data_5YF4
#
_model_server_result.job_id            4DsdvjNKac_WOG9_gIqqJQ 
_model_server_result.datetime_utc      '2025-03-12 04:19:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yf4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5YF4 
#
_exptl.entry_id    5YF4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          122.67 
_cell.angle_gamma         90 
_cell.entry_id            5YF4 
_cell.length_a            88.469 
_cell.length_b            33.997 
_cell.length_c            61.023 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YF4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -32.940193 0 51.368767 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C PHE 7 B PHE 326 1_555 B N TPO 8 B TPO 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C TPO 8 B TPO 327 1_555 B N TPO 9 B TPO 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 B C TPO 9 B TPO 328 1_555 B N VAL 10 B VAL 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
metalc ? metalc1 A SG CYS 44 A CYS 92 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A SG CYS 49 A CYS 97 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 A SG CYS 62 A CYS 110 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc4 A NE2 HIS 65 A HIS 113 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc5 A SG CYS 71 A CYS 119 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 A ND1 HIS 79 A HIS 127 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc7 A NE2 HIS 121 A HIS 169 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc8 A NE2 HIS 126 A HIS 174 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YF4 
_atom_sites.fract_transf_matrix[1][1]    0.011303 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007247 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029414 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 301 1 ZN ZN . 
D 3 ZN A 1 302 2 ZN ZN . 
E 4 HOH A 1 401 22 HOH HOH . 
E 4 HOH A 2 402 30 HOH HOH . 
E 4 HOH A 3 403 25 HOH HOH . 
E 4 HOH A 4 404 71 HOH HOH . 
E 4 HOH A 5 405 65 HOH HOH . 
E 4 HOH A 6 406 34 HOH HOH . 
E 4 HOH A 7 407 57 HOH HOH . 
E 4 HOH A 8 408 13 HOH HOH . 
E 4 HOH A 9 409 66 HOH HOH . 
E 4 HOH A 10 410 12 HOH HOH . 
E 4 HOH A 11 411 10 HOH HOH . 
E 4 HOH A 12 412 11 HOH HOH . 
E 4 HOH A 13 413 3 HOH HOH . 
E 4 HOH A 14 414 46 HOH HOH . 
E 4 HOH A 15 415 5 HOH HOH . 
E 4 HOH A 16 416 2 HOH HOH . 
E 4 HOH A 17 417 18 HOH HOH . 
E 4 HOH A 18 418 35 HOH HOH . 
E 4 HOH A 19 419 39 HOH HOH . 
E 4 HOH A 20 420 48 HOH HOH . 
E 4 HOH A 21 421 40 HOH HOH . 
E 4 HOH A 22 422 43 HOH HOH . 
E 4 HOH A 23 423 29 HOH HOH . 
E 4 HOH A 24 424 19 HOH HOH . 
E 4 HOH A 25 425 74 HOH HOH . 
E 4 HOH A 26 426 7 HOH HOH . 
E 4 HOH A 27 427 6 HOH HOH . 
E 4 HOH A 28 428 55 HOH HOH . 
E 4 HOH A 29 429 14 HOH HOH . 
E 4 HOH A 30 430 17 HOH HOH . 
E 4 HOH A 31 431 44 HOH HOH . 
E 4 HOH A 32 432 4 HOH HOH . 
E 4 HOH A 33 433 20 HOH HOH . 
E 4 HOH A 34 434 59 HOH HOH . 
E 4 HOH A 35 435 62 HOH HOH . 
E 4 HOH A 36 436 47 HOH HOH . 
E 4 HOH A 37 437 50 HOH HOH . 
E 4 HOH A 38 438 42 HOH HOH . 
E 4 HOH A 39 439 21 HOH HOH . 
E 4 HOH A 40 440 56 HOH HOH . 
E 4 HOH A 41 441 49 HOH HOH . 
E 4 HOH A 42 442 61 HOH HOH . 
E 4 HOH A 43 443 28 HOH HOH . 
E 4 HOH A 44 444 15 HOH HOH . 
E 4 HOH A 45 445 1 HOH HOH . 
E 4 HOH A 46 446 54 HOH HOH . 
E 4 HOH A 47 447 38 HOH HOH . 
E 4 HOH A 48 448 37 HOH HOH . 
E 4 HOH A 49 449 8 HOH HOH . 
E 4 HOH A 50 450 24 HOH HOH . 
E 4 HOH A 51 451 41 HOH HOH . 
E 4 HOH A 52 452 75 HOH HOH . 
E 4 HOH A 53 453 73 HOH HOH . 
E 4 HOH A 54 454 36 HOH HOH . 
E 4 HOH A 55 455 67 HOH HOH . 
E 4 HOH A 56 456 60 HOH HOH . 
E 4 HOH A 57 457 72 HOH HOH . 
E 4 HOH A 58 458 33 HOH HOH . 
E 4 HOH A 59 459 16 HOH HOH . 
E 4 HOH A 60 460 53 HOH HOH . 
E 4 HOH A 61 461 58 HOH HOH . 
E 4 HOH A 62 462 52 HOH HOH . 
E 4 HOH A 63 463 51 HOH HOH . 
E 4 HOH A 64 464 45 HOH HOH . 
E 4 HOH A 65 465 68 HOH HOH . 
E 4 HOH A 66 466 26 HOH HOH . 
E 4 HOH A 67 467 70 HOH HOH . 
E 4 HOH A 68 468 64 HOH HOH . 
F 4 HOH B 1 401 63 HOH HOH . 
F 4 HOH B 2 402 69 HOH HOH . 
F 4 HOH B 3 403 27 HOH HOH . 
F 4 HOH B 4 404 23 HOH HOH . 
F 4 HOH B 5 405 31 HOH HOH . 
F 4 HOH B 6 406 9 HOH HOH . 
F 4 HOH B 7 407 32 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -1.35 
_atom_site.Cartn_y               4 
_atom_site.Cartn_z               24.811 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#