data_5YDO # _model_server_result.job_id jkcaeIv3iyEko94ukbL8Pw _model_server_result.datetime_utc '2025-03-06 08:53:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ydo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5YDO # _exptl.entry_id 5YDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YDO _cell.length_a 63.344 _cell.length_b 63.344 _cell.length_c 100.807 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 63.344 63.344 50.4035 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 5YDO _atom_sites.fract_transf_matrix[1][1] 0.015787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 303 SO4 SO4 . C 3 HOH A 1 501 386 HOH HOH . C 3 HOH A 2 502 402 HOH HOH . C 3 HOH A 3 503 374 HOH HOH . C 3 HOH A 4 504 410 HOH HOH . C 3 HOH A 5 505 377 HOH HOH . C 3 HOH A 6 506 343 HOH HOH . C 3 HOH A 7 507 362 HOH HOH . C 3 HOH A 8 508 340 HOH HOH . C 3 HOH A 9 509 306 HOH HOH . C 3 HOH A 10 510 397 HOH HOH . C 3 HOH A 11 511 314 HOH HOH . C 3 HOH A 12 512 391 HOH HOH . C 3 HOH A 13 513 409 HOH HOH . C 3 HOH A 14 514 309 HOH HOH . C 3 HOH A 15 515 408 HOH HOH . C 3 HOH A 16 516 367 HOH HOH . C 3 HOH A 17 517 347 HOH HOH . C 3 HOH A 18 518 404 HOH HOH . C 3 HOH A 19 519 308 HOH HOH . C 3 HOH A 20 520 368 HOH HOH . C 3 HOH A 21 521 334 HOH HOH . C 3 HOH A 22 522 349 HOH HOH . C 3 HOH A 23 523 324 HOH HOH . C 3 HOH A 24 524 305 HOH HOH . C 3 HOH A 25 525 319 HOH HOH . C 3 HOH A 26 526 369 HOH HOH . C 3 HOH A 27 527 407 HOH HOH . C 3 HOH A 28 528 364 HOH HOH . C 3 HOH A 29 529 330 HOH HOH . C 3 HOH A 30 530 316 HOH HOH . C 3 HOH A 31 531 366 HOH HOH . C 3 HOH A 32 532 307 HOH HOH . C 3 HOH A 33 533 323 HOH HOH . C 3 HOH A 34 534 401 HOH HOH . C 3 HOH A 35 535 338 HOH HOH . C 3 HOH A 36 536 344 HOH HOH . C 3 HOH A 37 537 345 HOH HOH . C 3 HOH A 38 538 395 HOH HOH . C 3 HOH A 39 539 337 HOH HOH . C 3 HOH A 40 540 346 HOH HOH . C 3 HOH A 41 541 341 HOH HOH . C 3 HOH A 42 542 348 HOH HOH . C 3 HOH A 43 543 310 HOH HOH . C 3 HOH A 44 544 311 HOH HOH . C 3 HOH A 45 545 331 HOH HOH . C 3 HOH A 46 546 365 HOH HOH . C 3 HOH A 47 547 326 HOH HOH . C 3 HOH A 48 548 322 HOH HOH . C 3 HOH A 49 549 313 HOH HOH . C 3 HOH A 50 550 317 HOH HOH . C 3 HOH A 51 551 336 HOH HOH . C 3 HOH A 52 552 381 HOH HOH . C 3 HOH A 53 553 370 HOH HOH . C 3 HOH A 54 554 396 HOH HOH . C 3 HOH A 55 555 399 HOH HOH . C 3 HOH A 56 556 360 HOH HOH . C 3 HOH A 57 557 315 HOH HOH . C 3 HOH A 58 558 403 HOH HOH . C 3 HOH A 59 559 304 HOH HOH . C 3 HOH A 60 560 355 HOH HOH . C 3 HOH A 61 561 376 HOH HOH . C 3 HOH A 62 562 327 HOH HOH . C 3 HOH A 63 563 353 HOH HOH . C 3 HOH A 64 564 342 HOH HOH . C 3 HOH A 65 565 393 HOH HOH . C 3 HOH A 66 566 388 HOH HOH . C 3 HOH A 67 567 356 HOH HOH . C 3 HOH A 68 568 378 HOH HOH . C 3 HOH A 69 569 332 HOH HOH . C 3 HOH A 70 570 383 HOH HOH . C 3 HOH A 71 571 312 HOH HOH . C 3 HOH A 72 572 359 HOH HOH . C 3 HOH A 73 573 350 HOH HOH . C 3 HOH A 74 574 389 HOH HOH . C 3 HOH A 75 575 328 HOH HOH . C 3 HOH A 76 576 320 HOH HOH . C 3 HOH A 77 577 358 HOH HOH . C 3 HOH A 78 578 363 HOH HOH . C 3 HOH A 79 579 384 HOH HOH . C 3 HOH A 80 580 373 HOH HOH . C 3 HOH A 81 581 400 HOH HOH . C 3 HOH A 82 582 318 HOH HOH . C 3 HOH A 83 583 392 HOH HOH . C 3 HOH A 84 584 354 HOH HOH . C 3 HOH A 85 585 335 HOH HOH . C 3 HOH A 86 586 385 HOH HOH . C 3 HOH A 87 587 339 HOH HOH . C 3 HOH A 88 588 357 HOH HOH . C 3 HOH A 89 589 387 HOH HOH . C 3 HOH A 90 590 372 HOH HOH . C 3 HOH A 91 591 375 HOH HOH . C 3 HOH A 92 592 333 HOH HOH . C 3 HOH A 93 593 380 HOH HOH . C 3 HOH A 94 594 394 HOH HOH . C 3 HOH A 95 595 361 HOH HOH . C 3 HOH A 96 596 405 HOH HOH . C 3 HOH A 97 597 329 HOH HOH . C 3 HOH A 98 598 411 HOH HOH . C 3 HOH A 99 599 371 HOH HOH . C 3 HOH A 100 600 351 HOH HOH . C 3 HOH A 101 601 379 HOH HOH . C 3 HOH A 102 602 325 HOH HOH . C 3 HOH A 103 603 382 HOH HOH . C 3 HOH A 104 604 398 HOH HOH . C 3 HOH A 105 605 321 HOH HOH . C 3 HOH A 106 606 390 HOH HOH . C 3 HOH A 107 607 352 HOH HOH . C 3 HOH A 108 608 406 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 15.529 9.992 23.737 1 29.22 ? S SO4 401 A 1 HETATM 2 O O1 SO4 . . . B 2 16.528 11.014 23.446 1 22.95 ? O1 SO4 401 A 1 HETATM 3 O O2 SO4 . . . B 2 14.803 9.691 22.507 1 32.03 ? O2 SO4 401 A 1 HETATM 4 O O3 SO4 . . . B 2 16.16 8.776 24.24 1 27.93 ? O3 SO4 401 A 1 HETATM 5 O O4 SO4 . . . B 2 14.612 10.51 24.751 1 31.56 ? O4 SO4 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #