data_5YEC
#
_model_server_result.job_id            VWY-jvqOeF0njcxsWOZYPA 
_model_server_result.datetime_utc      '2024-10-19 09:32:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yec 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":703}' 
#
_entry.id    5YEC 
#
_exptl.entry_id    5YEC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YEC 
_cell.length_a            138.995 
_cell.length_b            138.995 
_cell.length_c            134.368 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YEC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 148 A ASP 438 1_555 G MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc2 A SG CYS 195 A CYS 485 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc3 A SG CYS 198 A CYS 488 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc4 A SG CYS 279 A CYS 569 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc5 A SG CYS 282 A CYS 572 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc6 F O1G ATP . A ATP 702 1_555 G MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc7 F O1B ATP . A ATP 702 1_555 G MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc8 F O1A ATP . A ATP 702 1_555 G MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc9 C OD2 ASP 148 C ASP 438 1_555 J MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc10 C SG CYS 195 C CYS 485 1_555 H ZN ZN . C ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc11 C SG CYS 198 C CYS 488 1_555 H ZN ZN . C ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc12 C SG CYS 279 C CYS 569 1_555 H ZN ZN . C ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc13 C SG CYS 282 C CYS 572 1_555 H ZN ZN . C ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc14 I O1G ATP . C ATP 702 1_555 J MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc15 I O1B ATP . C ATP 702 1_555 J MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc16 I O2A ATP . C ATP 702 1_555 J MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YEC 
_atom_sites.fract_transf_matrix[1][1]    0.007195 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007442 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 701 701 ZN ZN . 
F 4 ATP A 1 702 702 ATP ATP . 
G 5 MG A 1 703 703 MG MG . 
H 3 ZN C 1 701 701 ZN ZN . 
I 4 ATP C 1 702 702 ATP ATP . 
J 5 MG C 1 703 703 MG MG . 
K 6 HOH A 1 801 166 HOH HOH . 
K 6 HOH A 2 802 129 HOH HOH . 
K 6 HOH A 3 803 20 HOH HOH . 
K 6 HOH A 4 804 92 HOH HOH . 
K 6 HOH A 5 805 30 HOH HOH . 
K 6 HOH A 6 806 87 HOH HOH . 
K 6 HOH A 7 807 80 HOH HOH . 
K 6 HOH A 8 808 101 HOH HOH . 
K 6 HOH A 9 809 151 HOH HOH . 
K 6 HOH A 10 810 158 HOH HOH . 
K 6 HOH A 11 811 1 HOH HOH . 
K 6 HOH A 12 812 142 HOH HOH . 
K 6 HOH A 13 813 16 HOH HOH . 
K 6 HOH A 14 814 111 HOH HOH . 
K 6 HOH A 15 815 24 HOH HOH . 
K 6 HOH A 16 816 153 HOH HOH . 
K 6 HOH A 17 817 117 HOH HOH . 
K 6 HOH A 18 818 32 HOH HOH . 
K 6 HOH A 19 819 77 HOH HOH . 
K 6 HOH A 20 820 13 HOH HOH . 
K 6 HOH A 21 821 78 HOH HOH . 
K 6 HOH A 22 822 140 HOH HOH . 
K 6 HOH A 23 823 31 HOH HOH . 
K 6 HOH A 24 824 105 HOH HOH . 
K 6 HOH A 25 825 21 HOH HOH . 
K 6 HOH A 26 826 90 HOH HOH . 
K 6 HOH A 27 827 6 HOH HOH . 
K 6 HOH A 28 828 98 HOH HOH . 
K 6 HOH A 29 829 91 HOH HOH . 
K 6 HOH A 30 830 25 HOH HOH . 
K 6 HOH A 31 831 2 HOH HOH . 
K 6 HOH A 32 832 134 HOH HOH . 
K 6 HOH A 33 833 11 HOH HOH . 
K 6 HOH A 34 834 131 HOH HOH . 
K 6 HOH A 35 835 110 HOH HOH . 
K 6 HOH A 36 836 18 HOH HOH . 
K 6 HOH A 37 837 109 HOH HOH . 
K 6 HOH A 38 838 10 HOH HOH . 
K 6 HOH A 39 839 17 HOH HOH . 
K 6 HOH A 40 840 143 HOH HOH . 
K 6 HOH A 41 841 3 HOH HOH . 
K 6 HOH A 42 842 23 HOH HOH . 
K 6 HOH A 43 843 136 HOH HOH . 
K 6 HOH A 44 844 5 HOH HOH . 
K 6 HOH A 45 845 152 HOH HOH . 
K 6 HOH A 46 846 4 HOH HOH . 
K 6 HOH A 47 847 9 HOH HOH . 
K 6 HOH A 48 848 86 HOH HOH . 
K 6 HOH A 49 849 19 HOH HOH . 
K 6 HOH A 50 850 93 HOH HOH . 
K 6 HOH A 51 851 104 HOH HOH . 
K 6 HOH A 52 852 157 HOH HOH . 
K 6 HOH A 53 853 160 HOH HOH . 
K 6 HOH A 54 854 26 HOH HOH . 
K 6 HOH A 55 855 148 HOH HOH . 
K 6 HOH A 56 856 15 HOH HOH . 
K 6 HOH A 57 857 12 HOH HOH . 
K 6 HOH A 58 858 36 HOH HOH . 
K 6 HOH A 59 859 79 HOH HOH . 
K 6 HOH A 60 860 120 HOH HOH . 
K 6 HOH A 61 861 82 HOH HOH . 
K 6 HOH A 62 862 96 HOH HOH . 
K 6 HOH A 63 863 97 HOH HOH . 
K 6 HOH A 64 864 132 HOH HOH . 
K 6 HOH A 65 865 124 HOH HOH . 
K 6 HOH A 66 866 100 HOH HOH . 
K 6 HOH A 67 867 149 HOH HOH . 
K 6 HOH A 68 868 7 HOH HOH . 
K 6 HOH A 69 869 22 HOH HOH . 
K 6 HOH A 70 870 121 HOH HOH . 
K 6 HOH A 71 871 123 HOH HOH . 
K 6 HOH A 72 872 28 HOH HOH . 
K 6 HOH A 73 873 14 HOH HOH . 
K 6 HOH A 74 874 162 HOH HOH . 
K 6 HOH A 75 875 138 HOH HOH . 
K 6 HOH A 76 876 35 HOH HOH . 
K 6 HOH A 77 877 37 HOH HOH . 
K 6 HOH A 78 878 102 HOH HOH . 
K 6 HOH A 79 879 115 HOH HOH . 
K 6 HOH A 80 880 106 HOH HOH . 
K 6 HOH A 81 881 168 HOH HOH . 
K 6 HOH A 82 882 75 HOH HOH . 
K 6 HOH A 83 883 113 HOH HOH . 
K 6 HOH A 84 884 33 HOH HOH . 
K 6 HOH A 85 885 126 HOH HOH . 
K 6 HOH A 86 886 112 HOH HOH . 
K 6 HOH A 87 887 29 HOH HOH . 
K 6 HOH A 88 888 34 HOH HOH . 
K 6 HOH A 89 889 27 HOH HOH . 
K 6 HOH A 90 890 85 HOH HOH . 
K 6 HOH A 91 891 107 HOH HOH . 
K 6 HOH A 92 892 146 HOH HOH . 
K 6 HOH A 93 893 128 HOH HOH . 
K 6 HOH A 94 894 150 HOH HOH . 
K 6 HOH A 95 895 170 HOH HOH . 
L 6 HOH B 1 201 108 HOH HOH . 
L 6 HOH B 2 202 167 HOH HOH . 
M 6 HOH C 1 801 165 HOH HOH . 
M 6 HOH C 2 802 125 HOH HOH . 
M 6 HOH C 3 803 94 HOH HOH . 
M 6 HOH C 4 804 81 HOH HOH . 
M 6 HOH C 5 805 84 HOH HOH . 
M 6 HOH C 6 806 83 HOH HOH . 
M 6 HOH C 7 807 65 HOH HOH . 
M 6 HOH C 8 808 161 HOH HOH . 
M 6 HOH C 9 809 72 HOH HOH . 
M 6 HOH C 10 810 41 HOH HOH . 
M 6 HOH C 11 811 50 HOH HOH . 
