data_5YGQ
#
_model_server_result.job_id            lRKamiH5qwBqG1-oYZQKOA 
_model_server_result.datetime_utc      '2024-11-14 03:18:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ygq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5YGQ 
#
_exptl.entry_id    5YGQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YGQ 
_cell.length_a            70.868 
_cell.length_b            81.227 
_cell.length_c            122.182 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5YGQ 
_atom_sites.fract_transf_matrix[1][1]    0.014111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 401 343 FAD FAD . 
D 2 FAD B 1 401 343 FAD FAD . 
E 3 HOH A 1 501 17 HOH HOH . 
E 3 HOH A 2 502 6 HOH HOH . 
E 3 HOH A 3 503 35 HOH HOH . 
E 3 HOH A 4 504 19 HOH HOH . 
E 3 HOH A 5 505 49 HOH HOH . 
E 3 HOH A 6 506 29 HOH HOH . 
E 3 HOH A 7 507 44 HOH HOH . 
E 3 HOH A 8 508 4 HOH HOH . 
E 3 HOH A 9 509 8 HOH HOH . 
E 3 HOH A 10 510 46 HOH HOH . 
E 3 HOH A 11 511 7 HOH HOH . 
E 3 HOH A 12 512 25 HOH HOH . 
E 3 HOH A 13 513 30 HOH HOH . 
E 3 HOH A 14 514 1 HOH HOH . 
E 3 HOH A 15 515 31 HOH HOH . 
E 3 HOH A 16 516 36 HOH HOH . 
E 3 HOH A 17 517 5 HOH HOH . 
E 3 HOH A 18 518 34 HOH HOH . 
E 3 HOH A 19 519 37 HOH HOH . 
E 3 HOH A 20 520 48 HOH HOH . 
E 3 HOH A 21 521 16 HOH HOH . 
E 3 HOH A 22 522 21 HOH HOH . 
E 3 HOH A 23 523 3 HOH HOH . 
E 3 HOH A 24 524 50 HOH HOH . 
E 3 HOH A 25 525 33 HOH HOH . 
E 3 HOH A 26 526 18 HOH HOH . 
E 3 HOH A 27 527 23 HOH HOH . 
E 3 HOH A 28 528 2 HOH HOH . 
E 3 HOH A 29 529 27 HOH HOH . 
E 3 HOH A 30 530 20 HOH HOH . 
F 3 HOH B 1 501 28 HOH HOH . 
F 3 HOH B 2 502 9 HOH HOH . 
F 3 HOH B 3 503 42 HOH HOH . 
F 3 HOH B 4 504 26 HOH HOH . 
F 3 HOH B 5 505 12 HOH HOH . 
F 3 HOH B 6 506 13 HOH HOH . 
F 3 HOH B 7 507 22 HOH HOH . 
F 3 HOH B 8 508 38 HOH HOH . 
F 3 HOH B 9 509 15 HOH HOH . 
F 3 HOH B 10 510 39 HOH HOH . 
F 3 HOH B 11 511 32 HOH HOH . 
F 3 HOH B 12 512 11 HOH HOH . 
F 3 HOH B 13 513 14 HOH HOH . 
F 3 HOH B 14 514 10 HOH HOH . 
F 3 HOH B 15 515 41 HOH HOH . 
F 3 HOH B 16 516 24 HOH HOH . 
F 3 HOH B 17 517 40 HOH HOH . 
F 3 HOH B 18 518 43 HOH HOH . 
F 3 HOH B 19 519 51 HOH HOH . 
F 3 HOH B 20 520 47 HOH HOH . 
F 3 HOH B 21 521 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 13.538 15.448 22.628 1 29.96 ? PA FAD 401 A 1 
HETATM 2 O O1A FAD . . . C 2 14.922 16.011 22.257 1 31.17 ? O1A FAD 401 A 1 
HETATM 3 O O2A FAD . . . C 2 13.064 14.249 21.889 1 30.74 ? O2A FAD 401 A 1 
HETATM 4 O O5B FAD . . . C 2 13.465 15.31 24.196 1 29.63 ? O5B FAD 401 A 1 
HETATM 5 C C5B FAD . . . C 2 12.593 14.321 24.699 1 31.12 ? C5B FAD 401 A 1 
HETATM 6 C C4B FAD . . . C 2 12.959 14.019 26.118 1 30.35 ? C4B FAD 401 A 1 
HETATM 7 O O4B FAD . . . C 2 11.783 13.547 26.755 1 31.77 ? O4B FAD 401 A 1 
HETATM 8 C C3B FAD . . . C 2 13.969 12.94 26.248 1 29.15 ? C3B FAD 401 A 1 
HETATM 9 O O3B FAD . . . C 2 15.03 13.44 27.082 1 27.51 ? O3B FAD 401 A 1 
HETATM 10 C C2B FAD . . . C 2 13.224 11.755 26.939 1 29.89 ? C2B FAD 401 A 1 
HETATM 11 O O2B FAD . . . C 2 14.061 11.027 27.88 1 28.44 ? O2B FAD 401 A 1 
HETATM 12 C C1B FAD . . . C 2 12.105 12.468 27.641 1 30.37 ? C1B FAD 401 A 1 
HETATM 13 N N9A FAD . . . C 2 10.882 11.688 27.939 1 31.13 ? N9A FAD 401 A 1 
HETATM 14 C C8A FAD . . . C 2 9.986 11.15 27.087 1 31.7 ? C8A FAD 401 A 1 
HETATM 15 N N7A FAD . . . C 2 8.952 10.568 27.71 1 32.3 ? N7A FAD 401 A 1 
HETATM 16 C C5A FAD . . . C 2 9.205 10.787 29.035 1 32.28 ? C5A FAD 401 A 1 
HETATM 17 C C6A FAD . . . C 2 8.63 10.331 30.288 1 32.39 ? C6A FAD 401 A 1 
HETATM 18 N N6A FAD . . . C 2 7.483 9.636 30.328 1 33.06 ? N6A FAD 401 A 1 
HETATM 19 N N1A FAD . . . C 2 9.225 10.695 31.417 1 32.64 ? N1A FAD 401 A 1 
HETATM 20 C C2A FAD . . . C 2 10.351 11.384 31.436 1 32.88 ? C2A FAD 401 A 1 
HETATM 21 N N3A FAD . . . C 2 10.995 11.749 30.346 1 31.94 ? N3A FAD 401 A 1 
HETATM 22 C C4A FAD . . . C 2 10.469 11.466 29.159 1 31.97 ? C4A FAD 401 A 1 
HETATM 23 N N1 FAD . . . C 2 16.421 18.868 14.36 1 33.89 ? N1 FAD 401 A 1 
HETATM 24 C C2 FAD . . . C 2 16.666 20.032 13.768 1 34.17 ? C2 FAD 401 A 1 
HETATM 25 O O2 FAD . . . C 2 15.752 20.883 13.778 1 33.37 ? O2 FAD 401 A 1 
HETATM 26 N N3 FAD . . . C 2 17.818 20.27 13.119 1 35.95 ? N3 FAD 401 A 1 
HETATM 27 C C4 FAD . . . C 2 18.812 19.371 13.022 1 36.29 ? C4 FAD 401 A 1 
HETATM 28 O O4 FAD . . . C 2 19.874 19.624 12.396 1 36.94 ? O4 FAD 401 A 1 
HETATM 29 C C4X FAD . . . C 2 18.583 18.065 13.686 1 36.61 ? C4X FAD 401 A 1 
HETATM 30 N N5 FAD . . . C 2 19.509 17.092 13.69 1 36.6 ? N5 FAD 401 A 1 
HETATM 31 C C5X FAD . . . C 2 19.311 15.94 14.344 1 37.41 ? C5X FAD 401 A 1 
HETATM 32 C C6 FAD . . . C 2 20.328 14.979 14.28 1 38.01 ? C6 FAD 401 A 1 
HETATM 33 C C7 FAD . . . C 2 20.173 13.783 14.92 1 39.05 ? C7 FAD 401 A 1 
HETATM 34 C C7M FAD . . . C 2 21.28 12.726 14.879 1 41.49 ? C7M FAD 401 A 1 
HETATM 35 C C8 FAD . . . C 2 18.887 13.494 15.626 1 36.6 ? C8 FAD 401 A 1 
HETATM 36 C C8M FAD . . . C 2 18.748 12.126 16.3 1 36.36 ? C8M FAD 401 A 1 
HETATM 37 C C9 FAD . . . C 2 17.865 14.42 15.687 1 34.11 ? C9 FAD 401 A 1 
HETATM 38 C C9A FAD . . . C 2 18.033 15.676 15.095 1 35.72 ? C9A FAD 401 A 1 
HETATM 39 N N10 FAD . . . C 2 17.065 16.694 15.099 1 32.02 ? N10 FAD 401 A 1 
HETATM 40 C C10 FAD . . . C 2 17.296 17.865 14.376 1 34.17 ? C10 FAD 401 A 1 
HETATM 41 C C1' FAD . . . C 2 15.773 16.534 15.717 1 30.03 ? C1' FAD 401 A 1 
HETATM 42 C C2' FAD . . . C 2 15.714 17.207 17.019 1 28.55 ? C2' FAD 401 A 1 
HETATM 43 O O2' FAD . . . C 2 16.754 16.58 17.793 1 29.7 ? O2' FAD 401 A 1 
HETATM 44 C C3' FAD . . . C 2 14.309 16.992 17.56 1 28.64 ? C3' FAD 401 A 1 
HETATM 45 O O3' FAD . . . C 2 13.332 17.557 16.668 1 28.86 ? O3' FAD 401 A 1 
HETATM 46 C C4' FAD . . . C 2 14.249 17.561 18.973 1 28.01 ? C4' FAD 401 A 1 
HETATM 47 O O4' FAD . . . C 2 15.174 16.883 19.875 1 27.64 ? O4' FAD 401 A 1 
HETATM 48 C C5' FAD . . . C 2 12.853 17.463 19.558 1 27.52 ? C5' FAD 401 A 1 
HETATM 49 O O5' FAD . . . C 2 13.029 17.848 20.89 1 27.44 ? O5' FAD 401 A 1 
HETATM 50 P P FAD . . . C 2 11.775 17.721 21.897 1 25.4 ? P FAD 401 A 1 
HETATM 51 O O1P FAD . . . C 2 10.476 17.492 21.203 1 25.5 ? O1P FAD 401 A 1 
HETATM 52 O O2P FAD . . . C 2 11.968 18.686 23.045 1 27.2 ? O2P FAD 401 A 1 
HETATM 53 O O3P FAD . . . C 2 12.133 16.267 22.56 1 30.17 ? O3P FAD 401 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           53 
#