data_5YG7 # _model_server_result.job_id hb9mXhCLM18yCTMKdIb2Kw _model_server_result.datetime_utc '2024-11-16 16:51:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":402}' # _entry.id 5YG7 # _exptl.entry_id 5YG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YG7 _cell.length_a 99.16 _cell.length_b 99.16 _cell.length_c 257.041 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_657 -x+y+1,y,-z+7/3 -1 0 0 0 1 0 0 0 -1 99.16 0 599.762333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 193 A MET 193 1_555 E K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc2 A O LYS 194 A LYS 194 1_555 E K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc3 A O THR 196 A THR 196 1_555 E K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc4 E K K . A K 402 1_555 P O HOH . A HOH 544 5_657 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc5 B O MET 193 B MET 193 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.247 ? metalc ? metalc6 B O LYS 194 B LYS 194 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? metalc ? metalc7 B O THR 196 B THR 196 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc8 Q O HOH . B HOH 553 5_657 M K K . C K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc9 C O MET 193 C MET 193 1_555 M K K . C K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc10 C O LYS 194 C LYS 194 1_555 M K K . C K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc11 C O THR 196 C THR 196 1_555 M K K . C K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YG7 _atom_sites.fract_transf_matrix[1][1] 0.010085 _atom_sites.fract_transf_matrix[1][2] 0.005822 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RI2 A 1 401 1 RI2 RI2 . E 3 K A 1 402 5 K K . F 4 MRD A 1 403 7 MRD MPD . G 5 5GP A 1 404 51 5GP G . H 2 RI2 B 1 401 2 RI2 RI2 . I 3 K B 1 402 4 K K . J 5 5GP B 1 403 21 5GP G . K 5 5GP B 1 404 31 5GP G . L 2 RI2 C 1 401 3 RI2 RI2 . M 3 K C 1 402 6 K K . N 5 5GP C 1 403 11 5GP G . O 5 5GP C 1 404 41 5GP G . P 6 HOH A 1 501 8 HOH HOH . P 6 HOH A 2 502 133 HOH HOH . P 6 HOH A 3 503 143 HOH HOH . P 6 HOH A 4 504 104 HOH HOH . P 6 HOH A 5 505 199 HOH HOH . P 6 HOH A 6 506 41 HOH HOH . P 6 HOH A 7 507 138 HOH HOH . P 6 HOH A 8 508 97 HOH HOH . P 6 HOH A 9 509 68 HOH HOH . P 6 HOH A 10 510 160 HOH HOH . P 6 HOH A 11 511 131 HOH HOH . P 6 HOH A 12 512 13 HOH HOH . P 6 HOH A 13 513 58 HOH HOH . P 6 HOH A 14 514 59 HOH HOH . P 6 HOH A 15 515 96 HOH HOH . P 6 HOH A 16 516 192 HOH HOH . P 6 HOH A 17 517 27 HOH HOH . P 6 HOH A 18 518 20 HOH HOH . P 6 HOH A 19 519 4 HOH HOH . P 6 HOH A 20 520 44 HOH HOH . P 6 HOH A 21 521 130 HOH HOH . P 6 HOH A 22 522 129 HOH HOH . P 6 HOH A 23 523 211 HOH HOH . P 6 HOH A 24 524 37 HOH HOH . P 6 HOH A 25 525 204 HOH HOH . P 6 HOH A 26 526 34 HOH HOH . P 6 HOH A 27 527 198 HOH HOH . P 6 HOH A 28 528 29 HOH HOH . P 6 HOH A 29 529 95 HOH HOH . P 6 HOH A 30 530 124 HOH HOH . P 6 HOH A 31 531 102 HOH HOH . P 6 HOH A 32 532 94 HOH HOH . P 6 HOH A 33 533 139 HOH HOH . P 6 HOH A 34 534 65 HOH HOH . P 6 HOH A 35 535 32 HOH HOH . P 6 HOH A 36 536 66 HOH HOH . P 6 HOH A 37 537 67 HOH HOH . P 6 HOH A 38 538 184 HOH HOH . P 6 HOH A 39 539 123 HOH HOH . P 6 HOH A 40 540 122 HOH HOH . P 6 HOH A 41 541 42 HOH HOH . P 6 HOH A 42 542 62 HOH HOH . P 6 HOH A 43 543 125 HOH HOH . P 6 HOH A 44 544 136 HOH HOH . P 6 HOH A 45 545 56 HOH HOH . P 6 HOH A 46 546 63 HOH HOH . P 6 HOH A 47 547 132 HOH HOH . P 6 HOH A 48 548 9 HOH HOH . P 6 HOH A 49 549 50 HOH HOH . P 6 HOH A 50 550 134 HOH HOH . P 6 HOH A 51 551 126 HOH HOH . P 6 HOH A 52 552 128 HOH HOH . P 6 HOH A 53 553 98 HOH HOH . P 6 HOH A 54 554 5 HOH HOH . P 6 HOH A 55 555 186 HOH HOH . P 6 HOH A 56 556 100 HOH HOH . P 6 HOH A 57 557 197 HOH HOH . P 6 HOH A 58 558 185 HOH HOH . P 6 HOH A 59 559 45 HOH HOH . P 6 HOH A 60 560 206 HOH HOH . P 6 HOH A 61 561 99 HOH HOH . P 6 HOH A 62 562 101 HOH HOH . P 6 HOH A 63 563 64 HOH HOH . P 6 HOH A 64 564 135 HOH HOH . P 6 HOH A 65 565 205 HOH HOH . P 6 HOH A 66 566 87 HOH HOH . P 6 HOH A 67 567 187 HOH HOH . P 6 HOH A 68 568 127 HOH HOH . P 6 HOH A 69 569 120 HOH HOH . P 6 HOH A 70 570 117 HOH HOH . Q 6 HOH B 1 501 161 HOH HOH . Q 6 HOH B 2 502 140 HOH HOH . Q 6 HOH B 3 503 24 HOH HOH . Q 6 HOH B 4 504 144 HOH HOH . Q 6 HOH B 5 505 46 HOH HOH . Q 6 HOH B 6 506 15 HOH HOH . Q 6 HOH B 7 507 146 HOH HOH . Q 6 HOH B 8 508 28 HOH HOH . Q 6 HOH B 9 509 179 HOH HOH . Q 6 HOH B 10 510 7 HOH HOH . Q 6 HOH B 11 511 14 HOH HOH . Q 6 HOH B 12 512 12 HOH HOH . Q 6 HOH B 13 513 30 HOH HOH . Q 6 HOH B 14 514 6 HOH HOH . Q 6 HOH B 15 515 155 HOH HOH . Q 6 HOH B 16 516 189 HOH HOH . Q 6 HOH B 17 517 142 HOH HOH . Q 6 HOH B 18 518 49 HOH HOH . Q 6 HOH B 19 519 106 HOH HOH . Q 6 HOH B 20 520 16 HOH HOH . Q 6 HOH B 21 521 35 HOH HOH . Q 6 HOH B 22 522 153 HOH HOH . Q 6 HOH B 23 523 108 HOH HOH . Q 6 HOH B 24 524 181 HOH HOH . Q 6 HOH B 25 525 38 HOH HOH . Q 6 HOH B 26 526 25 HOH HOH . Q 6 HOH B 27 527 36 HOH HOH . Q 6 HOH B 28 528 182 HOH HOH . Q 6 HOH B 29 529 84 HOH HOH . Q 6 HOH B 30 530 10 HOH HOH . Q 6 HOH B 31 531 86 HOH HOH . Q 6 HOH B 32 532 145 HOH HOH . Q 6 HOH B 33 533 158 HOH HOH . Q 6 HOH B 34 534 3 HOH HOH . Q 6 HOH B 35 535 51 HOH HOH . Q 6 HOH B 36 536 48 HOH HOH . Q 6 HOH B 37 537 26 HOH HOH . Q 6 HOH B 38 538 151 HOH HOH . Q 6 HOH B 39 539 17 HOH HOH . Q 6 HOH B 40 540 39 HOH HOH . Q 6 HOH B 41 541 1 HOH HOH . Q 6 HOH B 42 542 105 HOH HOH . Q 6 HOH B 43 543 121 HOH HOH . Q 6 HOH B 44 544 92 HOH HOH . Q 6 HOH B 45 545 73 HOH HOH . Q 6 HOH B 46 546 154 HOH HOH . Q 6 HOH B 47 547 118 HOH HOH . Q 6 HOH B 48 548 93 HOH HOH . Q 6 HOH B 49 549 183 HOH HOH . Q 6 HOH B 50 550 210 HOH HOH . Q 6 HOH B 51 551 71 HOH HOH . Q 6 HOH B 52 552 70 HOH HOH . Q 6 HOH B 53 553 175 HOH HOH . Q 6 HOH B 54 554 74 HOH HOH . Q 6 HOH B 55 555 19 HOH HOH . Q 6 HOH B 56 556 148 HOH HOH . Q 6 HOH B 57 557 147 HOH HOH . Q 6 HOH B 58 558 23 HOH HOH . Q 6 HOH B 59 559 43 HOH HOH . Q 6 HOH B 60 560 149 HOH HOH . Q 6 HOH B 61 561 75 HOH HOH . Q 6 HOH B 62 562 53 HOH HOH . Q 6 HOH B 63 563 180 HOH HOH . Q 6 HOH B 64 564 103 HOH HOH . Q 6 HOH B 65 565 72 HOH HOH . Q 6 HOH B 66 566 21 HOH HOH . Q 6 HOH B 67 567 188 HOH HOH . Q 6 HOH B 68 568 150 HOH HOH . Q 6 HOH B 69 569 191 HOH HOH . Q 6 HOH B 70 570 54 HOH HOH . Q 6 HOH B 71 571 157 HOH HOH . Q 6 HOH B 72 572 156 HOH HOH . Q 6 HOH B 73 573 159 HOH HOH . Q 6 HOH B 74 574 88 HOH HOH . Q 6 HOH B 75 575 85 HOH HOH . Q 6 HOH B 76 576 107 HOH HOH . Q 6 HOH B 77 577 152 HOH HOH . R 6 HOH C 1 501 167 HOH HOH . R 6 HOH C 2 502 163 HOH HOH . R 6 HOH C 3 503 177 HOH HOH . R 6 HOH C 4 504 178 HOH HOH . R 6 HOH C 5 505 60 HOH HOH . R 6 HOH C 6 506 69 HOH HOH . R 6 HOH C 7 507 57 HOH HOH . R 6 HOH C 8 508 207 HOH HOH . R 6 HOH C 9 509 174 HOH HOH . R 6 HOH C 10 510 77 HOH HOH . R 6 HOH C 11 511 31 HOH HOH . R 6 HOH C 12 512 115 HOH HOH . R 6 HOH C 13 513 40 HOH HOH . R 6 HOH C 14 514 172 HOH HOH . R 6 HOH C 15 515 22 HOH HOH . R 6 HOH C 16 516 194 HOH HOH . R 6 HOH C 17 517 61 HOH HOH . R 6 HOH C 18 518 164 HOH HOH . R 6 HOH C 19 519 18 HOH HOH . R 6 HOH C 20 520 171 HOH HOH . R 6 HOH C 21 521 82 HOH HOH . R 6 HOH C 22 522 202 HOH HOH . R 6 HOH C 23 523 200 HOH HOH . R 6 HOH C 24 524 11 HOH HOH . R 6 HOH C 25 525 208 HOH HOH . R 6 HOH C 26 526 47 HOH HOH . R 6 HOH C 27 527 78 HOH HOH . R 6 HOH C 28 528 2 HOH HOH . R 6 HOH C 29 529 81 HOH HOH . R 6 HOH C 30 530 83 HOH HOH . R 6 HOH C 31 531 114 HOH HOH . R 6 HOH C 32 532 165 HOH HOH . R 6 HOH C 33 533 162 HOH HOH . R 6 HOH C 34 534 141 HOH HOH . R 6 HOH C 35 535 76 HOH HOH . R 6 HOH C 36 536 52 HOH HOH . R 6 HOH C 37 537 79 HOH HOH . R 6 HOH C 38 538 116 HOH HOH . R 6 HOH C 39 539 137 HOH HOH . R 6 HOH C 40 540 110 HOH HOH . R 6 HOH C 41 541 170 HOH HOH . R 6 HOH C 42 542 166 HOH HOH . R 6 HOH C 43 543 209 HOH HOH . R 6 HOH C 44 544 112 HOH HOH . R 6 HOH C 45 545 190 HOH HOH . R 6 HOH C 46 546 109 HOH HOH . R 6 HOH C 47 547 193 HOH HOH . R 6 HOH C 48 548 169 HOH HOH . R 6 HOH C 49 549 33 HOH HOH . R 6 HOH C 50 550 80 HOH HOH . R 6 HOH C 51 551 173 HOH HOH . R 6 HOH C 52 552 55 HOH HOH . R 6 HOH C 53 553 195 HOH HOH . R 6 HOH C 54 554 113 HOH HOH . R 6 HOH C 55 555 196 HOH HOH . R 6 HOH C 56 556 201 HOH HOH . R 6 HOH C 57 557 89 HOH HOH . R 6 HOH C 58 558 203 HOH HOH . R 6 HOH C 59 559 111 HOH HOH . R 6 HOH C 60 560 176 HOH HOH . R 6 HOH C 61 561 168 HOH HOH . R 6 HOH C 62 562 119 HOH HOH . R 6 HOH C 63 563 91 HOH HOH . R 6 HOH C 64 564 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 51.189 _atom_site.Cartn_y 94.774 _atom_site.Cartn_z 285.838 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 402 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #