data_5YG8 # _model_server_result.job_id HH9SYi8mSCeFv6csrq6YTQ _model_server_result.datetime_utc '2024-11-17 21:57:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":404}' # _entry.id 5YG8 # _exptl.entry_id 5YG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YG8 _cell.length_a 98.59 _cell.length_b 98.59 _cell.length_c 256.151 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_655 -x+y+1,y,-z+1/3 -1 0 0 0 1 0 0 0 -1 98.59 0 85.383667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 193 A MET 193 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.326 ? metalc ? metalc2 A O LYS 194 A LYS 194 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc3 A O THR 196 A THR 196 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc4 B O MET 193 B MET 193 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? metalc ? metalc5 B O LYS 194 B LYS 194 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc6 B O THR 196 B THR 196 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc7 C O MET 193 C MET 193 1_555 N K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.282 ? metalc ? metalc8 C O LYS 194 C LYS 194 1_555 N K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.241 ? metalc ? metalc9 C O THR 196 C THR 196 1_555 N K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc10 N K K . C K 403 1_555 R O HOH . C HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YG8 _atom_sites.fract_transf_matrix[1][1] 0.010143 _atom_sites.fract_transf_matrix[1][2] 0.005856 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RUB A 1 401 1 RUB RUB . E 3 MPD A 1 402 4 MPD MPD . F 4 AMP A 1 403 7 AMP AMP . G 5 K A 1 404 10 K K . H 2 RUB B 1 401 2 RUB RUB . I 4 AMP B 1 402 8 AMP AMP . J 5 K B 1 403 11 K K . K 6 5GP B 1 404 21 5GP G . L 2 RUB C 1 401 3 RUB RUB . M 4 AMP C 1 402 9 AMP AMP . N 5 K C 1 403 12 K K . O 6 5GP C 1 404 31 5GP G . P 7 HOH A 1 501 108 HOH HOH . P 7 HOH A 2 502 102 HOH HOH . P 7 HOH A 3 503 175 HOH HOH . P 7 HOH A 4 504 46 HOH HOH . P 7 HOH A 5 505 109 HOH HOH . P 7 HOH A 6 506 239 HOH HOH . P 7 HOH A 7 507 172 HOH HOH . P 7 HOH A 8 508 106 HOH HOH . P 7 HOH A 9 509 150 HOH HOH . P 7 HOH A 10 510 11 HOH HOH . P 7 HOH A 11 511 248 HOH HOH . P 7 HOH A 12 512 47 HOH HOH . P 7 HOH A 13 513 185 HOH HOH . P 7 HOH A 14 514 143 HOH HOH . P 7 HOH A 15 515 149 HOH HOH . P 7 HOH A 16 516 173 HOH HOH . P 7 HOH A 17 517 39 HOH HOH . P 7 HOH A 18 518 134 HOH HOH . P 7 HOH A 19 519 5 HOH HOH . P 7 HOH A 20 520 174 HOH HOH . P 7 HOH A 21 521 191 HOH HOH . P 7 HOH A 22 522 189 HOH HOH . P 7 HOH A 23 523 37 HOH HOH . P 7 HOH A 24 524 188 HOH HOH . P 7 HOH A 25 525 169 HOH HOH . P 7 HOH A 26 526 38 HOH HOH . P 7 HOH A 27 527 135 HOH HOH . P 7 HOH A 28 528 68 HOH HOH . P 7 HOH A 29 529 171 HOH HOH . P 7 HOH A 30 530 29 HOH HOH . P 7 HOH A 31 531 104 HOH HOH . P 7 HOH A 32 532 34 HOH HOH . P 7 HOH A 33 533 14 HOH HOH . P 7 HOH A 34 534 139 HOH HOH . P 7 HOH A 35 535 164 HOH HOH . P 7 HOH A 36 536 28 HOH HOH . P 7 HOH A 37 537 145 HOH HOH . P 7 HOH A 38 538 86 HOH HOH . P 7 HOH A 39 539 128 HOH HOH . P 7 HOH A 40 540 186 HOH HOH . P 7 HOH A 41 541 16 HOH HOH . P 7 HOH A 42 542 163 HOH HOH . P 7 HOH A 43 543 170 HOH HOH . P 7 HOH A 44 544 35 HOH HOH . P 7 HOH A 45 545 15 HOH HOH . P 7 HOH A 46 546 13 HOH HOH . P 7 HOH A 47 547 178 HOH HOH . P 7 HOH A 48 548 158 HOH HOH . P 7 HOH A 49 549 130 HOH HOH . P 7 HOH A 50 550 107 HOH HOH . P 7 HOH A 51 551 23 HOH HOH . P 7 HOH A 52 552 100 HOH HOH . P 7 HOH A 53 553 138 HOH HOH . P 7 HOH A 54 554 7 HOH HOH . P 7 HOH A 55 555 192 HOH HOH . P 7 HOH A 56 556 183 HOH HOH . P 7 HOH A 57 557 90 HOH HOH . P 7 HOH A 58 558 162 HOH HOH . P 7 HOH A 59 559 12 HOH HOH . P 7 HOH A 60 560 26 HOH HOH . P 7 HOH A 61 561 30 HOH HOH . P 7 HOH A 62 562 10 HOH HOH . P 7 HOH A 63 563 131 HOH HOH . P 7 HOH A 64 564 22 HOH HOH . P 7 HOH A 65 565 140 HOH HOH . P 7 HOH A 66 566 44 HOH HOH . P 7 HOH A 67 567 180 HOH HOH . P 7 HOH A 68 568 129 HOH HOH . P 7 HOH A 69 569 24 HOH HOH . P 7 HOH A 70 570 21 HOH HOH . P 7 HOH A 71 571 141 HOH HOH . P 7 HOH A 72 572 25 HOH HOH . P 7 HOH A 73 573 36 HOH HOH . P 7 HOH A 74 574 168 HOH HOH . P 7 HOH A 75 575 144 HOH HOH . P 7 HOH A 76 576 19 HOH HOH . P 7 HOH A 77 577 190 HOH HOH . P 7 HOH A 78 578 9 HOH HOH . P 7 HOH A 79 579 176 HOH HOH . P 7 HOH A 80 580 27 HOH HOH . P 7 HOH A 81 581 137 HOH HOH . P 7 HOH A 82 582 99 HOH HOH . P 7 HOH A 83 583 110 HOH HOH . P 7 HOH A 84 584 132 HOH HOH . P 7 HOH A 85 585 238 HOH HOH . P 7 HOH A 86 586 146 HOH HOH . P 7 HOH A 87 587 240 HOH HOH . P 7 HOH A 88 588 101 HOH HOH . P 7 HOH A 89 589 136 HOH HOH . P 7 HOH A 90 590 45 HOH HOH . P 7 HOH A 91 591 142 HOH HOH . P 7 HOH A 92 592 182 HOH HOH . P 7 HOH A 93 593 219 HOH HOH . P 7 HOH A 94 594 32 HOH HOH . P 7 HOH A 95 595 60 HOH HOH . P 7 HOH A 96 596 184 HOH HOH . P 7 HOH A 97 597 177 HOH HOH . P 7 HOH A 98 598 31 HOH HOH . P 7 HOH A 99 599 105 HOH HOH . P 7 HOH A 100 600 89 HOH HOH . P 7 HOH A 101 601 85 HOH HOH . P 7 HOH A 102 602 124 HOH HOH . Q 7 HOH B 1 501 226 HOH HOH . Q 7 HOH B 2 502 43 HOH HOH . Q 7 HOH B 3 503 54 HOH HOH . Q 7 HOH B 4 504 33 HOH HOH . Q 7 HOH B 5 505 224 HOH HOH . Q 7 HOH B 6 506 153 HOH HOH . Q 7 HOH B 7 507 223 HOH HOH . Q 7 HOH B 8 508 67 HOH HOH . Q 7 HOH B 9 509 83 HOH HOH . Q 7 HOH B 10 510 113 HOH HOH . Q 7 HOH B 11 511 197 HOH HOH . Q 7 HOH B 12 512 50 HOH HOH . Q 7 HOH B 13 513 57 HOH HOH . Q 7 HOH B 14 514 65 HOH HOH . Q 7 HOH B 15 515 195 HOH HOH . Q 7 HOH B 16 516 52 HOH HOH . Q 7 HOH B 17 517 42 HOH HOH . Q 7 HOH B 18 518 196 HOH HOH . Q 7 HOH B 19 519 215 HOH HOH . Q 7 HOH B 20 520 56 HOH HOH . Q 7 HOH B 21 521 198 HOH HOH . Q 7 HOH B 22 522 152 HOH HOH . Q 7 HOH B 23 523 93 HOH HOH . Q 7 HOH B 24 524 147 HOH HOH . Q 7 HOH B 25 525 237 HOH HOH . Q 7 HOH B 26 526 151 HOH HOH . Q 7 HOH B 27 527 1 HOH HOH . Q 7 HOH B 28 528 51 HOH HOH . Q 7 HOH B 29 529 214 HOH HOH . Q 7 HOH B 30 530 154 HOH HOH . Q 7 HOH B 31 531 211 HOH HOH . Q 7 HOH B 32 532 69 HOH HOH . Q 7 HOH B 33 533 96 HOH HOH . Q 7 HOH B 34 534 166 HOH HOH . Q 7 HOH B 35 535 53 HOH HOH . Q 7 HOH B 36 536 127 HOH HOH . Q 7 HOH B 37 537 63 HOH HOH . Q 7 HOH B 38 538 64 HOH HOH . Q 7 HOH B 39 539 217 HOH HOH . Q 7 HOH B 40 540 208 HOH HOH . Q 7 HOH B 41 541 206 HOH HOH . Q 7 HOH B 42 542 71 HOH HOH . Q 7 HOH B 43 543 221 HOH HOH . Q 7 HOH B 44 544 70 HOH HOH . Q 7 HOH B 45 545 193 HOH HOH . Q 7 HOH B 46 546 222 HOH HOH . Q 7 HOH B 47 547 3 HOH HOH . Q 7 HOH B 48 548 155 HOH HOH . Q 7 HOH B 49 549 148 HOH HOH . Q 7 HOH B 50 550 91 HOH HOH . Q 7 HOH B 51 551 201 HOH HOH . Q 7 HOH B 52 552 73 HOH HOH . Q 7 HOH B 53 553 123 HOH HOH . Q 7 HOH B 54 554 181 HOH HOH . Q 7 HOH B 55 555 199 HOH HOH . Q 7 HOH B 56 556 8 HOH HOH . Q 7 HOH B 57 557 156 HOH HOH . Q 7 HOH B 58 558 241 HOH HOH . Q 7 HOH B 59 559 48 HOH HOH . Q 7 HOH B 60 560 179 HOH HOH . Q 7 HOH B 61 561 200 HOH HOH . Q 7 HOH B 62 562 210 HOH HOH . Q 7 HOH B 63 563 204 HOH HOH . Q 7 HOH B 64 564 55 HOH HOH . Q 7 HOH B 65 565 203 HOH HOH . Q 7 HOH B 66 566 220 HOH HOH . Q 7 HOH B 67 567 243 HOH HOH . Q 7 HOH B 68 568 202 HOH HOH . Q 7 HOH B 69 569 61 HOH HOH . Q 7 HOH B 70 570 87 HOH HOH . Q 7 HOH B 71 571 235 HOH HOH . Q 7 HOH B 72 572 59 HOH HOH . Q 7 HOH B 73 573 209 HOH HOH . Q 7 HOH B 74 574 74 HOH HOH . Q 7 HOH B 75 575 58 HOH HOH . Q 7 HOH B 76 576 225 HOH HOH . Q 7 HOH B 77 577 227 HOH HOH . Q 7 HOH B 78 578 66 HOH HOH . Q 7 HOH B 79 579 62 HOH HOH . Q 7 HOH B 80 580 122 HOH HOH . Q 7 HOH B 81 581 216 HOH HOH . Q 7 HOH B 82 582 212 HOH HOH . Q 7 HOH B 83 583 165 HOH HOH . Q 7 HOH B 84 584 213 HOH HOH . Q 7 HOH B 85 585 94 HOH HOH . Q 7 HOH B 86 586 207 HOH HOH . Q 7 HOH B 87 587 72 HOH HOH . Q 7 HOH B 88 588 249 HOH HOH . Q 7 HOH B 89 589 95 HOH HOH . Q 7 HOH B 90 590 244 HOH HOH . Q 7 HOH B 91 591 114 HOH HOH . Q 7 HOH B 92 592 205 HOH HOH . Q 7 HOH B 93 593 218 HOH HOH . Q 7 HOH B 94 594 49 HOH HOH . Q 7 HOH B 95 595 88 HOH HOH . Q 7 HOH B 96 596 103 HOH HOH . Q 7 HOH B 97 597 112 HOH HOH . Q 7 HOH B 98 598 194 HOH HOH . R 7 HOH C 1 501 17 HOH HOH . R 7 HOH C 2 502 120 HOH HOH . R 7 HOH C 3 503 133 HOH HOH . R 7 HOH C 4 504 117 HOH HOH . R 7 HOH C 5 505 6 HOH HOH . R 7 HOH C 6 506 246 HOH HOH . R 7 HOH C 7 507 75 HOH HOH . R 7 HOH C 8 508 230 HOH HOH . R 7 HOH C 9 509 84 HOH HOH . R 7 HOH C 10 510 160 HOH HOH . R 7 HOH C 11 511 233 HOH HOH . R 7 HOH C 12 512 125 HOH HOH . R 7 HOH C 13 513 247 HOH HOH . R 7 HOH C 14 514 20 HOH HOH . R 7 HOH C 15 515 78 HOH HOH . R 7 HOH C 16 516 228 HOH HOH . R 7 HOH C 17 517 18 HOH HOH . R 7 HOH C 18 518 82 HOH HOH . R 7 HOH C 19 519 79 HOH HOH . R 7 HOH C 20 520 236 HOH HOH . R 7 HOH C 21 521 2 HOH HOH . R 7 HOH C 22 522 116 HOH HOH . R 7 HOH C 23 523 187 HOH HOH . R 7 HOH C 24 524 115 HOH HOH . R 7 HOH C 25 525 92 HOH HOH . R 7 HOH C 26 526 159 HOH HOH . R 7 HOH C 27 527 167 HOH HOH . R 7 HOH C 28 528 80 HOH HOH . R 7 HOH C 29 529 77 HOH HOH . R 7 HOH C 30 530 229 HOH HOH . R 7 HOH C 31 531 126 HOH HOH . R 7 HOH C 32 532 242 HOH HOH . R 7 HOH C 33 533 111 HOH HOH . R 7 HOH C 34 534 4 HOH HOH . R 7 HOH C 35 535 161 HOH HOH . R 7 HOH C 36 536 234 HOH HOH . R 7 HOH C 37 537 76 HOH HOH . R 7 HOH C 38 538 121 HOH HOH . R 7 HOH C 39 539 98 HOH HOH . R 7 HOH C 40 540 157 HOH HOH . R 7 HOH C 41 541 40 HOH HOH . R 7 HOH C 42 542 231 HOH HOH . R 7 HOH C 43 543 81 HOH HOH . R 7 HOH C 44 544 245 HOH HOH . R 7 HOH C 45 545 232 HOH HOH . R 7 HOH C 46 546 97 HOH HOH . R 7 HOH C 47 547 119 HOH HOH . R 7 HOH C 48 548 41 HOH HOH . R 7 HOH C 49 549 118 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 47.639 _atom_site.Cartn_y -9.11 _atom_site.Cartn_z 40.646 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #