data_5YHT # _model_server_result.job_id 47CSjHsDwRfpZIUatO1Zvg _model_server_result.datetime_utc '2024-12-04 17:49:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5YHT # _exptl.entry_id 5YHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHORIC ACID MONO-[2-AMINO-3-(3H-IMIDAZOL-4-YL)-PROPYL]ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YHT _cell.length_a 92.664 _cell.length_b 142.446 _cell.length_c 48.723 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YHT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 51 A ASP 44 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A OE1 GLU 74 A GLU 67 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 A OE2 GLU 74 A GLU 67 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc4 A OD2 ASP 90 A ASP 83 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 A OD1 ASP 90 A ASP 83 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A OD1 ASP 220 A ASP 213 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 C ZN ZN . A ZN 301 1_555 E OP3 HSA . A HSA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc8 C ZN ZN . A ZN 301 1_555 L O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 E OP1 HSA . A HSA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc10 B OE1 GLU 74 B GLU 67 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc11 B OD2 ASP 90 B ASP 83 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc12 B OD1 ASP 93 B ASP 86 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc13 B OD1 ASP 220 B ASP 213 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc14 B OD2 ASP 220 B ASP 213 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc15 I ZN ZN . B ZN 303 1_555 J O4 PO4 . B PO4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc16 I ZN ZN . B ZN 303 1_555 M O HOH . B HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? # _chem_comp.formula 'C6 H12 N3 O4 P' _chem_comp.formula_weight 221.151 _chem_comp.id HSA _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHORIC ACID MONO-[2-AMINO-3-(3H-IMIDAZOL-4-YL)-PROPYL]ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CB CG HSA sing 152 n n CB CA HSA sing 153 n n CB HB1 HSA sing 154 n n CB HB2 HSA sing 155 n n CG CD2 HSA doub 156 n y CG ND1 HSA sing 157 n y CD2 NE2 HSA sing 158 n y CD2 HD2 HSA sing 159 n n ND1 CE1 HSA doub 160 n y CE1 NE2 HSA sing 161 n y CE1 HE1 HSA sing 162 n n NE2 HE2 HSA sing 163 n n C OP4 HSA sing 164 n n C CA HSA sing 165 n n C H41 HSA sing 166 n n C H42 HSA sing 167 n n OP4 P HSA sing 168 n n P OP1 HSA doub 169 n n P OP2 HSA sing 170 n n P OP3 HSA sing 171 n n OP2 HO2 HSA sing 172 n n OP3 HO3 HSA sing 173 n n N CA HSA sing 174 n n N HN1 HSA sing 175 n n N HN2 HSA sing 176 n n CA HA HSA sing 177 n n # _atom_sites.entry_id 5YHT _atom_sites.fract_transf_matrix[1][1] 0.010792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 261 ZN ZN . D 2 ZN A 1 302 262 ZN ZN . E 3 HSA A 1 303 263 HSA HSA . F 4 PO4 A 1 304 401 PO4 PO4 . G 5 HSO B 1 301 400 HSO HSO . H 2 ZN B 1 302 261 ZN ZN . I 2 ZN B 1 303 262 ZN ZN . J 4 PO4 B 1 304 400 PO4 PO4 . K 4 PO4 B 1 305 401 PO4 PO4 . L 6 HOH A 1 401 1 HOH HOH . L 6 HOH A 2 402 2 HOH HOH . L 6 HOH A 3 403 9 HOH HOH . L 6 HOH A 4 404 30 HOH HOH . L 6 HOH A 5 405 3 HOH HOH . L 6 HOH A 6 406 17 HOH HOH . L 6 HOH A 7 407 28 HOH HOH . M 6 HOH B 1 401 13 HOH HOH . M 6 HOH B 2 402 27 HOH HOH . M 6 HOH B 3 403 20 HOH HOH . M 6 HOH B 4 404 31 HOH HOH . M 6 HOH B 5 405 6 HOH HOH . M 6 HOH B 6 406 29 HOH HOH . M 6 HOH B 7 407 18 HOH HOH . M 6 HOH B 8 408 24 HOH HOH . M 6 HOH B 9 409 26 HOH HOH . M 6 HOH B 10 410 19 HOH HOH . M 6 HOH B 11 411 8 HOH HOH . M 6 HOH B 12 412 21 HOH HOH . M 6 HOH B 13 413 25 HOH HOH . M 6 HOH B 14 414 5 HOH HOH . M 6 HOH B 15 415 15 HOH HOH . M 6 HOH B 16 416 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CB HSA . . . E 3 -48.419 19.218 24.418 1 78.76 ? CB HSA 303 A 1 HETATM 2 C CG HSA . . . E 3 -47.654 19.033 23.128 1 78.87 ? CG HSA 303 A 1 HETATM 3 C CD2 HSA . . . E 3 -48.229 18.742 21.914 1 70.46 ? CD2 HSA 303 A 1 HETATM 4 N ND1 HSA . . . E 3 -46.322 19.113 22.929 1 76.65 ? ND1 HSA 303 A 1 HETATM 5 C CE1 HSA . . . E 3 -46.086 18.879 21.624 1 76.55 ? CE1 HSA 303 A 1 HETATM 6 N NE2 HSA . . . E 3 -47.254 18.655 20.998 1 68.92 ? NE2 HSA 303 A 1 HETATM 7 C C HSA . . . E 3 -50.392 20.636 25.126 1 85.53 ? C HSA 303 A 1 HETATM 8 O OP4 HSA . . . E 3 -51.414 21.405 24.456 1 93.49 ? OP4 HSA 303 A 1 HETATM 9 P P HSA . . . E 3 -52.135 21.071 23.03 1 88 ? P HSA 303 A 1 HETATM 10 O OP1 HSA . . . E 3 -53.541 21.606 23.177 1 77.99 ? OP1 HSA 303 A 1 HETATM 11 O OP2 HSA . . . E 3 -51.222 21.857 22.112 1 101.56 -1 OP2 HSA 303 A 1 HETATM 12 O OP3 HSA . . . E 3 -52.128 19.585 22.782 1 70.78 ? OP3 HSA 303 A 1 HETATM 13 N N HSA . . . E 3 -48.114 21.596 24.797 1 78.35 ? N HSA 303 A 1 HETATM 14 C CA HSA . . . E 3 -49.072 20.594 24.344 1 81.4 ? CA HSA 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #