data_5YEI # _model_server_result.job_id L4r3bBwO7m5DLvTa3PpVmA _model_server_result.datetime_utc '2024-11-09 23:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 5YEI # _exptl.entry_id 5YEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 119.119 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description THREONINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.29 _cell.angle_gamma 90 _cell.entry_id 5YEI _cell.length_a 82.459 _cell.length_b 171.793 _cell.length_c 88.932 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,G,I,J,M,N,S,T,X,Y,AA,DA 1 1 C,E,F,H,K,L,O,P,Q,R,U,V,W,Z,BA,CA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 R N N ? 3 T N N # _chem_comp.formula 'C4 H9 N O3' _chem_comp.formula_weight 119.119 _chem_comp.id THR _chem_comp.mon_nstd_flag y _chem_comp.name THREONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA THR sing 303 n n N H THR sing 304 n n N H2 THR sing 305 n n CA C THR sing 306 n n CA CB THR sing 307 n n CA HA THR sing 308 n n C O THR doub 309 n n C OXT THR sing 310 n n CB OG1 THR sing 311 n n CB CG2 THR sing 312 n n CB HB THR sing 313 n n OG1 HG1 THR sing 314 n n CG2 HG21 THR sing 315 n n CG2 HG22 THR sing 316 n n CG2 HG23 THR sing 317 n n OXT HXT THR sing 318 n n # _atom_sites.entry_id 5YEI _atom_sites.fract_transf_matrix[1][1] 0.012127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 THR D 1 501 2 THR THR . J 3 THR B 1 501 8 THR THR . K 3 THR F 1 501 5 THR THR . L 3 THR F 1 502 6 THR THR . M 3 THR C 1 501 1 THR THR . N 4 LYS C 1 502 2 LYS LYS . O 3 THR H 1 501 4 THR THR . P 5 GOL G 1 501 1 GOL GOL . Q 4 LYS G 1 502 3 LYS LYS . R 3 THR G 1 503 3 THR THR . S 4 LYS A 1 501 5 LYS LYS . T 3 THR A 1 502 7 THR THR . U 5 GOL E 1 501 2 GOL GOL . V 5 GOL E 1 502 3 GOL GOL . W 4 LYS E 1 503 4 LYS LYS . X 6 HOH D 1 601 220 HOH HOH . X 6 HOH D 2 602 185 HOH HOH . X 6 HOH D 3 603 137 HOH HOH . X 6 HOH D 4 604 13 HOH HOH . X 6 HOH D 5 605 2 HOH HOH . X 6 HOH D 6 606 22 HOH HOH . X 6 HOH D 7 607 10 HOH HOH . X 6 HOH D 8 608 70 HOH HOH . X 6 HOH D 9 609 153 HOH HOH . X 6 HOH D 10 610 292 HOH HOH . X 6 HOH D 11 611 273 HOH HOH . X 6 HOH D 12 612 270 HOH HOH . X 6 HOH D 13 613 268 HOH HOH . Y 6 HOH B 1 601 25 HOH HOH . Y 6 HOH B 2 602 19 HOH HOH . Y 6 HOH B 3 603 21 HOH HOH . Y 6 HOH B 4 604 103 HOH HOH . Y 6 HOH B 5 605 100 HOH HOH . Y 6 HOH B 6 606 216 HOH HOH . Y 6 HOH B 7 607 279 HOH HOH . Y 6 HOH B 8 608 256 HOH HOH . Y 6 HOH B 9 609 287 HOH HOH . Y 6 HOH B 10 610 291 HOH HOH . Y 6 HOH B 11 611 248 HOH HOH . Y 6 HOH B 12 612 277 HOH HOH . Y 6 HOH B 13 613 257 HOH HOH . Z 6 HOH F 1 601 33 HOH HOH . Z 6 HOH F 2 602 130 HOH HOH . Z 6 HOH F 3 603 47 HOH