data_5YIA
#
_model_server_result.job_id            cHk5m7E_I7XqIFJdPgcvFg 
_model_server_result.datetime_utc      '2024-11-16 16:35:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yia 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5YIA 
#
_exptl.entry_id    5YIA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YIA 
_cell.length_a            106.08 
_cell.length_b            106.08 
_cell.length_c            70.88 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YIA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 46 A CYS 49 1_555 A SG CYS 51 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf2 A SG CYS 248 A CYS 251 1_555 A SG CYS 284 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 330 n n 
C1 C2 GOL sing 331 n n 
C1 H11 GOL sing 332 n n 
C1 H12 GOL sing 333 n n 
O1 HO1 GOL sing 334 n n 
C2 O2 GOL sing 335 n n 
C2 C3 GOL sing 336 n n 
C2 H2 GOL sing 337 n n 
O2 HO2 GOL sing 338 n n 
C3 O3 GOL sing 339 n n 
C3 H31 GOL sing 340 n n 
C3 H32 GOL sing 341 n n 
O3 HO3 GOL sing 342 n n 
#
_atom_sites.entry_id                     5YIA 
_atom_sites.fract_transf_matrix[1][1]    0.009427 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009427 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014108 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 8V9 A 1 401 1 8V9 343 . 
C 3 CPS A 1 402 1 CPS CPS . 
D 4 GOL A 1 403 1 GOL GOL . 
E 4 GOL A 1 404 2 GOL GOL . 
F 4 GOL A 1 405 4 GOL GOL . 
G 5 PO4 A 1 406 1 PO4 PO4 . 
H 6 HOH A 1 501 219 HOH HOH . 
H 6 HOH A 2 502 25 HOH HOH . 
H 6 HOH A 3 503 119 HOH HOH . 
H 6 HOH A 4 504 131 HOH HOH . 
H 6 HOH A 5 505 80 HOH HOH . 
H 6 HOH A 6 506 229 HOH HOH . 
H 6 HOH A 7 507 192 HOH HOH . 
H 6 HOH A 8 508 114 HOH HOH . 
H 6 HOH A 9 509 144 HOH HOH . 
H 6 HOH A 10 510 171 HOH HOH . 
H 6 HOH A 11 511 14 HOH HOH . 
H 6 HOH A 12 512 43 HOH HOH . 
H 6 HOH A 13 513 112 HOH HOH . 
H 6 HOH A 14 514 201 HOH HOH . 
H 6 HOH A 15 515 5 HOH HOH . 
H 6 HOH A 16 516 106 HOH HOH . 
H 6 HOH A 17 517 60 HOH HOH . 
H 6 HOH A 18 518 187 HOH HOH . 
H 6 HOH A 19 519 225 HOH HOH . 
H 6 HOH A 20 520 75 HOH HOH . 
H 6 HOH A 21 521 121 HOH HOH . 
H 6 HOH A 22 522 167 HOH HOH . 
H 6 HOH A 23 523 95 HOH HOH . 
H 6 HOH A 24 524 124 HOH HOH . 
H 6 HOH A 25 525 82 HOH HOH . 
H 6 HOH A 26 526 184 HOH HOH . 
H 6 HOH A 27 527 33 HOH HOH . 
H 6 HOH A 28 528 57 HOH HOH . 
H 6 HOH A 29 529 64 HOH HOH . 
H 6 HOH A 30 530 165 HOH HOH . 
H 6 HOH A 31 531 34 HOH HOH . 
H 6 HOH A 32 532 196 HOH HOH . 
H 6 HOH A 33 533 8 HOH HOH . 
H 6 HOH A 34 534 93 HOH HOH . 
H 6 HOH A 35 535 123 HOH HOH . 
H 6 HOH A 36 536 186 HOH HOH . 
H 6 HOH A 37 537 44 HOH HOH . 
H 6 HOH A 38 538 47 HOH HOH . 
H 6 HOH A 39 539 62 HOH HOH . 
H 6 HOH A 40 540 195 HOH HOH . 
H 6 HOH A 41 541 50 HOH HOH . 
H 6 HOH A 42 542 73 HOH HOH . 
H 6 HOH A 43 543 126 HOH HOH . 
H 6 HOH A 44 544 18 HOH HOH . 
H 6 HOH A 45 545 49 HOH HOH . 
H 6 HOH A 46 546 103 HOH HOH . 
H 6 HOH A 47 547 58 HOH HOH . 
H 6 HOH A 48 548 180 HOH HOH . 
H 6 HOH A 49 549 15 HOH HOH . 
H 6 HOH A 50 550 68 HOH HOH . 
H 6 HOH A 51 551 74 HOH HOH . 
H 6 HOH A 52 552 162 HOH HOH . 
H 6 HOH A 53 553 139 HOH HOH . 
H 6 HOH A 54 554 6 HOH HOH . 
H 6 HOH A 55 555 56 HOH HOH . 
H 6 HOH A 56 556 134 HOH HOH . 
H 6 HOH A 57 557 59 HOH HOH . 
H 6 HOH A 58 558 111 HOH HOH . 
H 6 HOH A 59 559 222 HOH HOH . 
H 6 HOH A 60 560 127 HOH HOH . 
H 6 HOH A 61 561 148 HOH HOH . 
H 6 HOH A 62 562 215 HOH HOH . 
H 6 HOH A 63 563 83 HOH HOH . 
H 6 HOH A 64 564 104 HOH HOH . 
H 6 HOH A 65 565 101 HOH HOH . 
H 6 HOH A 66 566 90 HOH HOH . 
H 6 HOH A 67 567 226 HOH HOH . 
H 6 HOH A 68 568 53 HOH HOH . 
H 6 HOH A 69 569 173 HOH HOH . 
H 6 HOH A 70 570 97 HOH HOH . 
H 6 HOH A 71 571 164 HOH HOH . 
H 6 HOH A 72 572 11 HOH HOH . 
H 6 HOH A 73 573 63 HOH HOH . 
H 6 HOH A 74 574 99 HOH HOH . 
H 6 HOH A 75 575 179 HOH HOH . 
H 6 HOH A 76 576 52 HOH HOH . 
H 6 HOH A 77 577 153 HOH HOH . 
H 6 HOH A 78 578 9 HOH HOH . 
H 6 HOH A 79 579 118 HOH HOH . 
H 6 HOH A 80 580 13 HOH HOH . 
H 6 HOH A 81 581 237 HOH HOH . 
H 6 HOH A 82 582 35 HOH HOH . 
H 6 HOH A 83 583 70 HOH HOH . 
H 6 HOH A 84 584 12 HOH HOH . 
H 6 HOH A 85 585 227 HOH HOH . 
H 6 HOH A 86 586 223 HOH HOH . 
H 6 HOH A 87 587 212 HOH HOH . 
H 6 HOH A 88 588 7 HOH HOH . 
H 6 HOH A 89 589 3 HOH HOH . 
H 6 HOH A 90 590 2 HOH HOH . 
H 6 HOH A 91 591 177 HOH HOH . 
H 6 HOH A 92 592 98 HOH HOH . 
H 6 HOH A 93 593 203 HOH HOH . 
H 6 HOH A 94 594 65 HOH HOH . 
H 6 HOH A 95 595 48 HOH HOH . 
H 6 HOH A 96 596 42 HOH HOH . 
H 6 HOH A 97 597 149 HOH HOH . 
H 6 HOH A 98 598 40 HOH HOH . 
H 6 HOH A 99 599 91 HOH HOH . 
H 6 HOH A 100 600 158 HOH HOH . 
H 6 HOH A 101 601 55 HOH HOH . 
H 6 HOH A 102 602 26 HOH HOH . 
H 6 HOH A 103 603 81 HOH HOH . 
H 6 HOH A 104 604 120 HOH HOH . 
H 6 HOH A 105 605 163 HOH HOH . 
H 6 HOH A 106 606 77 HOH HOH . 
H 6 HOH A 107 607 216 HOH HOH . 
H 6 HOH A 108 608 234 HOH HOH . 
H 6 HOH A 109 609 207 HOH HOH . 
H 6 HOH A 110 610 204 HOH HOH . 
H 6 HOH A 111 611 125 HOH HOH . 
H 6 HOH A 112 612 92 HOH HOH . 
H 6 HOH A 113 613 113 HOH HOH . 
H 6 HOH A 114 614 51 HOH HOH . 
H 6 HOH A 115 615 46 HOH HOH . 
H 6 HOH A 116 616 105 HOH HOH . 
H 6 HOH A 117 617 146 HOH HOH . 
H 6 HOH A 118 618 16 HOH HOH . 
H 6 HOH A 119 619 200 HOH HOH . 
H 6 HOH A 120 620 109 HOH HOH . 
H 6 HOH A 121 621 206 HOH HOH . 
H 6 HOH A 122 622 232 HOH HOH . 
H 6 HOH A 123 623 236 HOH HOH . 
H 6 HOH A 124 624 116 HOH HOH . 
H 6 HOH A 125 625 228 HOH HOH . 
H 6 HOH A 126 626 21 HOH HOH . 
H 6 HOH A 127 627 17 HOH HOH . 
H 6 HOH A 128 628 211 HOH HOH . 
H 6 HOH A 129 629 205 HOH HOH . 
H 6 HOH A 130 630 235 HOH HOH . 
H 6 HOH A 131 631 138 HOH HOH . 
H 6 HOH A 132 632 244 HOH HOH . 
H 6 HOH A 133 633 66 HOH HOH . 
H 6 HOH A 134 634 208 HOH HOH . 
H 6 HOH A 135 635 10 HOH HOH . 
H 6 HOH A 136 636 128 HOH HOH . 
H 6 HOH A 137 637 218 HOH HOH . 
H 6 HOH A 138 638 182 HOH HOH . 
H 6 HOH A 139 639 61 HOH HOH . 
H 6 HOH A 140 640 67 HOH HOH . 
H 6 HOH A 141 641 202 HOH HOH . 
H 6 HOH A 142 642 19 HOH HOH . 
H 6 HOH A 143 643 220 HOH HOH . 
H 6 HOH A 144 644 107 HOH HOH . 
H 6 HOH A 145 645 189 HOH HOH . 
H 6 HOH A 146 646 41 HOH HOH . 
H 6 HOH A 147 647 130 HOH HOH . 
H 6 HOH A 148 648 76 HOH HOH . 
H 6 HOH A 149 649 115 HOH HOH . 
H 6 HOH A 150 650 132 HOH HOH . 
H 6 HOH A 151 651 181 HOH HOH . 
H 6 HOH A 152 652 170 HOH HOH . 
H 6 HOH A 153 653 4 HOH HOH . 
H 6 HOH A 154 654 87 HOH HOH . 
H 6 HOH A 155 655 239 HOH HOH . 
H 6 HOH A 156 656 89 HOH HOH . 
H 6 HOH A 157 657 154 HOH HOH . 
H 6 HOH A 158 658 233 HOH HOH . 
H 6 HOH A 159 659 156 HOH HOH . 
H 6 HOH A 160 660 79 HOH HOH . 
H 6 HOH A 161 661 209 HOH HOH . 
H 6 HOH A 162 662 72 HOH HOH . 
H 6 HOH A 163 663 143 HOH HOH . 
H 6 HOH A 164 664 78 HOH HOH . 
H 6 HOH A 165 665 30 HOH HOH . 
H 6 HOH A 166 666 168 HOH HOH . 
H 6 HOH A 167 667 136 HOH HOH . 
H 6 HOH A 168 668 85 HOH HOH . 
H 6 HOH A 169 669 69 HOH HOH . 
H 6 HOH A 170 670 24 HOH HOH . 
H 6 HOH A 171 671 145 HOH HOH . 
H 6 HOH A 172 672 39 HOH HOH . 
H 6 HOH A 173 673 160 HOH HOH . 
H 6 HOH A 174 674 88 HOH HOH . 
H 6 HOH A 175 675 238 HOH HOH . 
H 6 HOH A 176 676 245 HOH HOH . 
H 6 HOH A 177 677 147 HOH HOH . 
H 6 HOH A 178 678 197 HOH HOH . 
H 6 HOH A 179 679 185 HOH HOH . 
H 6 HOH A 180 680 71 HOH HOH . 
H 6 HOH A 181 681 231 HOH HOH . 
H 6 HOH A 182 682 178 HOH HOH . 
H 6 HOH A 183 683 217 HOH HOH . 
H 6 HOH A 184 684 210 HOH HOH . 
H 6 HOH A 185 685 96 HOH HOH . 
H 6 HOH A 186 686 213 HOH HOH . 
H 6 HOH A 187 687 157 HOH HOH . 
H 6 HOH A 188 688 150 HOH HOH . 
H 6 HOH A 189 689 172 HOH HOH . 
H 6 HOH A 190 690 122 HOH HOH . 
H 6 HOH A 191 691 193 HOH HOH . 
H 6 HOH A 192 692 137 HOH HOH . 
H 6 HOH A 193 693 240 HOH HOH . 
H 6 HOH A 194 694 175 HOH HOH . 
H 6 HOH A 195 695 20 HOH HOH . 
H 6 HOH A 196 696 191 HOH HOH . 
H 6 HOH A 197 697 169 HOH HOH . 
H 6 HOH A 198 698 161 HOH HOH . 
H 6 HOH A 199 699 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 18.508 -26.333 -30.221 1 48.92 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 4 19.9 -26.038 -30.077 1 52.09 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 4 18.171 -27.574 -29.393 1 46.75 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 4 18.505 -27.388 -28.015 1 36.77 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 4 16.676 -27.885 -29.498 1 45.74 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 4 16.434 -28.991 -30.368 1 48.17 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#