M 6 HOH C 12 812 73 HOH HOH . 
M 6 HOH C 13 813 40 HOH HOH . 
M 6 HOH C 14 814 135 HOH HOH . 
M 6 HOH C 15 815 64 HOH HOH . 
M 6 HOH C 16 816 133 HOH HOH . 
M 6 HOH C 17 817 60 HOH HOH . 
M 6 HOH C 18 818 159 HOH HOH . 
M 6 HOH C 19 819 47 HOH HOH . 
M 6 HOH C 20 820 44 HOH HOH . 
M 6 HOH C 21 821 54 HOH HOH . 
M 6 HOH C 22 822 43 HOH HOH . 
M 6 HOH C 23 823 130 HOH HOH . 
M 6 HOH C 24 824 103 HOH HOH . 
M 6 HOH C 25 825 42 HOH HOH . 
M 6 HOH C 26 826 67 HOH HOH . 
M 6 HOH C 27 827 163 HOH HOH . 
M 6 HOH C 28 828 39 HOH HOH . 
M 6 HOH C 29 829 71 HOH HOH . 
M 6 HOH C 30 830 154 HOH HOH . 
M 6 HOH C 31 831 74 HOH HOH . 
M 6 HOH C 32 832 137 HOH HOH . 
M 6 HOH C 33 833 46 HOH HOH . 
M 6 HOH C 34 834 57 HOH HOH . 
M 6 HOH C 35 835 38 HOH HOH . 
M 6 HOH C 36 836 127 HOH HOH . 
M 6 HOH C 37 837 49 HOH HOH . 
M 6 HOH C 38 838 70 HOH HOH . 
M 6 HOH C 39 839 8 HOH HOH . 
M 6 HOH C 40 840 51 HOH HOH . 
M 6 HOH C 41 841 88 HOH HOH . 
M 6 HOH C 42 842 119 HOH HOH . 
M 6 HOH C 43 843 45 HOH HOH . 
M 6 HOH C 44 844 69 HOH HOH . 
M 6 HOH C 45 845 58 HOH HOH . 
M 6 HOH C 46 846 66 HOH HOH . 
M 6 HOH C 47 847 52 HOH HOH . 
M 6 HOH C 48 848 139 HOH HOH . 
M 6 HOH C 49 849 114 HOH HOH . 
M 6 HOH C 50 850 55 HOH HOH . 
M 6 HOH C 51 851 164 HOH HOH . 
M 6 HOH C 52 852 99 HOH HOH . 
M 6 HOH C 53 853 53 HOH HOH . 
M 6 HOH C 54 854 48 HOH HOH . 
M 6 HOH C 55 855 63 HOH HOH . 
M 6 HOH C 56 856 156 HOH HOH . 
M 6 HOH C 57 857 141 HOH HOH . 
M 6 HOH C 58 858 118 HOH HOH . 
M 6 HOH C 59 859 174 HOH HOH . 
M 6 HOH C 60 860 155 HOH HOH . 
M 6 HOH C 61 861 122 HOH HOH . 
M 6 HOH C 62 862 59 HOH HOH . 
M 6 HOH C 63 863 61 HOH HOH . 
M 6 HOH C 64 864 62 HOH HOH . 
M 6 HOH C 65 865 173 HOH HOH . 
M 6 HOH C 66 866 171 HOH HOH . 
M 6 HOH C 67 867 116 HOH HOH . 
M 6 HOH C 68 868 76 HOH HOH . 
M 6 HOH C 69 869 56 HOH HOH . 
M 6 HOH C 70 870 95 HOH HOH . 
M 6 HOH C 71 871 89 HOH HOH . 
M 6 HOH C 72 872 172 HOH HOH . 
M 6 HOH C 73 873 145 HOH HOH . 
M 6 HOH C 74 874 147 HOH HOH . 
M 6 HOH C 75 875 169 HOH HOH . 
M 6 HOH C 76 876 68 HOH HOH . 
M 6 HOH C 77 877 144 HOH HOH . 
N 6 HOH D 1 201 175 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -21.086 
_atom_site.Cartn_y               -30.436 
_atom_site.Cartn_z               -14.87 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.57 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           703 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#