HOH . Z 6 HOH F 4 604 44 HOH HOH . Z 6 HOH F 5 605 94 HOH HOH . Z 6 HOH F 6 606 180 HOH HOH . Z 6 HOH F 7 607 235 HOH HOH . AA 6 HOH C 1 601 8 HOH HOH . AA 6 HOH C 2 602 247 HOH HOH . AA 6 HOH C 3 603 14 HOH HOH . AA 6 HOH C 4 604 206 HOH HOH . AA 6 HOH C 5 605 63 HOH HOH . AA 6 HOH C 6 606 23 HOH HOH . AA 6 HOH C 7 607 29 HOH HOH . AA 6 HOH C 8 608 93 HOH HOH . AA 6 HOH C 9 609 50 HOH HOH . AA 6 HOH C 10 610 201 HOH HOH . AA 6 HOH C 11 611 62 HOH HOH . AA 6 HOH C 12 612 31 HOH HOH . AA 6 HOH C 13 613 240 HOH HOH . AA 6 HOH C 14 614 46 HOH HOH . AA 6 HOH C 15 615 53 HOH HOH . AA 6 HOH C 16 616 161 HOH HOH . AA 6 HOH C 17 617 283 HOH HOH . AA 6 HOH C 18 618 241 HOH HOH . AA 6 HOH C 19 619 275 HOH HOH . AA 6 HOH C 20 620 183 HOH HOH . AA 6 HOH C 21 621 258 HOH HOH . AA 6 HOH C 22 622 230 HOH HOH . AA 6 HOH C 23 623 218 HOH HOH . AA 6 HOH C 24 624 167 HOH HOH . AA 6 HOH C 25 625 264 HOH HOH . AA 6 HOH C 26 626 250 HOH HOH . AA 6 HOH C 27 627 227 HOH HOH . AA 6 HOH C 28 628 226 HOH HOH . AA 6 HOH C 29 629 271 HOH HOH . AA 6 HOH C 30 630 225 HOH HOH . AA 6 HOH C 31 631 224 HOH HOH . AA 6 HOH C 32 632 242 HOH HOH . AA 6 HOH C 33 633 239 HOH HOH . AA 6 HOH C 34 634 280 HOH HOH . AA 6 HOH C 35 635 267 HOH HOH . AA 6 HOH C 36 636 286 HOH HOH . BA 6 HOH H 1 601 67 HOH HOH . BA 6 HOH H 2 602 244 HOH HOH . BA 6 HOH H 3 603 181 HOH HOH . BA 6 HOH H 4 604 190 HOH HOH . BA 6 HOH H 5 605 178 HOH HOH . BA 6 HOH H 6 606 182 HOH HOH . BA 6 HOH H 7 607 147 HOH HOH . BA 6 HOH H 8 608 118 HOH HOH . BA 6 HOH H 9 609 278 HOH HOH . BA 6 HOH H 10 610 272 HOH HOH . CA 6 HOH G 1 601 17 HOH HOH . CA 6 HOH G 2 602 27 HOH HOH . CA 6 HOH G 3 603 66 HOH HOH . CA 6 HOH G 4 604 55 HOH HOH . CA 6 HOH G 5 605 87 HOH HOH . CA 6 HOH G 6 606 7 HOH HOH . CA 6 HOH G 7 607 102 HOH HOH . CA 6 HOH G 8 608 120 HOH HOH . CA 6 HOH G 9 609 24 HOH HOH . CA 6 HOH G 10 610 56 HOH HOH . CA 6 HOH G 11 611 131 HOH HOH . CA 6 HOH G 12 612 79 HOH HOH . CA 6 HOH G 13 613 64 HOH HOH . CA 6 HOH G 14 614 54 HOH HOH . CA 6 HOH G 15 615 162 HOH HOH . CA 6 HOH G 16 616 91 HOH HOH . CA 6 HOH G 17 617 45 HOH HOH . CA 6 HOH G 18 618 78 HOH HOH . CA 6 HOH G 19 619 3 HOH HOH . CA 6 HOH G 20 620 159 HOH HOH . CA 6 HOH G 21 621 157 HOH HOH . CA 6 HOH G 22 622 228 HOH HOH . CA 6 HOH G 23 623 260 HOH HOH . CA 6 HOH G 24 624 203 HOH HOH . CA 6 HOH G 25 625 126 HOH HOH . CA 6 HOH G 26 626 234 HOH HOH . CA 6 HOH G 27 627 284 HOH HOH . CA 6 HOH G 28 628 229 HOH HOH . CA 6 HOH G 29 629 274 HOH HOH . CA 6 HOH G 30 630 261 HOH HOH . CA 6 HOH G 31 631 265 HOH HOH . CA 6 HOH G 32 632 221 HOH HOH . CA 6 HOH G 33 633 282 HOH HOH . CA 6 HOH G 34 634 288 HOH HOH . DA 6 HOH A 1 601 177 HOH HOH . DA 6 HOH A 2 602 233 HOH HOH . DA 6 HOH A 3 603 246 HOH HOH . DA 6 HOH A 4 604 58 HOH HOH . DA 6 HOH A 5 605 18 HOH HOH . DA 6 HOH A 6 606 9 HOH HOH . DA 6 HOH A 7 607 32 HOH HOH . DA 6 HOH A 8 608 86 HOH HOH . DA 6 HOH A 9 609 72 HOH HOH . DA 6 HOH A 10 610 252 HOH HOH . DA 6 HOH A 11 611 211 HOH HOH . DA 6 HOH A 12 612 71 HOH HOH . DA 6 HOH A 13 613 61 HOH HOH . DA 6 HOH A 14 614 243 HOH HOH . DA 6 HOH A 15 615 35 HOH HOH . DA 6 HOH A 16 616 89 HOH HOH . DA 6 HOH A 17 617 96 HOH HOH . DA 6 HOH A 18 618 204 HOH HOH . DA 6 HOH A 19 619 43 HOH HOH . DA 6 HOH A 20 620 48 HOH HOH . DA 6 HOH A 21 621 69 HOH HOH . DA 6 HOH A 22 622 237 HOH HOH . DA 6 HOH A 23 623 136 HOH HOH . DA 6 HOH A 24 624 90 HOH HOH . DA 6 HOH A 25 625 253 HOH HOH . DA 6 HOH A 26 626 76 HOH HOH . DA 6 HOH A 27 627 5 HOH HOH . DA 6 HOH A 28 628 4 HOH HOH . DA 6 HOH A 29 629 160 HOH HOH . DA 6 HOH A 30 630 259 HOH HOH . DA 6 HOH A 31 631 217 HOH HOH . DA 6 HOH A 32 632 245 HOH HOH . DA 6 HOH A 33 633 236 HOH HOH . DA 6 HOH A 34 634 293 HOH HOH . DA 6 HOH A 35 635 138 HOH HOH . DA 6 HOH A 36 636 219 HOH HOH . DA 6 HOH A 37 637 285 HOH HOH . DA 6 HOH A 38 638 289 HOH HOH . DA 6 HOH A 39 639 290 HOH HOH . DA 6 HOH A 40 640 294 HOH HOH . DA 6 HOH A 41 641 223 HOH HOH . DA 6 HOH A 42 642 238 HOH HOH . EA 6 HOH E 1 601 40 HOH HOH . EA 6 HOH E 2 602 34 HOH HOH . EA 6 HOH E 3 603 11 HOH HOH . EA 6 HOH E 4 604 52 HOH HOH . EA 6 HOH E 5 605 28 HOH HOH . EA 6 HOH E 6 606 222 HOH HOH . EA 6 HOH E 7 607 38 HOH HOH . EA 6 HOH E 8 608 232 HOH HOH . EA 6 HOH E 9 609 97 HOH HOH . EA 6 HOH E 10 610 262 HOH HOH . EA 6 HOH E 11 611 269 HOH HOH . EA 6 HOH E 12 612 254 HOH HOH . EA 6 HOH E 13 613 281 HOH HOH . EA 6 HOH E 14 614 231 HOH HOH . EA 6 HOH E 15 615 249 HOH HOH . EA 6 HOH E 16 616 276 HOH HOH . EA 6 HOH E 17 617 263 HOH HOH . EA 6 HOH E 18 618 255 HOH HOH . EA 6 HOH E 19 619 174 HOH HOH . EA 6 HOH E 20 620 266 HOH HOH . EA 6 HOH E 21 621 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N THR . . . J 3 57.676 -78.944 -20.539 1 39.47 ? N THR 501 B 1 HETATM 2 C CA THR . . . J 3 57.007 -78.619 -21.733 1 47.15 ? CA THR 501 B 1 HETATM 3 C C THR . . . J 3 57.444 -77.236 -22.095 1 49.25 ? C THR 501 B 1 HETATM 4 O O THR . . . J 3 56.877 -76.603 -23.004 1 44.23 ? O THR 501 B 1 HETATM 5 C CB THR . . . J 3 55.535 -78.711 -21.506 1 43.06 ? CB THR 501 B 1 HETATM 6 O OG1 THR . . . J 3 55.245 -77.939 -20.387 1 42.78 ? OG1 THR 501 B 1 HETATM 7 C CG2 THR . . . J 3 55.162 -80.053 -21.155 1 38.81 ? CG2 THR 501 B 1 HETATM 8 O OXT THR . . . J 3 58.416 -76.842 -21.42 1 53.45 -1 OXT THR 501 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #