data_5YHT # _model_server_result.job_id fCYN31ta8EyD5dof8UD2UQ _model_server_result.datetime_utc '2024-12-04 17:43:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5YHT # _exptl.entry_id 5YHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.179 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description L-histidinol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YHT _cell.length_a 92.664 _cell.length_b 142.446 _cell.length_c 48.723 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YHT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 51 A ASP 44 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A OE1 GLU 74 A GLU 67 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 A OE2 GLU 74 A GLU 67 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc4 A OD2 ASP 90 A ASP 83 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 A OD1 ASP 90 A ASP 83 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A OD1 ASP 220 A ASP 213 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 C ZN ZN . A ZN 301 1_555 E OP3 HSA . A HSA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc8 C ZN ZN . A ZN 301 1_555 L O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 E OP1 HSA . A HSA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc10 B OE1 GLU 74 B GLU 67 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc11 B OD2 ASP 90 B ASP 83 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc12 B OD1 ASP 93 B ASP 86 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc13 B OD1 ASP 220 B ASP 213 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc14 B OD2 ASP 220 B ASP 213 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc15 I ZN ZN . B ZN 303 1_555 J O4 PO4 . B PO4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc16 I ZN ZN . B ZN 303 1_555 M O HOH . B HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? # _chem_comp.formula 'C6 H12 N3 O 1' _chem_comp.formula_weight 142.179 _chem_comp.id HSO _chem_comp.mon_nstd_flag n _chem_comp.name L-histidinol _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HSO sing 178 n n CE1 NE2 HSO sing 179 n y CE1 ND1 HSO doub 180 n y NE2 CD2 HSO sing 181 n y CA C HSO sing 182 n n CA CB HSO sing 183 n n ND1 CG HSO sing 184 n y CD2 CG HSO doub 185 n y O C HSO sing 186 n n CG CB HSO sing 187 n n N H HSO sing 188 n n N H2 HSO sing 189 n n CA HA HSO sing 190 n n CB HB2 HSO sing 191 n n CB HB3 HSO sing 192 n n ND1 HD1 HSO sing 193 n n CD2 HD2 HSO sing 194 n n CE1 HE1 HSO sing 195 n n NE2 HE2 HSO sing 196 n n C H1 HSO sing 197 n n C H11 HSO sing 198 n n O HO HSO sing 199 n n # _atom_sites.entry_id 5YHT _atom_sites.fract_transf_matrix[1][1] 0.010792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 261 ZN ZN . D 2 ZN A 1 302 262 ZN ZN . E 3 HSA A 1 303 263 HSA HSA . F 4 PO4 A 1 304 401 PO4 PO4 . G 5 HSO B 1 301 400 HSO HSO . H 2 ZN B 1 302 261 ZN ZN . I 2 ZN B 1 303 262 ZN ZN . J 4 PO4 B 1 304 400 PO4 PO4 . K 4 PO4 B 1 305 401 PO4 PO4 . L 6 HOH A 1 401 1 HOH HOH . L 6 HOH A 2 402 2 HOH HOH . L 6 HOH A 3 403 9 HOH HOH . L 6 HOH A 4 404 30 HOH HOH . L 6 HOH A 5 405 3 HOH HOH . L 6 HOH A 6 406 17 HOH HOH . L 6 HOH A 7 407 28 HOH HOH . M 6 HOH B 1 401 13 HOH HOH . M 6 HOH B 2 402 27 HOH HOH . M 6 HOH B 3 403 20 HOH HOH . M 6 HOH B 4 404 31 HOH HOH . M 6 HOH B 5 405 6 HOH HOH . M 6 HOH B 6 406 29 HOH HOH . M 6 HOH B 7 407 18 HOH HOH . M 6 HOH B 8 408 24 HOH HOH . M 6 HOH B 9 409 26 HOH HOH . M 6 HOH B 10 410 19 HOH HOH . M 6 HOH B 11 411 8 HOH HOH . M 6 HOH B 12 412 21 HOH HOH . M 6 HOH B 13 413 25 HOH HOH . M 6 HOH B 14 414 5 HOH HOH . M 6 HOH B 15 415 15 HOH HOH . M 6 HOH B 16 416 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HSO . A . G 5 -40.021 29.556 14.004 0.5 48.59 ? N HSO 301 B 1 HETATM 2 N N HSO . B . G 5 -40.846 30.253 15.152 0.5 66.84 ? N HSO 301 B 1 HETATM 3 C CA HSO . A . G 5 -41.062 29.645 12.93 0.5 53.15 ? CA HSO 301 B 1 HETATM 4 C CA HSO . B . G 5 -41.224 31.644 14.745 0.5 73.57 ? CA HSO 301 B 1 HETATM 5 C CB HSO . A . G 5 -41.463 31.117 12.774 0.5 50.39 ? CB HSO 301 B 1 HETATM 6 C CB HSO . B . G 5 -41.915 31.571 13.379 0.5 72.11 ? CB HSO 301 B 1 HETATM 7 C CG HSO . A . G 5 -41.739 31.767 14.086 0.5 52.65 ? CG HSO 301 B 1 HETATM 8 C CG HSO . B . G 5 -41.366 30.479 12.529 0.5 77.58 ? CG HSO 301 B 1 HETATM 9 N ND1 HSO . A . G 5 -42.484 32.926 14.199 0.5 53.14 ? ND1 HSO 301 B 1 HETATM 10 N ND1 HSO . B . G 5 -41.915 30.142 11.307 0.5 79.94 ? ND1 HSO 301 B 1 HETATM 11 C CD2 HSO . A . G 5 -41.373 31.435 15.341 0.5 53.11 ? CD2 HSO 301 B 1 HETATM 12 C CD2 HSO . B . G 5 -40.331 29.639 12.72 0.5 79.52 ? CD2 HSO 301 B 1 HETATM 13 C CE1 HSO . A . G 5 -42.624 33.224 15.484 0.5 53.7 ? CE1 HSO 301 B 1 HETATM 14 C CE1 HSO . B . G 5 -41.249 29.11 10.807 0.5 81 ? CE1 HSO 301 B 1 HETATM 15 N NE2 HSO . A . G 5 -41.959 32.338 16.193 0.5 52.06 ? NE2 HSO 301 B 1 HETATM 16 N NE2 HSO . B . G 5 -40.291 28.786 11.647 0.5 79.65 ? NE2 HSO 301 B 1 HETATM 17 C C HSO . A . G 5 -40.491 29.073 11.619 0.5 54.43 ? C HSO 301 B 1 HETATM 18 C C HSO . B . G 5 -42.156 32.248 15.806 0.5 74.11 ? C HSO 301 B 1 HETATM 19 O O HSO . A . G 5 -41.464 29.055 10.575 0.5 54.91 ? O HSO 301 B 1 HETATM 20 O O HSO . B . G 5 -42.45 33.612 15.525 0.5 74.02 ? O HSO 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #