sing 85 n n C5 H5 BRL sing 86 n n C6 C7 BRL sing 87 n n C6 H61 BRL sing 88 n n C6 H62 BRL sing 89 n n C7 C8 BRL doub 90 n y C7 C12 BRL sing 91 n y C8 C9 BRL sing 92 n y C8 H8 BRL sing 93 n n C9 C10 BRL doub 94 n y C9 H9 BRL sing 95 n n C10 C11 BRL sing 96 n y C11 C12 BRL doub 97 n y C11 H11 BRL sing 98 n n C12 H12 BRL sing 99 n n C14 C15 BRL sing 100 n n C14 H141 BRL sing 101 n n C14 H142 BRL sing 102 n n C15 H151 BRL sing 103 n n C15 H152 BRL sing 104 n n C16 H161 BRL sing 105 n n C16 H162 BRL sing 106 n n C16 H163 BRL sing 107 n n C17 C22 BRL sing 108 n y C19 C20 BRL doub 109 n y C19 H19 BRL sing 110 n n C20 C21 BRL sing 111 n y C20 H20 BRL sing 112 n n C21 C22 BRL doub 113 n y C21 H21 BRL sing 114 n n C22 H22 BRL sing 115 n n # _atom_sites.entry_id 5YCP _atom_sites.fract_transf_matrix[1][1] 0.007645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BRL A 1 501 1 BRL BRL . D 4 HOH A 1 601 45 HOH HOH . D 4 HOH A 2 602 59 HOH HOH . D 4 HOH A 3 603 39 HOH HOH . D 4 HOH A 4 604 70 HOH HOH . D 4 HOH A 5 605 15 HOH HOH . D 4 HOH A 6 606 17 HOH HOH . D 4 HOH A 7 607 67 HOH HOH . D 4 HOH A 8 608 42 HOH HOH . D 4 HOH A 9 609 18 HOH HOH . D 4 HOH A 10 610 23 HOH HOH . D 4 HOH A 11 611 74 HOH HOH . D 4 HOH A 12 612 1 HOH HOH . D 4 HOH A 13 613 16 HOH HOH . D 4 HOH A 14 614 9 HOH HOH . D 4 HOH A 15 615 11 HOH HOH . D 4 HOH A 16 616 56 HOH HOH . D 4 HOH A 17 617 4 HOH HOH . D 4 HOH A 18 618 54 HOH HOH . D 4 HOH A 19 619 64 HOH HOH . D 4 HOH A 20 620 8 HOH HOH . D 4 HOH A 21 621 69 HOH HOH . D 4 HOH A 22 622 20 HOH HOH . D 4 HOH A 23 623 66 HOH HOH . D 4 HOH A 24 624 37 HOH HOH . D 4 HOH A 25 625 43 HOH HOH . D 4 HOH A 26 626 27 HOH HOH . D 4 HOH A 27 627 2 HOH HOH . D 4 HOH A 28 628 12 HOH HOH . D 4 HOH A 29 629 5 HOH HOH . D 4 HOH A 30 630 83 HOH HOH . D 4 HOH A 31 631 30 HOH HOH . D 4 HOH A 32 632 26 HOH HOH . D 4 HOH A 33 633 31 HOH HOH . D 4 HOH A 34 634 47 HOH HOH . D 4 HOH A 35 635 52 HOH HOH . D 4 HOH A 36 636 10 HOH HOH . D 4 HOH A 37 637 65 HOH HOH . D 4 HOH A 38 638 13 HOH HOH . D 4 HOH A 39 639 48 HOH HOH . D 4 HOH A 40 640 28 HOH HOH . D 4 HOH A 41 641 6 HOH HOH . D 4 HOH A 42 642 82 HOH HOH . D 4 HOH A 43 643 19 HOH HOH . D 4 HOH A 44 644 40 HOH HOH . D 4 HOH A 45 645 7 HOH HOH . D 4 HOH A 46 646 38 HOH HOH . D 4 HOH A 47 647 68 HOH HOH . D 4 HOH A 48 648 25 HOH HOH . D 4 HOH A 49 649 50 HOH HOH . D 4 HOH A 50 650 44 HOH HOH . D 4 HOH A 51 651 71 HOH HOH . D 4 HOH A 52 652 72 HOH HOH . D 4 HOH A 53 653 76 HOH HOH . D 4 HOH A 54 654 3 HOH HOH . D 4 HOH A 55 655 29 HOH HOH . D 4 HOH A 56 656 21 HOH HOH . D 4 HOH A 57 657 22 HOH HOH . D 4 HOH A 58 658 57 HOH HOH . D 4 HOH A 59 659 24 HOH HOH . D 4 HOH A 60 660 63 HOH HOH . D 4 HOH A 61 661 73 HOH HOH . D 4 HOH A 62 662 61 HOH HOH . D 4 HOH A 63 663 41 HOH HOH . D 4 HOH A 64 664 78 HOH HOH . D 4 HOH A 65 665 62 HOH HOH . D 4 HOH A 66 666 60 HOH HOH . D 4 HOH A 67 667 81 HOH HOH . D 4 HOH A 68 668 49 HOH HOH . D 4 HOH A 69 669 33 HOH HOH . D 4 HOH A 70 670 34 HOH HOH . D 4 HOH A 71 671 32 HOH HOH . D 4 HOH A 72 672 14 HOH HOH . D 4 HOH A 73 673 58 HOH HOH . D 4 HOH A 74 674 77 HOH HOH . D 4 HOH A 75 675 84 HOH HOH . D 4 HOH A 76 676 46 HOH HOH . D 4 HOH A 77 677 85 HOH HOH . D 4 HOH A 78 678 80 HOH HOH . D 4 HOH A 79 679 53 HOH HOH . D 4 HOH A 80 680 75 HOH HOH . D 4 HOH A 81 681 35 HOH HOH . D 4 HOH A 82 682 55 HOH HOH . D 4 HOH A 83 683 36 HOH HOH . E 4 HOH B 1 801 51 HOH HOH . E 4 HOH B 2 802 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 BRL . . . C 3 19.419 -19.746 0.683 1 37.91 ? S1 BRL 501 A 1 HETATM 2 O O2 BRL . . . C 3 17.936 -18.523 2.413 1 43.83 ? O2 BRL 501 A 1 HETATM 3 O O4 BRL . . . C 3 18.216 -17.313 -1.87 1 35 ? O4 BRL 501 A 1 HETATM 4 O O13 BRL . . . C 3 22.34 -24.5 -2.851 1 34.83 ? O13 BRL 501 A 1 HETATM 5 N N3 BRL . . . C 3 17.93 -17.764 0.307 1 37.56 ? N3 BRL 501 A 1 HETATM 6 N N16 BRL . . . C 3 24.798 -25.641 -1.921 1 33.19 ? N16 BRL 501 A 1 HETATM 7 N N18 BRL . . . C 3 26.555 -24.156 -2.234 1 36.7 ? N18 BRL 501 A 1 HETATM 8 C C2 BRL . . . C 3 18.357 -18.579 1.264 1 38.98 ? C2 BRL 501 A 1 HETATM 9 C C4 BRL . . . C 3 18.479 -18.037 -0.909 1 38.12 ? C4 BRL 501 A 1 HETATM 10 C C5 BRL . . . C 3 19.331 -19.2 -1.025 1 38.53 ? C5 BRL 501 A 1 HETATM 11 C C6 BRL . . . C 3 18.689 -20.289 -1.906 1 35.23 ? C6 BRL 501 A 1 HETATM 12 C C7 BRL . . . C 3 19.642 -21.328 -2.179 1 34.03 ? C7 BRL 501 A 1 HETATM 13 C C8 BRL . . . C 3 20.716 -21.15 -3.08 1 32.03 ? C8 BRL 501 A 1 HETATM 14 C C9 BRL . . . C 3 21.629 -22.169 -3.335 1 32.46 ? C9 BRL 501 A 1 HETATM 15 C C10 BRL . . . C 3 21.503 -23.404 -2.682 1 35.51 ? C10 BRL 501 A 1 HETATM 16 C C11 BRL . . . C 3 20.439 -23.573 -1.803 1 33.73 ? C11 BRL 501 A 1 HETATM 17 C C12 BRL . . . C 3 19.525 -22.56 -1.555 1 34.58 ? C12 BRL 501 A 1 HETATM 18 C C14 BRL . . . C 3 23.594 -24.216 -3.438 1 33.66 ? C14 BRL 501 A 1 HETATM 19 C C15 BRL . . . C 3 24.425 -25.471 -3.354 1 33.88 ? C15 BRL 501 A 1 HETATM 20 C C16 BRL . . . C 3 23.953 -26.503 -1.044 1 33.97 ? C16 BRL 501 A 1 HETATM 21 C C17 BRL . . . C 3 25.839 -24.973 -1.396 1 36.35 ? C17 BRL 501 A 1 HETATM 22 C C19 BRL . . . C 3 27.661 -23.42 -1.819 1 36.77 ? C19 BRL 501 A 1 HETATM 23 C C20 BRL . . . C 3 28.053 -23.504 -0.494 1 37 ? C20 BRL 501 A 1 HETATM 24 C C21 BRL . . . C 3 27.349 -24.348 0.371 1 37.68 ? C21 BRL 501 A 1 HETATM 25 C C22 BRL . . . C 3 26.247 -25.09 -0.048 1 37.15 ? C22 BRL 501 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #