data_5YHF
#
_model_server_result.job_id            TOeB1IpKD6ubLylRFtlX3g 
_model_server_result.datetime_utc      '2025-09-04 05:30:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yhf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    5YHF 
#
_exptl.entry_id    5YHF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         75.11 
_cell.angle_beta          75.23 
_cell.angle_gamma         80.83 
_cell.entry_id            5YHF 
_cell.length_a            55.19 
_cell.length_b            65.64 
_cell.length_c            79.98 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YHF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 224 n n 
C10 C9 OLC doub 225 n n 
C10 C11 OLC sing 226 n n 
C9 C8 OLC sing 227 n n 
C17 C16 OLC sing 228 z n 
C11 C12 OLC sing 229 n n 
C8 C7 OLC sing 230 n n 
C24 C22 OLC sing 231 n n 
C24 O25 OLC sing 232 n n 
C16 C15 OLC sing 233 n n 
C12 C13 OLC sing 234 n n 
C7 C6 OLC sing 235 n n 
C15 C14 OLC sing 236 n n 
C13 C14 OLC sing 237 n n 
C6 C5 OLC sing 238 n n 
C5 C4 OLC sing 239 n n 
C4 C3 OLC sing 240 n n 
C3 C2 OLC sing 241 n n 
C2 C1 OLC sing 242 n n 
C21 C22 OLC sing 243 n n 
C21 O20 OLC sing 244 n n 
C1 O19 OLC doub 245 n n 
C1 O20 OLC sing 246 n n 
C22 O23 OLC sing 247 n n 
C18 H18 OLC sing 248 n n 
C18 H18A OLC sing 249 n n 
C18 H18B OLC sing 250 n n 
C10 H10 OLC sing 251 n n 
C9 H9 OLC sing 252 n n 
C17 H17 OLC sing 253 n n 
C17 H17A OLC sing 254 n n 
C11 H11 OLC sing 255 n n 
C11 H11A OLC sing 256 n n 
C8 H8 OLC sing 257 n n 
C8 H8A OLC sing 258 n n 
C24 H24 OLC sing 259 n n 
C24 H24A OLC sing 260 n n 
C16 H16 OLC sing 261 n n 
C16 H16A OLC sing 262 n n 
C12 H12 OLC sing 263 n n 
C12 H12A OLC sing 264 n n 
C7 H7 OLC sing 265 n n 
C7 H7A OLC sing 266 n n 
C15 H15 OLC sing 267 n n 
C15 H15A OLC sing 268 n n 
C13 H13 OLC sing 269 n n 
C13 H13A OLC sing 270 n n 
C6 H6 OLC sing 271 n n 
C6 H6A OLC sing 272 n n 
C14 H14 OLC sing 273 n n 
C14 H14A OLC sing 274 n n 
C5 H5 OLC sing 275 n n 
C5 H5A OLC sing 276 n n 
C4 H4 OLC sing 277 n n 
C4 H4A OLC sing 278 n n 
C3 H3 OLC sing 279 n n 
C3 H3A OLC sing 280 n n 
C2 H2 OLC sing 281 n n 
C2 H2A OLC sing 282 n n 
C21 H21 OLC sing 283 n n 
C21 H21A OLC sing 284 n n 
C22 H22 OLC sing 285 n n 
O25 HO25 OLC sing 286 n n 
O23 HO23 OLC sing 287 n n 
#
_atom_sites.entry_id                     5YHF 
_atom_sites.fract_transf_matrix[1][1]    0.018119 
_atom_sites.fract_transf_matrix[1][2]    -0.002924 
_atom_sites.fract_transf_matrix[1][3]    -0.004223 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015432 
_atom_sites.fract_transf_matrix[2][3]    -0.003592 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013276 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OLC A 1 801 1 OLC OLC . 
C 2 OLC A 1 802 2 OLC OLC . 
D 2 OLC A 1 803 3 OLC OLC . 
E 2 OLC A 1 804 4 OLC OLC . 
F 2 OLC A 1 805 5 OLC OLC . 
G 3 PEG A 1 806 1 PEG PEG . 
H 4 HOH A 1 901 27 HOH HOH . 
H 4 HOH A 2 902 7 HOH HOH . 
H 4 HOH A 3 903 9 HOH HOH . 
H 4 HOH A 4 904 6 HOH HOH . 
H 4 HOH A 5 905 17 HOH HOH . 
H 4 HOH A 6 906 18 HOH HOH . 
H 4 HOH A 7 907 10 HOH HOH . 
H 4 HOH A 8 908 5 HOH HOH . 
H 4 HOH A 9 909 13 HOH HOH . 
H 4 HOH A 10 910 8 HOH HOH . 
H 4 HOH A 11 911 2 HOH HOH . 
H 4 HOH A 12 912 1 HOH HOH . 
H 4 HOH A 13 913 4 HOH HOH . 
H 4 HOH A 14 914 3 HOH HOH . 
H 4 HOH A 15 915 15 HOH HOH . 
H 4 HOH A 16 916 25 HOH HOH . 
H 4 HOH A 17 917 11 HOH HOH . 
H 4 HOH A 18 918 14 HOH HOH . 
H 4 HOH A 19 919 19 HOH HOH . 
H 4 HOH A 20 920 22 HOH HOH . 
H 4 HOH A 21 921 16 HOH HOH . 
H 4 HOH A 22 922 12 HOH HOH . 
H 4 HOH A 23 923 20 HOH HOH . 
H 4 HOH A 24 924 23 HOH HOH . 
H 4 HOH A 25 925 21 HOH HOH . 
H 4 HOH A 26 926 24 HOH HOH . 
H 4 HOH A 27 927 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . C 2 2.793 19.618 7.876 1 48.35 ? C18 OLC 802 A 1 
HETATM 2 C C10 OLC . . . C 2 5.295 15.195 1.373 1 61.71 ? C10 OLC 802 A 1 
HETATM 3 C C9 OLC . . . C 2 6.361 14.953 2.13 1 60.73 ? C9 OLC 802 A 1 
HETATM 4 C C17 OLC . . . C 2 2.865 19.639 6.364 1 50.54 ? C17 OLC 802 A 1 
HETATM 5 C C11 OLC . . . C 2 4.121 15.945 1.954 1 64.24 ? C11 OLC 802 A 1 
HETATM 6 C C8 OLC . . . C 2 6.404 15.45 3.557 1 59.44 ? C8 OLC 802 A 1 
HETATM 7 C C24 OLC . . . C 2 4.328 16.902 15.269 1 92.1 ? C24 OLC 802 A 1 
HETATM 8 C C16 OLC . . . C 2 1.897 18.628 5.762 1 53.9 ? C16 OLC 802 A 1 
HETATM 9 C C12 OLC . . . C 2 4.061 17.363 1.4 1 65.72 ? C12 OLC 802 A 1 
HETATM 10 C C7 OLC . . . C 2 6.255 14.277 4.517 1 57.44 ? C7 OLC 802 A 1 
HETATM 11 C C15 OLC . . . C 2 1.841 18.742 4.242 1 56.17 ? C15 OLC 802 A 1 
HETATM 12 C C13 OLC . . . C 2 2.932 18.142 2.066 1 63.13 ? C13 OLC 802 A 1 
HETATM 13 C C6 OLC . . . C 2 6.811 14.619 5.894 1 58.69 ? C6 OLC 802 A 1 
HETATM 14 C C14 OLC . . . C 2 3.08 18.145 3.584 1 58.74 ? C14 OLC 802 A 1 
HETATM 15 C C5 OLC . . . C 2 6.002 15.692 6.615 1 60.55 ? C5 OLC 802 A 1 
HETATM 16 C C4 OLC . . . C 2 6.505 15.821 8.048 1 64.56 ? C4 OLC 802 A 1 
HETATM 17 C C3 OLC . . . C 2 5.818 16.931 8.836 1 71.19 ? C3 OLC 802 A 1 
HETATM 18 C C2 OLC . . . C 2 6.313 16.92 10.279 1 81.29 ? C2 OLC 802 A 1 
HETATM 19 C C21 OLC . . . C 2 4.48 18.46 13.314 1 94.73 ? C21 OLC 802 A 1 
HETATM 20 C C1 OLC . . . C 2 5.535 17.907 11.117 1 88.71 ? C1 OLC 802 A 1 
HETATM 21 C C22 OLC . . . C 2 4.753 18.292 14.806 1 95.71 ? C22 OLC 802 A 1 
HETATM 22 O O19 OLC . . . C 2 4.972 18.858 10.599 1 92.4 ? O19 OLC 802 A 1 
HETATM 23 O O25 OLC . . . C 2 2.899 16.811 15.273 1 89.93 ? O25 OLC 802 A 1 
HETATM 24 O O23 OLC . . . C 2 6.152 18.469 15.056 1 97.66 ? O23 OLC 802 A 1 
HETATM 25 O O20 OLC . . . C 2 5.439 17.722 12.558 1 90.12 ? O20 OLC 802 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           25 
#