data_5YIB
#
_model_server_result.job_id            9qBCO5y2xf3XowaYCnDupg 
_model_server_result.datetime_utc      '2024-11-24 15:37:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    5YIB 
#
_exptl.entry_id    5YIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              614.877 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YIB 
_cell.length_a            106.25 
_cell.length_b            106.25 
_cell.length_c            70.85 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 46 A CYS 49 1_555 A SG CYS 51 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 A SG CYS 248 A CYS 251 1_555 A SG CYS 284 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'C32 H58 N2 O7 S' 
_chem_comp.formula_weight    614.877 
_chem_comp.id                CPS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CHAPS 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CPS sing 179 n n 
C1 C12 CPS sing 180 n n 
C2 C11 CPS sing 181 n n 
C2 C15 CPS sing 182 n n 
C2 C19 CPS sing 183 n n 
C3 C4 CPS sing 184 n n 
C3 C19 CPS sing 185 n n 
C4 C5 CPS sing 186 n n 
C4 O4 CPS sing 187 n n 
C5 C6 CPS sing 188 n n 
C5 C9 CPS sing 189 n n 
C5 C10 CPS sing 190 n n 
C6 C7 CPS sing 191 n n 
C6 C18 CPS sing 192 n n 
C7 C8 CPS sing 193 n n 
C8 C9 CPS sing 194 n n 
C9 C20 CPS sing 195 n n 
C12 C13 CPS sing 196 n n 
C13 C14 CPS sing 197 n n 
C13 O2 CPS sing 198 n n 
C14 C15 CPS sing 199 n n 
C15 C16 CPS sing 200 n n 
C16 C17 CPS sing 201 n n 
C17 C18 CPS sing 202 n n 
C17 O3 CPS sing 203 n n 
C18 C19 CPS sing 204 n n 
C20 C21 CPS sing 205 n n 
C20 C22 CPS sing 206 n n 
C22 C23 CPS sing 207 n n 
C23 C24 CPS sing 208 n n 
C24 N1 CPS sing 209 n n 
C24 O1 CPS doub 210 n n 
C25 C26 CPS sing 211 n n 
C25 N1 CPS sing 212 n n 
C26 C27 CPS sing 213 n n 
C27 N2 CPS sing 214 n n 
C28 N2 CPS sing 215 n n 
C29 N2 CPS sing 216 n n 
C30 C31 CPS sing 217 n n 
C30 N2 CPS sing 218 n n 
C31 C32 CPS sing 219 n n 
C32 S CPS sing 220 n n 
O2S S CPS sing 221 n n 
O3S S CPS doub 222 n n 
O1S S CPS doub 223 n n 
C1 H1 CPS sing 224 n n 
C1 H1A CPS sing 225 n n 
C3 H3 CPS sing 226 n n 
C3 H3A CPS sing 227 n n 
C4 H4 CPS sing 228 n n 
C6 H6 CPS sing 229 n n 
C7 H7 CPS sing 230 n n 
C7 H7A CPS sing 231 n n 
C8 H8 CPS sing 232 n n 
C8 H8A CPS sing 233 n n 
C9 H9 CPS sing 234 n n 
C10 H10 CPS sing 235 n n 
C10 H10A CPS sing 236 n n 
C10 H10B CPS sing 237 n n 
C11 H11 CPS sing 238 n n 
C11 H11A CPS sing 239 n n 
C11 H11B CPS sing 240 n n 
C12 H12 CPS sing 241 n n 
C12 H12A CPS sing 242 n n 
C13 H13 CPS sing 243 n n 
C14 H14 CPS sing 244 n n 
C14 H14A CPS sing 245 n n 
C15 H15 CPS sing 246 n n 
C16 H16 CPS sing 247 n n 
C16 H16A CPS sing 248 n n 
C17 H17 CPS sing 249 n n 
C18 H18 CPS sing 250 n n 
C19 H19 CPS sing 251 n n 
C20 H20 CPS sing 252 n n 
C21 H21 CPS sing 253 n n 
C21 H21A CPS sing 254 n n 
C21 H21B CPS sing 255 n n 
C22 H22 CPS sing 256 n n 
C22 H22A CPS sing 257 n n 
C23 H23 CPS sing 258 n n 
C23 H23A CPS sing 259 n n 
C25 H25 CPS sing 260 n n 
C25 H25A CPS sing 261 n n 
C26 H261 CPS sing 262 n n 
C27 H271 CPS sing 263 n n 
C28 H28 CPS sing 264 n n 
C28 H28A CPS sing 265 n n 
C28 H28B CPS sing 266 n n 
C29 H29 CPS sing 267 n n 
C29 H29A CPS sing 268 n n 
C29 H29B CPS sing 269 n n 
C30 H30 CPS sing 270 n n 
C30 H30A CPS sing 271 n n 
C31 H31 CPS sing 272 n n 
C31 H31A CPS sing 273 n n 
C32 H32 CPS sing 274 n n 
C32 H32A CPS sing 275 n n 
N1 HN1 CPS sing 276 n n 
O2 HO2 CPS sing 277 n n 
O3 HO3 CPS sing 278 n n 
O4 HO4 CPS sing 279 n n 
C26 H262 CPS sing 280 n n 
C27 H272 CPS sing 281 n n 
#
_atom_sites.entry_id                     5YIB 
_atom_sites.fract_transf_matrix[1][1]    0.009412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009412 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014114 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 8VC A 1 401 2 8VC 743 . 
C 3 GOL A 1 402 1 GOL GOL . 
D 3 GOL A 1 403 3 GOL GOL . 
E 3 GOL A 1 404 4 GOL GOL . 
F 3 GOL A 1 405 6 GOL GOL . 
G 3 GOL A 1 406 7 GOL GOL . 
H 4 EDO A 1 407 1 EDO EDO . 
I 4 EDO A 1 408 2 EDO EDO . 
J 5 CPS A 1 409 1 CPS CPS . 
K 6 HOH A 1 501 101 HOH HOH . 
K 6 HOH A 2 502 31 HOH HOH . 
K 6 HOH A 3 503 45 HOH HOH . 
K 6 HOH A 4 504 55 HOH HOH . 
K 6 HOH A 5 505 100 HOH HOH . 
K 6 HOH A 6 506 98 HOH HOH . 
K 6 HOH A 7 507 120 HOH HOH . 
K 6 HOH A 8 508 103 HOH HOH . 
K 6 HOH A 9 509 8 HOH HOH . 
K 6 HOH A 10 510 20 HOH HOH . 
K 6 HOH A 11 511 67 HOH HOH . 
K 6 HOH A 12 512 51 HOH HOH . 
K 6 HOH A 13 513 113 HOH HOH . 
K 6 HOH A 14 514 35 HOH HOH . 
K 6 HOH A 15 515 48 HOH HOH . 
K 6 HOH A 16 516 6 HOH HOH . 
K 6 HOH A 17 517 34 HOH HOH . 
K 6 HOH A 18 518 66 HOH HOH . 
K 6 HOH A 19 519 96 HOH HOH . 
K 6 HOH A 20 520 26 HOH HOH . 
K 6 HOH A 21 521 30 HOH HOH . 
K 6 HOH A 22 522 15 HOH HOH . 
K 6 HOH A 23 523 33 HOH HOH . 
K 6 HOH A 24 524 52 HOH HOH . 
K 6 HOH A 25 525 11 HOH HOH . 
K 6 HOH A 26 526 105 HOH HOH . 
K 6 HOH A 27 527 12 HOH HOH . 
K 6 HOH A 28 528 54 HOH HOH . 
K 6 HOH A 29 529 97 HOH HOH . 
K 6 HOH A 30 530 102 HOH HOH . 
K 6 HOH A 31 531 64 HOH HOH . 
K 6 HOH A 32 532 17 HOH HOH . 
K 6 HOH A 33 533 43 HOH HOH . 
K 6 HOH A 34 534 42 HOH HOH . 
K 6 HOH A 35 535 108 HOH HOH . 
K 6 HOH A 36 536 19 HOH HOH . 
K 6 HOH A 37 537 7 HOH HOH . 
K 6 HOH A 38 538 111 HOH HOH . 
K 6 HOH A 39 539 13 HOH HOH . 
K 6 HOH A 40 540 122 HOH HOH . 
K 6 HOH A 41 541 53 HOH HOH . 
K 6 HOH A 42 542 121 HOH HOH . 
K 6 HOH A 43 543 41 HOH HOH . 
K 6 HOH A 44 544 4 HOH HOH . 
K 6 HOH A 45 545 65 HOH HOH . 
K 6 HOH A 46 546 78 HOH HOH . 
K 6 HOH A 47 547 5 HOH HOH . 
K 6 HOH A 48 548 24 HOH HOH . 
K 6 HOH A 49 549 18 HOH HOH . 
K 6 HOH A 50 550 29 HOH HOH . 
K 6 HOH A 51 551 73 HOH HOH . 
K 6 HOH A 52 552 124 HOH HOH . 
K 6 HOH A 53 553 36 HOH HOH . 
K 6 HOH A 54 554 10 HOH HOH . 
K 6 HOH A 55 555 2 HOH HOH . 
K 6 HOH A 56 556 14 HOH HOH . 
K 6 HOH A 57 557 123 HOH HOH . 
K 6 HOH A 58 558 115 HOH HOH . 
K 6 HOH A 59 559 86 HOH HOH . 
K 6 HOH A 60 560 38 HOH HOH . 
K 6 HOH A 61 561 25 HOH HOH . 
K 6 HOH A 62 562 79 HOH HOH . 
K 6 HOH A 63 563 77 HOH HOH . 
K 6 HOH A 64 564 47 HOH HOH . 
K 6 HOH A 65 565 40 HOH HOH . 
K 6 HOH A 66 566 21 HOH HOH . 
K 6 HOH A 67 567 99 HOH HOH . 
K 6 HOH A 68 568 9 HOH HOH . 
K 6 HOH A 69 569 137 HOH HOH . 
K 6 HOH A 70 570 60 HOH HOH . 
K 6 HOH A 71 571 95 HOH HOH . 
K 6 HOH A 72 572 39 HOH HOH . 
K 6 HOH A 73 573 82 HOH HOH . 
K 6 HOH A 74 574 76 HOH HOH . 
K 6 HOH A 75 575 118 HOH HOH . 
K 6 HOH A 76 576 125 HOH HOH . 
K 6 HOH A 77 577 112 HOH HOH . 
K 6 HOH A 78 578 16 HOH HOH . 
K 6 HOH A 79 579 50 HOH HOH . 
K 6 HOH A 80 580 136 HOH HOH . 
K 6 HOH A 81 581 68 HOH HOH . 
K 6 HOH A 82 582 28 HOH HOH . 
K 6 HOH A 83 583 27 HOH HOH . 
K 6 HOH A 84 584 72 HOH HOH . 
K 6 HOH A 85 585 22 HOH HOH . 
K 6 HOH A 86 586 32 HOH HOH . 
K 6 HOH A 87 587 109 HOH HOH . 
K 6 HOH A 88 588 135 HOH HOH . 
K 6 HOH A 89 589 114 HOH HOH . 
K 6 HOH A 90 590 37 HOH HOH . 
K 6 HOH A 91 591 107 HOH HOH . 
K 6 HOH A 92 592 88 HOH HOH . 
K 6 HOH A 93 593 69 HOH HOH . 
K 6 HOH A 94 594 44 HOH HOH . 
K 6 HOH A 95 595 133 HOH HOH . 
K 6 HOH A 96 596 58 HOH HOH . 
K 6 HOH A 97 597 62 HOH HOH . 
K 6 HOH A 98 598 74 HOH HOH . 
K 6 HOH A 99 599 23 HOH HOH . 
K 6 HOH A 100 600 132 HOH HOH . 
K 6 HOH A 101 601 1 HOH HOH . 
K 6 HOH A 102 602 93 HOH HOH . 
K 6 HOH A 103 603 89 HOH HOH . 
K 6 HOH A 104 604 3 HOH HOH . 
K 6 HOH A 105 605 110 HOH HOH . 
K 6 HOH A 106 606 63 HOH HOH . 
K 6 HOH A 107 607 57 HOH HOH . 
K 6 HOH A 108 608 134 HOH HOH . 
K 6 HOH A 109 609 116 HOH HOH . 
K 6 HOH A 110 610 71 HOH HOH . 
K 6 HOH A 111 611 131 HOH HOH . 
K 6 HOH A 112 612 119 HOH HOH . 
K 6 HOH A 113 613 80 HOH HOH . 
K 6 HOH A 114 614 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CPS . . . J 5 14.618 -20.029 -16.349 1 58.39 ? C1 CPS 409 A 1 
HETATM 2 C C2 CPS . . . J 5 13.751 -18.917 -16.963 1 55.52 ? C2 CPS 409 A 1 
HETATM 3 C C3 CPS . . . J 5 14.903 -19.422 -19.245 1 51.67 ? C3 CPS 409 A 1 
HETATM 4 C C4 CPS . . . J 5 15.434 -18.918 -20.589 1 53.28 ? C4 CPS 409 A 1 
HETATM 5 C C5 CPS . . . J 5 14.638 -17.728 -21.134 1 54.93 ? C5 CPS 409 A 1 
HETATM 6 C C6 CPS . . . J 5 14.541 -16.674 -20.03 1 52.96 ? C6 CPS 409 A 1 
HETATM 7 C C7 CPS . . . J 5 14.021 -15.424 -20.722 1 54.6 ? C7 CPS 409 A 1 
HETATM 8 C C8 CPS . . . J 5 14.616 -15.51 -22.122 1 55.35 ? C8 CPS 409 A 1 
HETATM 9 C C9 CPS . . . J 5 15.293 -16.878 -22.24 1 55.94 ? C9 CPS 409 A 1 
HETATM 10 C C10 CPS . . . J 5 13.267 -18.261 -21.592 1 54.07 ? C10 CPS 409 A 1 
HETATM 11 C C11 CPS . . . J 5 12.385 -19.484 -17.357 1 55.87 ? C11 CPS 409 A 1 
HETATM 12 C C12 CPS . . . J 5 14.574 -20.088 -14.823 1 59.88 ? C12 CPS 409 A 1 
HETATM 13 C C13 CPS . . . J 5 15.101 -18.794 -14.203 1 60.21 ? C13 CPS 409 A 1 
HETATM 14 C C14 CPS . . . J 5 14.714 -17.564 -15.029 1 58.9 ? C14 CPS 409 A 1 
HETATM 15 C C15 CPS . . . J 5 13.488 -17.815 -15.915 1 56.35 ? C15 CPS 409 A 1 
HETATM 16 C C16 CPS . . . J 5 12.951 -16.496 -16.494 1 54.39 ? C16 CPS 409 A 1 
HETATM 17 C C17 CPS . . . J 5 13.647 -16.009 -17.76 1 50.68 ? C17 CPS 409 A 1 
HETATM 18 C C18 CPS . . . J 5 13.788 -17.125 -18.788 1 52.48 ? C18 CPS 409 A 1 
HETATM 19 C C19 CPS . . . J 5 14.512 -18.35 -18.193 1 53.82 ? C19 CPS 409 A 1 
HETATM 20 C C20 CPS . . . J 5 15.272 -17.359 -23.7 1 59.3 ? C20 CPS 409 A 1 
HETATM 21 C C21 CPS . . . J 5 15.967 -18.703 -23.879 1 60.94 ? C21 CPS 409 A 1 
HETATM 22 C C22 CPS . . . J 5 15.892 -16.352 -24.685 1 60.46 ? C22 CPS 409 A 1 
HETATM 23 C C23 CPS . . . J 5 17.274 -15.823 -24.286 1 61.7 ? C23 CPS 409 A 1 
HETATM 24 C C24 CPS . . . J 5 17.95 -15.177 -25.485 1 60.01 ? C24 CPS 409 A 1 
HETATM 25 C C25 CPS . . . J 5 20.088 -16.491 -25.272 1 63.74 ? C25 CPS 409 A 1 
HETATM 26 C C26 CPS . . . J 5 21.494 -15.917 -25.183 1 70.73 ? C26 CPS 409 A 1 
HETATM 27 N N1 CPS . . . J 5 19.177 -15.54 -25.901 1 62.12 ? N1 CPS 409 A 1 
HETATM 28 O O1 CPS . . . J 5 17.348 -14.285 -26.068 1 66.83 ? O1 CPS 409 A 1 
HETATM 29 O O2 CPS . . . J 5 16.529 -18.872 -14.116 1 61.98 ? O2 CPS 409 A 1 
HETATM 30 O O3 CPS . . . J 5 14.92 -15.49 -17.398 1 48.29 ? O3 CPS 409 A 1 
HETATM 31 O O4 CPS . . . J 5 16.835 -18.654 -20.463 1 54.35 ? O4 CPS 409 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#